Wall clock time and date at job start Sat Apr 11 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39042 * 121.02285 * 2 1 4 4 C 1.47762 * 120.26328 * 359.97438 * 3 2 1 5 5 O 1.21557 * 120.00296 * 306.24164 * 4 3 2 6 6 N 1.34783 * 119.99621 * 126.24110 * 4 3 2 7 7 C 1.46922 * 120.63313 * 354.25059 * 6 4 3 8 8 C 1.53193 * 108.77525 * 233.62946 * 7 6 4 9 9 C 1.53044 * 109.31042 * 305.36456 * 8 7 6 10 10 C 1.53035 * 109.53859 * 61.36632 * 9 8 7 11 11 H 1.08994 * 109.50307 * 58.58390 * 10 9 8 12 12 N 1.46502 * 109.52580 * 178.66804 * 10 9 8 13 13 C 1.36934 * 120.00484 * 204.91822 * 12 10 9 14 14 H 1.07999 * 119.99374 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00142 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00130 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99942 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46987 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47025 * 119.99799 * 17 15 13 20 20 H 1.48501 * 109.46901 * 239.99814 * 17 15 13 21 21 C 1.46924 * 120.62709 * 174.27054 * 6 4 3 22 22 C 1.40561 * 119.46949 * 180.25160 * 3 2 1 23 23 N 1.30818 * 121.53362 * 359.44060 * 22 3 2 24 24 C 1.33795 * 121.72118 * 0.54990 * 23 22 3 25 25 C 1.40530 * 120.81497 * 179.69911 * 24 23 22 26 26 C 1.36133 * 119.81222 * 180.02562 * 25 24 23 27 27 C 1.39342 * 121.08986 * 359.95715 * 26 25 24 28 28 C 1.36137 * 120.84481 * 0.04409 * 27 26 25 29 29 C 1.40498 * 121.01358 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47219 * 94.99562 * 1 2 3 31 31 H 1.09006 * 109.47309 * 214.99931 * 1 2 3 32 32 H 1.09003 * 109.46831 * 335.00213 * 1 2 3 33 33 H 1.08996 * 109.58749 * 353.41247 * 7 6 4 34 34 H 1.08998 * 109.58819 * 113.84114 * 7 6 4 35 35 H 1.08999 * 109.49982 * 65.31395 * 8 7 6 36 36 H 1.09001 * 109.50200 * 185.37970 * 8 7 6 37 37 H 1.08995 * 109.45586 * 301.34048 * 9 8 7 38 38 H 1.09000 * 109.45602 * 181.38778 * 9 8 7 39 39 H 0.97001 * 119.99513 * 24.91779 * 12 10 9 40 40 H 0.97005 * 119.99667 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.58859 * 6.58245 * 21 6 4 42 42 H 1.09000 * 109.70212 * 246.22820 * 21 6 4 43 43 H 1.07996 * 119.22626 * 179.70411 * 22 3 2 44 44 H 1.07998 * 120.09333 * 0.02562 * 25 24 23 45 45 H 1.08002 * 119.45153 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.57709 * 180.02562 * 27 26 25 47 47 H 1.07996 * 120.19124 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1915 0.0000 4 6 1.5137 2.4875 -0.0006 5 8 0.6762 2.7214 -0.8500 6 7 1.7948 3.4102 0.9408 7 6 2.7106 3.0970 2.0462 8 6 2.0077 3.4069 3.3716 9 6 1.5137 4.8553 3.3559 10 6 0.5051 5.0398 2.2197 11 1 -0.3290 4.3520 2.3584 12 7 0.0085 6.4180 2.2247 13 6 -1.2167 6.7064 1.6856 14 1 -1.8168 5.9177 1.2563 15 6 -1.6870 8.0123 1.6899 16 7 -0.9554 8.9735 2.2126 17 14 -3.3582 8.4057 0.9538 18 1 -3.9762 7.1592 0.4347 19 1 -4.2333 8.9945 1.9991 20 1 -3.1933 9.3762 -0.1581 21 6 1.1909 4.7483 0.8812 22 6 3.6287 1.1534 -0.0054 23 7 4.2824 0.0203 0.0005 24 6 3.6482 -1.1577 0.0010 25 6 4.3696 -2.3637 0.0010 26 6 3.7034 -3.5509 0.0009 27 6 2.3107 -3.5945 0.0017 28 6 1.5765 -2.4480 0.0017 29 6 2.2309 -1.2041 0.0005 30 1 -0.3633 -0.0895 -1.0237 31 1 -0.3634 -0.8419 0.5895 32 1 -0.3633 0.9314 0.4343 33 1 2.9767 2.0405 2.0121 34 1 3.6106 3.7056 1.9588 35 1 1.1594 2.7346 3.4995 36 1 2.7080 3.2698 4.1956 37 1 2.3594 5.5258 3.2032 38 1 1.0348 5.0860 4.3075 39 1 0.5478 7.1264 2.6100 40 1 -1.2842 9.8861 2.2159 41 1 0.4544 4.7814 0.0784 42 1 1.9653 5.4931 0.6976 43 1 4.1813 2.0813 -0.0102 44 1 5.4495 -2.3487 0.0010 45 1 4.2637 -4.4742 0.0005 46 1 1.8072 -4.5500 0.0021 47 1 0.4975 -2.4941 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999726213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:02 Heat of formation + Delta-G solvation = 10.224548 kcal Electronic energy + Delta-G solvation = -29182.904902 eV Core-core repulsion = 25329.580501 eV Total energy + Delta-G solvation = -3853.324402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.28385 -40.95101 -38.82358 -37.91017 -36.24486 -35.64992 -34.00312 -32.78932 -31.92331 -31.34989 -29.99492 -29.02189 -26.80779 -25.91932 -24.91953 -24.79762 -23.30486 -22.08230 -21.99259 -20.58817 -19.20665 -19.06641 -18.84943 -17.85698 -17.35437 -16.83262 -16.58665 -16.15231 -15.75725 -15.56315 -15.44710 -15.39073 -15.21020 -15.09472 -14.92084 -14.55228 -14.18267 -14.06741 -13.99454 -13.79031 -13.72250 -13.15286 -13.11679 -12.93483 -12.77438 -12.68394 -12.53604 -12.39362 -12.18210 -12.04161 -11.92618 -11.71475 -11.37655 -11.33549 -11.16188 -11.09093 -10.51489 -9.86987 -9.75965 -9.23511 -9.03215 -7.99372 -5.28502 -0.77428 -0.39076 0.84898 1.42653 1.44539 1.45115 1.54750 1.77971 2.02400 2.52636 3.00571 3.14654 3.33478 3.36330 3.42622 3.53998 3.70884 3.83189 3.84928 3.98685 4.02368 4.16783 4.20071 4.27110 4.31705 4.36279 4.38788 4.44789 4.52064 4.55344 4.56687 4.68967 4.84266 4.86534 4.91975 4.93836 4.99261 5.02740 5.08733 5.10145 5.35442 5.37496 5.42062 5.42297 5.43600 5.48581 5.54076 5.86218 6.23384 6.32087 6.74814 7.00250 7.30299 8.02026 8.27544 9.23390 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.002605 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.828540 B =10745.116357 C =11420.703850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 C -0.203 4.203 4 C 0.563 3.437 5 O -0.576 6.576 6 N -0.594 5.594 7 C 0.103 3.897 8 C -0.120 4.120 9 C -0.117 4.117 10 C 0.169 3.831 11 H 0.031 0.969 12 N -0.729 5.729 13 C -0.242 4.242 14 H 0.065 0.935 15 C -0.068 4.068 16 N -0.963 5.963 17 Si 0.967 3.033 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.292 1.292 21 C 0.107 3.893 22 C 0.164 3.836 23 N -0.490 5.490 24 C 0.118 3.882 25 C -0.115 4.115 26 C -0.081 4.081 27 C -0.112 4.112 28 C -0.098 4.098 29 C -0.120 4.120 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.378 0.622 40 H 0.253 0.747 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.176 0.824 44 H 0.146 0.854 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.458 -28.950 -0.097 31.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.018 3.982 3 C -0.208 4.208 4 C 0.351 3.649 5 O -0.456 6.456 6 N -0.326 5.326 7 C -0.019 4.019 8 C -0.158 4.158 9 C -0.155 4.155 10 C 0.059 3.941 11 H 0.049 0.951 12 N -0.369 5.369 13 C -0.374 4.374 14 H 0.083 0.917 15 C -0.261 4.261 16 N -0.613 5.613 17 Si 0.796 3.204 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.219 1.219 21 C -0.018 4.018 22 C -0.009 4.009 23 N -0.198 5.198 24 C -0.003 4.003 25 C -0.133 4.133 26 C -0.100 4.100 27 C -0.130 4.130 28 C -0.117 4.117 29 C -0.122 4.122 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.211 0.789 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.193 0.807 44 H 0.164 0.836 45 H 0.182 0.818 46 H 0.180 0.820 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.774 -28.947 -0.590 31.646 hybrid contribution -1.800 1.547 -0.503 2.426 sum 10.974 -27.400 -1.093 29.537 Atomic orbital electron populations 1.20944 0.88758 1.03771 1.04126 1.20723 0.97305 0.90883 0.89250 1.20650 0.96037 0.93054 1.11057 1.18451 0.81592 0.83866 0.81016 1.90778 1.35032 1.79941 1.39848 1.48215 1.46036 1.12639 1.25725 1.22112 0.92376 1.02421 0.84971 1.21850 1.01142 0.95239 0.97573 1.21729 0.98381 0.97698 0.97734 1.20622 0.94527 0.85902 0.93063 0.95097 1.42509 1.18963 1.04444 1.70950 1.19530 0.94902 0.92823 1.30139 0.91663 1.25474 1.02126 0.95812 1.02687 1.69796 1.39206 1.00233 1.52106 0.85174 0.80023 0.77705 0.77490 1.19748 1.21502 1.21899 1.22298 0.97139 0.81777 1.00572 1.23125 0.89218 0.97245 0.91325 1.68001 1.39570 0.97809 1.14469 1.19412 0.90200 0.93174 0.97470 1.21056 1.01186 0.89941 1.01143 1.21429 0.94884 0.98564 0.95120 1.21397 0.94228 0.99418 0.97949 1.21371 1.01500 0.90466 0.98319 1.18833 0.93978 0.94435 1.04987 0.89253 0.87594 0.92766 0.88757 0.88795 0.92190 0.87226 0.91085 0.91883 0.78930 0.93844 0.92896 0.91605 0.80688 0.83609 0.81757 0.81966 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 8.74 71.24 0.62 -2.00 16 2 C 0.03 0.64 5.98 -19.12 -0.11 0.53 16 3 C -0.20 -5.40 4.60 -20.00 -0.09 -5.49 16 4 C 0.56 18.58 6.15 86.76 0.53 19.12 16 5 O -0.58 -24.02 15.42 -3.90 -0.06 -24.08 16 6 N -0.59 -18.19 2.97 -822.43 -2.44 -20.64 16 7 C 0.10 2.23 5.57 86.36 0.48 2.71 16 8 C -0.12 -2.62 6.08 30.67 0.19 -2.43 16 9 C -0.12 -3.51 5.36 30.62 0.16 -3.35 16 10 C 0.17 6.75 2.92 45.07 0.13 6.88 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 12 N -0.73 -36.88 5.12 -322.59 -1.65 -38.53 16 13 C -0.24 -13.80 9.93 84.03 0.83 -12.96 16 14 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 15 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 16 N -0.96 -58.87 13.06 21.65 0.28 -58.59 16 17 Si 0.97 47.40 29.55 68.60 2.03 49.42 16 18 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 21 C 0.11 4.12 6.02 86.36 0.52 4.65 16 22 C 0.16 3.84 8.93 85.41 0.76 4.60 16 23 N -0.49 -11.58 10.30 -187.69 -1.93 -13.52 16 24 C 0.12 2.53 6.61 40.29 0.27 2.80 16 25 C -0.11 -1.76 9.97 22.34 0.22 -1.53 16 26 C -0.08 -0.78 9.94 22.05 0.22 -0.56 16 27 C -0.11 -1.06 9.96 22.05 0.22 -0.84 16 28 C -0.10 -1.36 9.31 22.35 0.21 -1.15 16 29 C -0.12 -2.48 5.74 -21.28 -0.12 -2.60 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.11 1.58 6.78 -2.38 -0.02 1.56 16 32 H 0.05 1.49 6.67 -2.39 -0.02 1.47 16 33 H 0.09 1.81 5.39 -2.39 -0.01 1.80 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.38 20.07 7.80 -92.71 -0.72 19.35 16 40 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 41 H 0.05 2.44 7.00 -2.39 -0.02 2.43 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.18 3.41 7.75 -2.91 -0.02 3.39 16 44 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 46 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 47 H 0.15 1.47 6.55 -2.91 -0.02 1.45 16 Total: -1.00 -75.57 378.40 2.00 -73.57 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.28 Total: 27.51 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.51 Total: 4.84 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -5.75 Total: -131.27 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.08 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.57 2.00 -73.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999726213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.794 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds