Wall clock time and date at job start Sat Apr 11 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36535 * 120.09163 * 2 1 4 4 C 1.40713 * 118.24351 * 179.97438 * 3 2 1 5 5 C 1.40432 * 121.28058 * 180.02562 * 4 3 2 6 6 C 1.36131 * 119.64417 * 180.02562 * 5 4 3 7 7 C 1.39431 * 120.92251 * 359.86144 * 6 5 4 8 8 C 1.35990 * 121.09079 * 0.09290 * 7 6 5 9 9 C 1.40832 * 119.73406 * 359.97438 * 8 7 6 10 10 N 1.33247 * 120.99105 * 180.02562 * 9 8 7 11 11 C 1.31905 * 121.29930 * 179.72295 * 10 9 8 12 12 C 1.48270 * 119.24040 * 180.25928 * 11 10 9 13 13 O 1.21502 * 119.99916 * 255.65798 * 12 11 10 14 14 N 1.34773 * 120.00153 * 75.65916 * 12 11 10 15 15 C 1.48214 * 119.97284 * 184.56502 * 14 12 11 16 16 C 1.47140 * 110.34527 * 102.46289 * 15 14 12 17 17 C 1.53804 * 111.83494 * 58.29605 * 16 15 14 18 18 N 1.43461 * 107.96537 * 281.66730 * 17 16 15 19 19 C 1.36931 * 118.94431 * 273.63439 * 18 17 16 20 20 H 1.08003 * 120.00186 * 28.54590 * 19 18 17 21 21 C 1.38813 * 120.00132 * 208.54117 * 19 18 17 22 22 N 1.31622 * 119.99787 * 9.74791 * 21 19 18 23 23 Si 1.86800 * 120.00083 * 189.74094 * 21 19 18 24 24 H 1.48500 * 109.47009 * 60.00577 * 23 21 19 25 25 H 1.48506 * 109.47021 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47114 * 300.00081 * 23 21 19 27 27 C 1.48863 * 122.11672 * 93.65329 * 18 17 16 28 28 C 1.43619 * 119.97095 * 4.28949 * 14 12 11 29 29 H 1.09006 * 109.47221 * 85.57589 * 1 2 3 30 30 H 1.09001 * 109.47367 * 205.57531 * 1 2 3 31 31 H 1.09000 * 109.47433 * 325.57655 * 1 2 3 32 32 H 1.07997 * 120.87609 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.17578 * 359.92768 * 5 4 3 34 34 H 1.08007 * 119.53520 * 179.97438 * 6 5 4 35 35 H 1.08007 * 119.45525 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.13451 * 179.97438 * 8 7 6 37 37 H 1.09010 * 109.32274 * 222.73163 * 15 14 12 38 38 H 1.09001 * 109.32672 * 342.37216 * 15 14 12 39 39 H 1.09003 * 109.00482 * 178.90064 * 16 15 14 40 40 H 1.08991 * 109.00846 * 297.76895 * 16 15 14 41 41 H 1.08994 * 109.76322 * 41.29277 * 17 16 15 42 42 H 1.09000 * 109.75735 * 162.00504 * 17 16 15 43 43 H 0.96997 * 119.99870 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.47820 * 80.58138 * 27 18 17 45 45 H 1.08999 * 109.48261 * 200.61578 * 27 18 17 46 46 H 1.09004 * 108.87688 * 31.46648 * 28 14 12 47 47 H 1.08999 * 108.87741 * 149.90834 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1813 0.0000 4 6 3.5980 1.1360 0.0006 5 6 4.3655 2.3120 0.0011 6 6 5.7243 2.2293 0.0011 7 6 6.3668 0.9918 0.0035 8 6 5.6568 -0.1681 0.0039 9 6 4.2491 -0.1254 0.0025 10 7 3.5287 -1.2463 0.0035 11 6 2.2101 -1.2134 0.0077 12 6 1.4538 -2.4887 0.0144 13 8 0.9164 -2.8817 -1.0021 14 7 1.3624 -3.2121 1.1478 15 6 0.6936 -4.5346 1.1304 16 6 1.6938 -5.6138 1.1329 17 6 2.6197 -5.5327 2.3583 18 7 3.5920 -4.5072 2.1112 19 6 4.7372 -4.8294 1.4331 20 1 4.7310 -5.6366 0.7156 21 6 5.9061 -4.1184 1.6678 22 7 5.9692 -3.2683 2.6707 23 14 7.3895 -4.3681 0.5603 24 1 7.0294 -4.0153 -0.8365 25 1 8.5023 -3.4986 1.0198 26 1 7.8164 -5.7893 0.6177 27 6 3.3962 -3.1042 2.5686 28 6 1.9184 -2.7033 2.3704 29 1 -0.3634 0.0793 -1.0246 30 1 -0.3634 -0.9270 0.4436 31 1 -0.3634 0.8477 0.5809 32 1 1.6675 2.1256 -0.0004 33 1 3.8803 3.2769 0.0000 34 1 6.3128 3.1349 0.0011 35 1 7.4462 0.9538 0.0038 36 1 6.1704 -1.1181 0.0053 37 1 0.0585 -4.6293 2.0113 38 1 0.0803 -4.6168 0.2330 39 1 1.1792 -6.5746 1.1396 40 1 2.2971 -5.5407 0.2281 41 1 2.0369 -5.2823 3.2447 42 1 3.1211 -6.4893 2.5052 43 1 6.7861 -2.7718 2.8349 44 1 3.6572 -3.0263 3.6241 45 1 4.0343 -2.4396 1.9862 46 1 1.8511 -1.6154 2.3626 47 1 1.3353 -3.0847 3.2086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981638793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:53 Heat of formation + Delta-G solvation = 39.751023 kcal Electronic energy + Delta-G solvation = -31269.046933 eV Core-core repulsion = 27417.002895 eV Total energy + Delta-G solvation = -3852.044038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21930 -40.89246 -38.76331 -37.93406 -35.95159 -35.13288 -34.31579 -32.80036 -32.60398 -31.23376 -29.31284 -28.06234 -27.42562 -26.04426 -25.45191 -23.72740 -23.32835 -22.99808 -21.49257 -20.60805 -19.18714 -18.81786 -18.16720 -17.83887 -17.62987 -16.94845 -16.50933 -16.06613 -15.64986 -15.60963 -15.50496 -15.29276 -15.03577 -14.76271 -14.57604 -14.23437 -14.03763 -13.97909 -13.91856 -13.88884 -13.44988 -13.20270 -13.13974 -12.87794 -12.59881 -12.56525 -12.50736 -12.39858 -12.38699 -12.08208 -11.72131 -11.69514 -11.44142 -11.32922 -11.24140 -10.45584 -10.31815 -9.64984 -9.64211 -9.18788 -8.54189 -7.79177 -5.24868 -0.61899 -0.28142 1.02816 1.30053 1.35667 1.38078 1.44687 1.86664 2.07152 2.50844 3.06377 3.15692 3.36702 3.50589 3.66043 3.73176 3.77295 3.88330 4.02317 4.09176 4.17081 4.22370 4.30074 4.35949 4.42317 4.47687 4.53569 4.56857 4.66096 4.73065 4.79599 4.82334 4.89494 4.93982 5.01259 5.06440 5.09088 5.17464 5.23396 5.33339 5.39940 5.46020 5.47478 5.57419 5.64117 5.74494 5.89172 5.91721 6.35477 6.48538 6.86424 7.02334 7.25244 8.01564 8.40705 9.24700 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008990 B = 0.006982 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.910202 B = 4009.628503 C = 6369.739867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.125 4.125 3 C -0.048 4.048 4 C -0.103 4.103 5 C -0.091 4.091 6 C -0.106 4.106 7 C -0.100 4.100 8 C -0.114 4.114 9 C 0.098 3.902 10 N -0.459 5.459 11 C 0.107 3.893 12 C 0.579 3.421 13 O -0.575 6.575 14 N -0.569 5.569 15 C 0.125 3.875 16 C -0.157 4.157 17 C 0.158 3.842 18 N -0.599 5.599 19 C -0.254 4.254 20 H 0.041 0.959 21 C -0.022 4.022 22 N -0.919 5.919 23 Si 0.936 3.064 24 H -0.296 1.296 25 H -0.284 1.284 26 H -0.279 1.279 27 C 0.166 3.834 28 C 0.095 3.905 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.194 0.806 33 H 0.177 0.823 34 H 0.170 0.830 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.245 0.755 44 H 0.010 0.990 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 14.619 -0.703 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.128 4.128 3 C -0.073 4.073 4 C -0.105 4.105 5 C -0.109 4.109 6 C -0.123 4.123 7 C -0.120 4.120 8 C -0.133 4.133 9 C -0.024 4.024 10 N -0.169 5.169 11 C -0.048 4.048 12 C 0.366 3.634 13 O -0.455 6.455 14 N -0.298 5.298 15 C 0.005 3.995 16 C -0.198 4.198 17 C 0.030 3.970 18 N -0.322 5.322 19 C -0.385 4.385 20 H 0.059 0.941 21 C -0.219 4.219 22 N -0.565 5.565 23 Si 0.766 3.234 24 H -0.223 1.223 25 H -0.209 1.209 26 H -0.206 1.206 27 C 0.040 3.960 28 C -0.030 4.030 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.211 0.789 33 H 0.194 0.806 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.028 0.972 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.758 13.688 -1.115 16.847 hybrid contribution 1.339 -0.378 -0.718 1.565 sum -8.419 13.310 -1.833 15.856 Atomic orbital electron populations 1.20797 0.87584 1.03801 1.03805 1.20746 0.99149 0.91855 1.01012 1.21696 0.91607 0.99195 0.94814 1.19276 0.95469 0.94138 1.01618 1.21427 0.94029 0.97381 0.98103 1.21376 0.95204 0.97921 0.97817 1.21202 1.01304 0.91884 0.97569 1.20864 0.92020 0.99369 1.01059 1.19175 0.94370 0.88698 1.00205 1.67968 1.06810 1.32018 1.10069 1.21197 0.90178 0.94142 0.99302 1.18226 0.78591 0.83348 0.83228 1.90676 1.49477 1.71938 1.33430 1.47420 1.54704 1.19103 1.08555 1.20829 0.94533 0.80212 1.03964 1.21721 0.98500 0.99134 1.00406 1.20460 0.90357 0.91511 0.94639 1.43726 1.18730 1.04375 1.65320 1.19075 0.88041 1.15993 1.15351 0.94091 1.25369 0.98712 0.99994 0.97799 1.70072 1.26720 1.29938 1.29746 0.85837 0.80964 0.77600 0.78972 1.22336 1.20920 1.20563 1.21750 0.91865 0.85890 0.96492 1.21871 0.96722 0.98209 0.86221 0.89969 0.93017 0.87152 0.78905 0.80567 0.81267 0.83749 0.88915 0.87573 0.90270 0.88920 0.95974 0.92392 0.94509 0.94506 0.97189 0.91150 0.91645 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 9.67 71.24 0.69 -1.57 16 2 C -0.12 -3.67 5.89 -19.77 -0.12 -3.79 16 3 C -0.05 -1.13 9.54 22.48 0.21 -0.91 16 4 C -0.10 -2.96 5.75 -21.22 -0.12 -3.08 16 5 C -0.09 -1.82 9.77 22.31 0.22 -1.61 16 6 C -0.11 -2.14 9.95 22.07 0.22 -1.92 16 7 C -0.10 -2.81 9.94 22.03 0.22 -2.59 16 8 C -0.11 -4.48 9.99 22.38 0.22 -4.25 16 9 C 0.10 3.89 6.61 40.48 0.27 4.16 16 10 N -0.46 -21.00 8.64 -177.78 -1.54 -22.53 16 11 C 0.11 4.28 4.63 42.29 0.20 4.48 16 12 C 0.58 24.51 5.60 86.91 0.49 25.00 16 13 O -0.58 -26.84 16.53 -3.72 -0.06 -26.90 16 14 N -0.57 -21.77 2.47 -835.10 -2.06 -23.83 16 15 C 0.12 4.11 5.72 84.23 0.48 4.60 16 16 C -0.16 -5.77 5.64 29.04 0.16 -5.61 16 17 C 0.16 6.52 5.63 87.21 0.49 7.01 16 18 N -0.60 -30.58 2.53 -699.00 -1.77 -32.35 16 19 C -0.25 -14.76 9.25 84.03 0.78 -13.98 16 20 H 0.04 2.47 7.85 -2.91 -0.02 2.44 16 21 C -0.02 -1.30 5.04 84.86 0.43 -0.88 16 22 N -0.92 -54.35 10.85 21.65 0.23 -54.11 16 23 Si 0.94 48.11 29.56 68.60 2.03 50.14 16 24 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 25 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 27 C 0.17 8.06 5.11 86.40 0.44 8.50 16 28 C 0.10 3.58 4.98 87.39 0.43 4.01 16 29 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.05 1.30 6.87 -2.39 -0.02 1.28 16 31 H 0.11 1.52 8.11 -2.39 -0.02 1.50 16 32 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.11 2.64 8.06 -2.38 -0.02 2.62 16 38 H 0.08 2.65 7.08 -2.39 -0.02 2.63 16 39 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.02 1.00 7.90 -2.39 -0.02 0.99 16 41 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 42 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 43 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 44 H 0.01 0.53 7.96 -2.39 -0.02 0.51 16 45 H 0.07 3.86 4.99 -2.39 -0.01 3.85 16 46 H 0.07 2.35 6.93 -2.38 -0.02 2.33 16 47 H 0.09 2.90 7.73 -2.39 -0.02 2.88 16 Total: -1.00 -80.85 374.60 3.53 -77.33 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.98 Total: 14.68 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.71 Total: 17.58 kcal Atomic # 7 Polarization: -127.69 SS G_CDS: -5.13 Total: -132.82 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.06 Total: -26.90 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -80.85 3.53 -77.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981638793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.076 kcal (2) G-P(sol) polarization free energy of solvation -80.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds