Wall clock time and date at job start Sat Apr 11 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86793 * 119.99906 * 2 1 4 4 H 1.48507 * 109.47084 * 240.27596 * 3 2 1 5 5 H 1.48495 * 109.47558 * 0.27481 * 3 2 1 6 6 H 1.48503 * 109.47347 * 120.27644 * 3 2 1 7 7 C 1.38812 * 119.99595 * 180.27289 * 2 1 3 8 8 H 1.07997 * 119.99662 * 179.72406 * 7 2 1 9 9 N 1.36934 * 120.00049 * 359.73024 * 7 2 1 10 10 C 1.46505 * 119.99894 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.49743 * 34.92532 * 10 9 7 12 12 C 1.53039 * 109.49813 * 154.99590 * 10 9 7 13 13 C 1.53045 * 109.53515 * 181.31138 * 12 10 9 14 14 C 1.53186 * 109.31546 * 298.63333 * 13 12 10 15 15 N 1.46930 * 108.77327 * 54.63955 * 14 13 12 16 16 C 1.34776 * 120.63510 * 126.41044 * 15 14 13 17 17 O 1.21633 * 120.00452 * 175.53542 * 16 15 14 18 18 C 1.47135 * 119.99641 * 355.53819 * 16 15 14 19 19 C 1.36624 * 126.97646 * 51.09789 * 18 16 15 20 20 N 1.34703 * 108.68478 * 179.86753 * 19 18 16 21 21 H 0.97000 * 124.72771 * 180.12238 * 20 19 18 22 22 C 1.36215 * 110.54696 * 0.41468 * 20 19 18 23 23 C 1.35748 * 108.68050 * 359.74401 * 22 20 19 24 24 C 1.48284 * 126.98187 * 179.97438 * 23 22 20 25 25 C 1.39397 * 120.12121 * 129.72865 * 24 23 22 26 26 C 1.38001 * 119.86747 * 179.76994 * 25 24 23 27 27 C 1.38333 * 120.12872 * 0.50721 * 26 25 24 28 28 C 1.38338 * 120.25390 * 359.74471 * 27 26 25 29 29 C 1.38010 * 120.12511 * 359.97438 * 28 27 26 30 30 C 1.46925 * 118.73479 * 306.38492 * 15 14 13 31 31 H 0.96996 * 119.99712 * 359.72038 * 1 2 3 32 32 H 0.97001 * 120.00283 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.46325 * 301.33332 * 12 10 9 34 34 H 1.08999 * 109.45680 * 61.31117 * 12 10 9 35 35 H 1.09000 * 109.49626 * 58.59198 * 13 12 10 36 36 H 1.08999 * 109.49356 * 178.68434 * 13 12 10 37 37 H 1.09002 * 109.58551 * 174.41857 * 14 13 12 38 38 H 1.08993 * 109.59177 * 294.70719 * 14 13 12 39 39 H 1.08007 * 125.65683 * 359.97438 * 19 18 16 40 40 H 1.08001 * 125.66147 * 179.78341 * 22 20 19 41 41 H 1.07995 * 120.06901 * 0.02562 * 25 24 23 42 42 H 1.08001 * 119.93776 * 180.24877 * 26 25 24 43 43 H 1.08002 * 119.87682 * 179.72388 * 27 26 25 44 44 H 1.07995 * 119.93637 * 179.97438 * 28 27 26 45 45 H 1.07994 * 120.06214 * 180.02562 * 29 28 27 46 46 H 1.08998 * 109.58880 * 293.81987 * 30 15 14 47 47 H 1.09010 * 109.58574 * 173.39664 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7464 0.0067 6 1 3.1091 1.6935 1.2091 7 6 2.0103 -1.2022 -0.0057 8 1 3.0902 -1.2022 -0.0102 9 7 1.3255 -2.3880 -0.0058 10 6 2.0580 -3.6568 -0.0113 11 1 2.9716 -3.5520 0.5738 12 6 1.1833 -4.7542 0.5993 13 6 1.9597 -6.0729 0.6240 14 6 2.3141 -6.4791 -0.8099 15 7 3.0309 -5.3689 -1.4523 16 6 4.2314 -5.5699 -2.0310 17 8 4.7774 -4.6629 -2.6298 18 6 4.8814 -6.8866 -1.9383 19 6 4.3283 -8.0991 -2.2391 20 7 5.2492 -9.0586 -2.0248 21 1 5.1025 -10.0069 -2.1666 22 6 6.4131 -8.5123 -1.5750 23 6 6.2594 -7.1658 -1.4962 24 6 7.2721 -6.1768 -1.0543 25 6 7.5424 -5.0552 -1.8367 26 6 8.4825 -4.1357 -1.4182 27 6 9.1634 -4.3306 -0.2299 28 6 8.9030 -5.4445 0.5480 29 6 7.9609 -6.3678 0.1423 30 6 2.4136 -4.0356 -1.4524 31 1 -0.4849 0.8400 0.0041 32 1 0.3555 -2.3880 -0.0015 33 1 0.9085 -4.4756 1.6166 34 1 0.2813 -4.8753 -0.0004 35 1 2.8744 -5.9458 1.2029 36 1 1.3447 -6.8486 1.0803 37 1 2.9510 -7.3635 -0.7923 38 1 1.4014 -6.6970 -1.3643 39 1 3.3204 -8.2613 -2.5919 40 1 7.3096 -9.0594 -1.3236 41 1 7.0144 -4.9040 -2.7666 42 1 8.6899 -3.2643 -2.0215 43 1 9.9015 -3.6107 0.0916 44 1 9.4379 -5.5918 1.4745 45 1 7.7581 -7.2368 0.7506 46 1 1.5088 -4.0518 -2.0600 47 1 3.1161 -3.3078 -1.8588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000929879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:51 Heat of formation + Delta-G solvation = 52.010624 kcal Electronic energy + Delta-G solvation = -29414.618089 eV Core-core repulsion = 25563.105667 eV Total energy + Delta-G solvation = -3851.512422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 5.34 seconds Orbital eigenvalues (eV) -41.40934 -39.32335 -38.69465 -37.01922 -34.38031 -32.56485 -32.23803 -31.16385 -30.77633 -30.21948 -28.52740 -27.92703 -25.32390 -23.90843 -22.93562 -22.55183 -22.01501 -21.73973 -20.10462 -19.62931 -18.94353 -17.88370 -17.02036 -16.47753 -16.41190 -15.36503 -15.12959 -15.00719 -14.73770 -14.44566 -14.24671 -13.96182 -13.84520 -13.74914 -13.39083 -13.28263 -13.25591 -12.97367 -12.84224 -12.48241 -12.29597 -12.17505 -12.01203 -11.26581 -11.09519 -10.96941 -10.89874 -10.76975 -10.58397 -10.48723 -10.17291 -9.76268 -9.68117 -9.49713 -9.32768 -8.99181 -8.76960 -8.54485 -8.18957 -8.05618 -6.93348 -5.73047 -3.02337 1.26759 1.58057 1.87696 2.43640 2.98663 3.17103 3.50329 3.53652 3.55862 3.60489 3.96426 4.63507 4.66868 4.79686 4.89119 5.02148 5.05666 5.08691 5.14555 5.19503 5.29755 5.38970 5.54828 5.56853 5.60720 5.62242 5.66565 5.76597 5.83391 5.87887 6.02575 6.11194 6.14205 6.22527 6.25513 6.29287 6.39889 6.44350 6.57596 6.59688 6.66682 6.77234 6.80839 6.88716 6.92525 7.12014 7.15738 7.22795 7.77682 7.85089 8.45257 8.62083 9.57142 10.11555 10.47116 11.49345 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.003720 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.126691 B = 7524.521341 C = 9361.809366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.125 4.125 13 C -0.129 4.129 14 C 0.102 3.898 15 N -0.601 5.601 16 C 0.584 3.416 17 O -0.536 6.536 18 C -0.193 4.193 19 C 0.030 3.970 20 N -0.550 5.550 21 H 0.418 0.582 22 C -0.003 4.003 23 C -0.085 4.085 24 C -0.019 4.019 25 C -0.085 4.085 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.128 4.128 29 C -0.112 4.112 30 C 0.095 3.905 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.173 0.827 40 H 0.171 0.829 41 H 0.136 0.864 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.059 0.941 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.162 -23.780 -1.530 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.168 4.168 14 C -0.021 4.021 15 N -0.335 5.335 16 C 0.371 3.629 17 O -0.414 6.414 18 C -0.204 4.204 19 C -0.104 4.104 20 N -0.143 5.143 21 H 0.254 0.746 22 C -0.132 4.132 23 C -0.092 4.092 24 C -0.020 4.020 25 C -0.103 4.103 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.146 4.146 29 C -0.130 4.130 30 C -0.029 4.029 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.191 0.809 40 H 0.188 0.812 41 H 0.154 0.846 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.078 0.922 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.530 -23.240 -1.861 26.468 hybrid contribution -0.107 0.526 -0.019 0.537 sum 12.423 -22.714 -1.880 25.958 Atomic orbital electron populations 1.69656 1.05102 1.25784 1.57681 1.24724 0.95490 0.97669 1.02781 0.86277 0.78562 0.83448 0.78019 1.21104 1.21710 1.21226 1.19237 0.91081 0.84008 1.42799 0.91123 1.42368 1.05766 0.99613 1.88157 1.20488 0.94876 0.86350 0.92527 0.93198 1.21819 0.98648 0.94246 1.01667 1.21866 1.00779 0.98002 0.96135 1.21864 0.96651 0.89963 0.93641 1.48133 1.19015 1.10821 1.55489 1.17429 0.80257 0.86613 0.78557 1.90743 1.63847 1.44362 1.42407 1.20455 0.94944 0.92667 1.12311 1.21783 0.95348 0.87186 1.06078 1.41356 1.11065 1.09412 1.52513 0.74593 1.21739 0.90872 0.93125 1.07480 1.19039 0.92244 0.91598 1.06325 1.18099 0.94962 0.94383 0.94537 1.21544 0.95785 0.92583 1.00365 1.21138 0.96811 0.99164 0.96820 1.21178 1.00039 0.97664 0.95161 1.20981 0.98822 0.95072 0.99763 1.21124 0.96686 0.99515 0.95676 1.22728 0.97699 0.81667 1.00795 0.93487 0.78120 0.91568 0.92138 0.91658 0.91334 0.89699 0.91824 0.80946 0.81193 0.84599 0.86124 0.86448 0.86359 0.86410 0.92245 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.87 9.93 -15.06 -0.15 -7.02 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.72 -18.33 5.12 -53.31 -0.27 -18.60 16 10 C 0.17 3.49 2.92 -67.81 -0.20 3.29 16 11 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.13 -2.05 5.35 -26.69 -0.14 -2.19 16 13 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 14 C 0.10 1.24 5.93 -3.71 -0.02 1.22 16 15 N -0.60 -9.82 2.97 -174.14 -0.52 -10.33 16 16 C 0.58 10.12 7.46 -12.65 -0.09 10.03 16 17 O -0.54 -11.27 14.06 5.25 0.07 -11.19 16 18 C -0.19 -2.62 5.29 -103.15 -0.55 -3.16 16 19 C 0.03 0.27 9.55 -16.87 -0.16 0.11 16 20 N -0.55 -3.66 5.88 -12.63 -0.07 -3.74 16 21 H 0.42 1.16 8.96 -40.82 -0.37 0.80 16 22 C 0.00 -0.02 11.80 -16.50 -0.19 -0.22 16 23 C -0.09 -1.08 5.79 -102.93 -0.60 -1.68 16 24 C -0.02 -0.27 5.73 -104.91 -0.60 -0.87 16 25 C -0.08 -1.30 8.87 -39.24 -0.35 -1.65 16 26 C -0.12 -1.69 10.03 -39.63 -0.40 -2.09 16 27 C -0.12 -1.51 10.04 -39.51 -0.40 -1.90 16 28 C -0.13 -1.49 10.03 -39.63 -0.40 -1.89 16 29 C -0.11 -1.36 9.72 -39.24 -0.38 -1.74 16 30 C 0.10 1.89 6.00 -3.71 -0.02 1.87 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.38 10.26 7.80 -40.82 -0.32 9.94 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.86 4.63 -51.93 -0.24 0.61 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.17 1.15 7.65 -52.48 -0.40 0.74 16 40 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 2.32 6.45 -52.49 -0.34 1.98 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.09 2.09 7.03 -51.92 -0.37 1.73 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -35.49 383.86 -10.86 -46.34 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.65 Total: 11.52 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -4.91 Total: -10.11 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.14 Total: -60.44 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.49 -10.86 -46.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000929879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.354 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.34 seconds