Wall clock time and date at job start Sat Apr 11 2020 05:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86793 * 119.99906 * 2 1 4 4 H 1.48507 * 109.47084 * 240.27596 * 3 2 1 5 5 H 1.48495 * 109.47558 * 0.27481 * 3 2 1 6 6 H 1.48503 * 109.47347 * 120.27644 * 3 2 1 7 7 C 1.38812 * 119.99595 * 180.27289 * 2 1 3 8 8 H 1.07997 * 119.99662 * 179.72406 * 7 2 1 9 9 N 1.36934 * 120.00049 * 359.73024 * 7 2 1 10 10 C 1.46505 * 119.99894 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.49743 * 34.92532 * 10 9 7 12 12 C 1.53039 * 109.49813 * 154.99590 * 10 9 7 13 13 C 1.53045 * 109.53515 * 181.31138 * 12 10 9 14 14 C 1.53186 * 109.31546 * 298.63333 * 13 12 10 15 15 N 1.46930 * 108.77327 * 54.63955 * 14 13 12 16 16 C 1.34776 * 120.63510 * 126.41044 * 15 14 13 17 17 O 1.21633 * 120.00452 * 175.53542 * 16 15 14 18 18 C 1.47135 * 119.99641 * 355.53819 * 16 15 14 19 19 C 1.36624 * 126.97646 * 51.09789 * 18 16 15 20 20 N 1.34703 * 108.68478 * 179.86753 * 19 18 16 21 21 H 0.97000 * 124.72771 * 180.12238 * 20 19 18 22 22 C 1.36215 * 110.54696 * 0.41468 * 20 19 18 23 23 C 1.35748 * 108.68050 * 359.74401 * 22 20 19 24 24 C 1.48284 * 126.98187 * 179.97438 * 23 22 20 25 25 C 1.39397 * 120.12121 * 129.72865 * 24 23 22 26 26 C 1.38001 * 119.86747 * 179.76994 * 25 24 23 27 27 C 1.38333 * 120.12872 * 0.50721 * 26 25 24 28 28 C 1.38338 * 120.25390 * 359.74471 * 27 26 25 29 29 C 1.38010 * 120.12511 * 359.97438 * 28 27 26 30 30 C 1.46925 * 118.73479 * 306.38492 * 15 14 13 31 31 H 0.96996 * 119.99712 * 359.72038 * 1 2 3 32 32 H 0.97001 * 120.00283 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.46325 * 301.33332 * 12 10 9 34 34 H 1.08999 * 109.45680 * 61.31117 * 12 10 9 35 35 H 1.09000 * 109.49626 * 58.59198 * 13 12 10 36 36 H 1.08999 * 109.49356 * 178.68434 * 13 12 10 37 37 H 1.09002 * 109.58551 * 174.41857 * 14 13 12 38 38 H 1.08993 * 109.59177 * 294.70719 * 14 13 12 39 39 H 1.08007 * 125.65683 * 359.97438 * 19 18 16 40 40 H 1.08001 * 125.66147 * 179.78341 * 22 20 19 41 41 H 1.07995 * 120.06901 * 0.02562 * 25 24 23 42 42 H 1.08001 * 119.93776 * 180.24877 * 26 25 24 43 43 H 1.08002 * 119.87682 * 179.72388 * 27 26 25 44 44 H 1.07995 * 119.93637 * 179.97438 * 28 27 26 45 45 H 1.07994 * 120.06214 * 180.02562 * 29 28 27 46 46 H 1.08998 * 109.58880 * 293.81987 * 30 15 14 47 47 H 1.09010 * 109.58574 * 173.39664 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7464 0.0067 6 1 3.1091 1.6935 1.2091 7 6 2.0103 -1.2022 -0.0057 8 1 3.0902 -1.2022 -0.0102 9 7 1.3255 -2.3880 -0.0058 10 6 2.0580 -3.6568 -0.0113 11 1 2.9716 -3.5520 0.5738 12 6 1.1833 -4.7542 0.5993 13 6 1.9597 -6.0729 0.6240 14 6 2.3141 -6.4791 -0.8099 15 7 3.0309 -5.3689 -1.4523 16 6 4.2314 -5.5699 -2.0310 17 8 4.7774 -4.6629 -2.6298 18 6 4.8814 -6.8866 -1.9383 19 6 4.3283 -8.0991 -2.2391 20 7 5.2492 -9.0586 -2.0248 21 1 5.1025 -10.0069 -2.1666 22 6 6.4131 -8.5123 -1.5750 23 6 6.2594 -7.1658 -1.4962 24 6 7.2721 -6.1768 -1.0543 25 6 7.5424 -5.0552 -1.8367 26 6 8.4825 -4.1357 -1.4182 27 6 9.1634 -4.3306 -0.2299 28 6 8.9030 -5.4445 0.5480 29 6 7.9609 -6.3678 0.1423 30 6 2.4136 -4.0356 -1.4524 31 1 -0.4849 0.8400 0.0041 32 1 0.3555 -2.3880 -0.0015 33 1 0.9085 -4.4756 1.6166 34 1 0.2813 -4.8753 -0.0004 35 1 2.8744 -5.9458 1.2029 36 1 1.3447 -6.8486 1.0803 37 1 2.9510 -7.3635 -0.7923 38 1 1.4014 -6.6970 -1.3643 39 1 3.3204 -8.2613 -2.5919 40 1 7.3096 -9.0594 -1.3236 41 1 7.0144 -4.9040 -2.7666 42 1 8.6899 -3.2643 -2.0215 43 1 9.9015 -3.6107 0.0916 44 1 9.4379 -5.5918 1.4745 45 1 7.7581 -7.2368 0.7506 46 1 1.5088 -4.0518 -2.0600 47 1 3.1161 -3.3078 -1.8588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000929879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:47 Heat of formation + Delta-G solvation = 29.061420 kcal Electronic energy + Delta-G solvation = -29415.613241 eV Core-core repulsion = 25563.105667 eV Total energy + Delta-G solvation = -3852.507574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.23003 -40.60197 -39.64172 -38.48844 -36.18239 -33.93219 -33.42176 -32.71775 -31.78675 -31.34807 -29.77351 -29.14925 -26.62186 -25.87181 -23.84782 -23.56195 -23.24463 -23.07828 -21.26967 -20.76574 -19.84070 -19.21233 -18.84081 -17.64691 -17.38462 -16.79347 -16.57065 -16.12646 -15.90707 -15.72414 -15.57592 -15.42837 -15.17631 -14.80674 -14.73193 -14.49237 -14.20503 -14.02039 -13.94828 -13.84267 -13.63244 -13.56406 -13.08118 -12.97679 -12.89437 -12.50128 -12.26644 -12.03477 -12.00400 -11.91838 -11.85599 -11.63031 -11.35189 -11.12222 -10.85103 -10.20387 -9.78867 -9.70225 -9.34740 -9.00923 -8.89959 -8.00026 -5.29113 0.31027 0.56912 1.03960 1.41926 1.45155 1.51459 1.56356 1.91947 2.28807 2.50132 2.54924 2.97467 3.32802 3.73765 3.80713 3.94226 4.03707 4.09981 4.12762 4.14850 4.23596 4.28097 4.34048 4.36334 4.39269 4.48446 4.63358 4.65651 4.71832 4.76250 4.83122 4.89531 4.92632 4.99865 5.08191 5.14103 5.20486 5.23754 5.38883 5.42074 5.47298 5.49573 5.63434 5.67645 5.69140 5.83467 5.98044 6.18183 6.23010 6.59636 6.73944 7.29439 7.33094 8.01160 8.27873 9.22447 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.003720 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.126691 B = 7524.521341 C = 9361.809366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.064 4.064 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.060 0.940 9 N -0.729 5.729 10 C 0.169 3.831 11 H 0.023 0.977 12 C -0.117 4.117 13 C -0.120 4.120 14 C 0.099 3.901 15 N -0.601 5.601 16 C 0.576 3.424 17 O -0.591 6.591 18 C -0.239 4.239 19 C 0.059 3.941 20 N -0.524 5.524 21 H 0.442 0.558 22 C 0.027 3.973 23 C -0.128 4.128 24 C -0.029 4.029 25 C -0.117 4.117 26 C -0.142 4.142 27 C -0.132 4.132 28 C -0.127 4.127 29 C -0.114 4.114 30 C 0.111 3.889 31 H 0.254 0.746 32 H 0.378 0.622 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.205 0.795 40 H 0.206 0.794 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.139 0.861 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.059 0.941 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.510 -28.173 -0.202 30.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.257 4.257 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.078 0.922 9 N -0.369 5.369 10 C 0.059 3.941 11 H 0.041 0.959 12 C -0.155 4.155 13 C -0.158 4.158 14 C -0.022 4.022 15 N -0.334 5.334 16 C 0.366 3.634 17 O -0.473 6.473 18 C -0.250 4.250 19 C -0.077 4.077 20 N -0.119 5.119 21 H 0.284 0.716 22 C -0.104 4.104 23 C -0.134 4.134 24 C -0.029 4.029 25 C -0.136 4.136 26 C -0.160 4.160 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.132 4.132 30 C -0.014 4.014 31 H 0.063 0.937 32 H 0.211 0.789 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.222 0.778 40 H 0.222 0.778 41 H 0.121 0.879 42 H 0.137 0.863 43 H 0.157 0.843 44 H 0.168 0.832 45 H 0.165 0.835 46 H 0.077 0.923 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.888 -27.736 -0.522 30.589 hybrid contribution -0.172 1.792 -0.458 1.857 sum 12.716 -25.944 -0.980 28.910 Atomic orbital electron populations 1.69780 1.06220 1.26283 1.58953 1.25444 0.96393 1.00633 1.03225 0.85333 0.77465 0.79711 0.78017 1.21148 1.21157 1.20381 1.19438 0.90850 0.85633 1.42001 0.92222 1.42480 1.05503 1.00540 1.88370 1.20616 0.94378 0.86195 0.92875 0.95925 1.21731 0.98496 0.94462 1.00807 1.21854 1.00380 0.96790 0.96818 1.22229 0.97808 0.89195 0.93014 1.48172 1.19233 1.10232 1.55732 1.18170 0.79931 0.87870 0.77416 1.90713 1.65071 1.46697 1.44778 1.20212 0.96149 0.91942 1.16646 1.22062 0.96482 0.85864 1.03267 1.41366 1.09795 1.10392 1.50365 0.71587 1.22115 0.92027 0.91644 1.04588 1.19196 0.91890 0.93203 1.09143 1.18377 0.95450 0.94182 0.94923 1.21456 0.97079 0.94744 1.00286 1.21291 0.97412 0.99214 0.98077 1.21464 1.00266 0.98735 0.94495 1.21420 0.98386 0.94211 1.00444 1.21473 0.96173 1.00520 0.95016 1.22130 0.96453 0.83294 0.99567 0.93729 0.78896 0.92191 0.91134 0.92805 0.86995 0.86682 0.89292 0.77818 0.77753 0.87867 0.86312 0.84296 0.83195 0.83498 0.92299 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.16 13.06 21.65 0.28 -59.88 16 2 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.97 48.89 29.55 68.60 2.03 50.92 16 4 H -0.28 -14.32 7.11 99.48 0.71 -13.62 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 7 C -0.25 -14.81 9.93 84.03 0.83 -13.98 16 8 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 9 N -0.73 -38.91 5.12 -322.57 -1.65 -40.56 16 10 C 0.17 7.32 2.92 45.07 0.13 7.45 16 11 H 0.02 1.09 8.08 -2.39 -0.02 1.07 16 12 C -0.12 -3.73 5.35 30.62 0.16 -3.56 16 13 C -0.12 -2.72 6.08 30.67 0.19 -2.54 16 14 C 0.10 2.10 5.93 86.36 0.51 2.61 16 15 N -0.60 -19.90 2.97 -823.10 -2.45 -22.34 16 16 C 0.58 20.84 7.46 86.58 0.65 21.49 16 17 O -0.59 -27.39 14.06 -4.14 -0.06 -27.45 16 18 C -0.24 -6.24 5.29 -18.91 -0.10 -6.34 16 19 C 0.06 0.85 9.55 83.87 0.80 1.65 16 20 N -0.52 -4.29 5.88 -193.88 -1.14 -5.42 16 21 H 0.44 -0.31 8.96 -92.71 -0.83 -1.14 16 22 C 0.03 0.36 11.80 83.43 0.98 1.34 16 23 C -0.13 -3.10 5.79 -18.77 -0.11 -3.21 16 24 C -0.03 -0.81 5.73 -20.05 -0.11 -0.93 16 25 C -0.12 -3.97 8.87 22.49 0.20 -3.77 16 26 C -0.14 -4.31 10.03 22.24 0.22 -4.09 16 27 C -0.13 -3.27 10.04 22.32 0.22 -3.05 16 28 C -0.13 -2.76 10.03 22.24 0.22 -2.54 16 29 C -0.11 -2.59 9.72 22.49 0.22 -2.37 16 30 C 0.11 4.69 6.00 86.36 0.52 5.21 16 31 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.38 20.92 7.80 -92.71 -0.72 20.19 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.12 1.80 4.63 -2.39 -0.01 1.79 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.21 1.59 7.65 -2.91 -0.02 1.57 16 40 H 0.21 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.10 4.07 6.45 -2.91 -0.02 4.05 16 42 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 44 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 46 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.04 2.14 7.03 -2.38 -0.02 2.13 16 Total: -1.00 -86.43 383.86 2.47 -83.95 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.55 Total: 30.80 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 6.01 Total: -10.01 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -4.96 Total: -128.21 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.92 kcal Total: -86.43 2.47 -83.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000929879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.014 kcal (2) G-P(sol) polarization free energy of solvation -86.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds