Wall clock time and date at job start Sat Apr 11 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99611 * 2 1 4 4 H 1.48499 * 109.47251 * 270.27524 * 3 2 1 5 5 H 1.48497 * 109.47504 * 30.27582 * 3 2 1 6 6 H 1.48497 * 109.47314 * 150.27377 * 3 2 1 7 7 C 1.38813 * 120.00148 * 180.27210 * 2 1 3 8 8 H 1.08001 * 119.99513 * 179.72438 * 7 2 1 9 9 N 1.36929 * 119.99999 * 359.73092 * 7 2 1 10 10 C 1.46508 * 119.99845 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.49484 * 34.93051 * 10 9 7 12 12 C 1.53035 * 109.49762 * 154.99605 * 10 9 7 13 13 C 1.53039 * 109.53811 * 181.31502 * 12 10 9 14 14 C 1.53190 * 109.31410 * 298.63408 * 13 12 10 15 15 N 1.46931 * 108.77396 * 54.63375 * 14 13 12 16 16 C 1.34776 * 120.63170 * 126.41113 * 15 14 13 17 17 O 1.21708 * 120.00410 * 179.84870 * 16 15 14 18 18 C 1.46583 * 119.99732 * 359.85494 * 16 15 14 19 19 C 1.38053 * 126.00484 * 209.11565 * 18 16 15 20 20 C 1.39363 * 107.44245 * 179.84220 * 19 18 16 21 21 C 1.37829 * 107.65290 * 0.41681 * 20 19 18 22 22 C 1.47807 * 125.82213 * 179.70731 * 21 20 19 23 23 C 1.39591 * 120.14402 * 179.76812 * 22 21 20 24 24 C 1.37952 * 119.85106 * 179.71729 * 23 22 21 25 25 C 1.38369 * 120.14665 * 0.57608 * 24 23 22 26 26 C 1.38363 * 120.29144 * 359.67770 * 25 24 23 27 27 C 1.37954 * 120.15126 * 0.04124 * 26 25 24 28 28 N 1.36407 * 108.35057 * 359.74189 * 21 20 19 29 29 H 0.97000 * 125.71576 * 180.02562 * 28 21 20 30 30 C 1.46930 * 118.73814 * 306.39256 * 15 14 13 31 31 H 0.96992 * 120.00744 * 359.72407 * 1 2 3 32 32 H 0.96994 * 120.00269 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46165 * 301.33807 * 12 10 9 34 34 H 1.09001 * 109.46425 * 61.30759 * 12 10 9 35 35 H 1.08998 * 109.49654 * 58.58949 * 13 12 10 36 36 H 1.09008 * 109.49773 * 178.68146 * 13 12 10 37 37 H 1.08994 * 109.58876 * 174.42139 * 14 13 12 38 38 H 1.08998 * 109.58578 * 294.70789 * 14 13 12 39 39 H 1.08005 * 126.28161 * 359.97438 * 19 18 16 40 40 H 1.07995 * 126.17633 * 180.14084 * 20 19 18 41 41 H 1.08003 * 120.07559 * 359.97438 * 23 22 21 42 42 H 1.08007 * 119.92971 * 180.27394 * 24 23 22 43 43 H 1.07994 * 119.85438 * 179.69576 * 25 24 23 44 44 H 1.07996 * 119.92063 * 180.02562 * 26 25 24 45 45 H 1.07995 * 120.07584 * 179.97438 * 27 26 25 46 46 H 1.08996 * 109.58353 * 293.82411 * 30 15 14 47 47 H 1.09001 * 109.58110 * 173.39191 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4917 2.0499 -1.4000 5 1 1.4504 2.6510 0.7058 6 1 3.5505 1.4387 0.6942 7 6 2.0103 -1.2021 -0.0057 8 1 3.0903 -1.2020 -0.0102 9 7 1.3257 -2.3880 -0.0058 10 6 2.0583 -3.6567 -0.0124 11 1 2.9723 -3.5520 0.5722 12 6 1.1842 -4.7544 0.5984 13 6 1.9606 -6.0731 0.6220 14 6 2.3141 -6.4786 -0.8123 15 7 3.0302 -5.3681 -1.4549 16 6 4.2303 -5.5687 -2.0345 17 8 4.8122 -4.6412 -2.5659 18 6 4.8347 -6.9041 -2.0249 19 6 6.1866 -7.1832 -2.0373 20 6 6.3272 -8.5696 -2.0181 21 6 5.0627 -9.1178 -2.0038 22 6 4.7459 -10.5614 -1.9875 23 6 3.4166 -10.9871 -1.9690 24 6 3.1276 -12.3360 -1.9598 25 6 4.1521 -13.2661 -1.9567 26 6 5.4718 -12.8508 -1.9696 27 6 5.7746 -11.5049 -1.9848 28 7 4.1537 -8.1007 -2.0080 29 1 3.1892 -8.2034 -2.0000 30 6 2.4129 -4.0348 -1.4539 31 1 -0.4851 0.8399 0.0040 32 1 0.3557 -2.3881 -0.0015 33 1 0.9100 -4.4762 1.6160 34 1 0.2816 -4.8754 -0.0006 35 1 2.8758 -5.9461 1.2003 36 1 1.3460 -6.8490 1.0785 37 1 2.9509 -7.3630 -0.7956 38 1 1.4009 -6.6963 -1.3661 39 1 6.9884 -6.4597 -2.0561 40 1 7.2588 -9.1159 -2.0191 41 1 2.6161 -10.2621 -1.9662 42 1 2.0995 -12.6668 -1.9500 43 1 3.9205 -14.3209 -1.9445 44 1 6.2667 -13.5819 -1.9676 45 1 6.8051 -11.1821 -1.9944 46 1 1.5075 -4.0509 -2.0607 47 1 3.1150 -3.3068 -1.8604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001056447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:08 Heat of formation + Delta-G solvation = 60.020098 kcal Electronic energy + Delta-G solvation = -28560.227415 eV Core-core repulsion = 24709.062310 eV Total energy + Delta-G solvation = -3851.165105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.72479 -39.67515 -38.91392 -37.29519 -34.60372 -32.58609 -32.24705 -31.86263 -31.27652 -30.86903 -28.88393 -27.89385 -25.49981 -24.08501 -23.38253 -23.07404 -22.03997 -21.36341 -20.87769 -19.95920 -19.56860 -17.92797 -17.11858 -17.06438 -16.30390 -15.69741 -15.53934 -15.22160 -14.81604 -14.60725 -14.43351 -14.22922 -13.97824 -13.91173 -13.69060 -13.45626 -13.43733 -13.04474 -12.87744 -12.77535 -12.68398 -12.41829 -12.28014 -11.69743 -11.44267 -11.39186 -11.10328 -10.86973 -10.71183 -10.64344 -10.22973 -9.97234 -9.88272 -9.78389 -9.66315 -9.38740 -9.19393 -9.10854 -8.47020 -7.85582 -7.02948 -5.80471 -3.10592 0.47546 0.97961 1.66442 2.54858 2.71629 3.02209 3.42214 3.44837 3.50253 3.51902 3.52436 4.25738 4.40203 4.48430 4.52985 4.56533 4.70274 4.71517 4.94292 4.97821 5.03897 5.08402 5.13963 5.22821 5.36470 5.44502 5.45594 5.49229 5.58785 5.72224 5.77845 5.84519 5.89613 5.94051 6.03837 6.07111 6.09549 6.11499 6.14676 6.27866 6.41960 6.51921 6.55632 6.63945 6.72424 6.78002 6.94200 7.08358 7.53077 7.70631 8.26137 8.37571 9.49477 10.02491 10.37898 11.41678 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.002285 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.639123 B =12251.534050 C =13129.677777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.126 4.126 13 C -0.127 4.127 14 C 0.087 3.913 15 N -0.603 5.603 16 C 0.580 3.420 17 O -0.524 6.524 18 C -0.024 4.024 19 C -0.115 4.115 20 C -0.178 4.178 21 C 0.065 3.935 22 C -0.014 4.014 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.101 4.101 28 N -0.533 5.533 29 H 0.419 0.581 30 C 0.093 3.907 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.063 0.937 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 -29.439 -2.544 30.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.164 4.164 13 C -0.166 4.166 14 C -0.037 4.037 15 N -0.336 5.336 16 C 0.367 3.633 17 O -0.400 6.400 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.202 4.202 21 C -0.050 4.050 22 C -0.015 4.015 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.120 4.120 28 N -0.134 5.134 29 H 0.262 0.738 30 C -0.031 4.031 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.081 0.919 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.499 -28.689 -2.816 29.787 hybrid contribution -0.488 0.826 -0.029 0.960 sum 7.011 -27.863 -2.845 28.872 Atomic orbital electron populations 1.69656 1.05130 1.25810 1.57420 1.24755 0.95535 0.97803 1.02589 0.86173 0.78710 0.83599 0.77648 1.21562 1.21772 1.20634 1.19275 0.91141 0.83927 1.43098 0.90976 1.42368 1.05793 0.99553 1.88075 1.20491 0.95038 0.86481 0.92302 0.92958 1.21830 0.98634 0.93956 1.02004 1.21852 1.01171 0.98413 0.95190 1.22166 0.96851 0.89715 0.94944 1.48243 1.18824 1.11308 1.55225 1.17163 0.80788 0.86310 0.79011 1.90866 1.61483 1.42482 1.45191 1.20595 0.92695 0.84838 1.15659 1.21199 0.93635 0.95718 1.03546 1.21067 0.95617 0.93796 1.09743 1.19127 0.89305 0.86968 1.09604 1.18095 0.93574 0.89177 1.00617 1.21107 0.95168 0.96318 1.01594 1.21050 0.99554 0.92682 0.99620 1.21249 0.92884 0.99714 1.00298 1.21108 0.96732 0.95565 0.99659 1.21130 0.98882 0.92326 0.99635 1.42793 1.08806 1.05132 1.56696 0.73772 1.22865 0.97850 0.81103 1.01295 0.93449 0.78061 0.91194 0.92007 0.91311 0.90934 0.90172 0.91193 0.83215 0.83678 0.86653 0.85724 0.85902 0.85575 0.85212 0.91867 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.72 -17.70 5.12 -53.31 -0.27 -17.97 16 10 C 0.17 3.31 2.92 -67.81 -0.20 3.11 16 11 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 12 C -0.13 -1.93 5.35 -26.69 -0.14 -2.08 16 13 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 14 C 0.09 0.98 5.55 -3.71 -0.02 0.96 16 15 N -0.60 -9.32 2.97 -174.34 -0.52 -9.84 16 16 C 0.58 9.73 7.62 -12.90 -0.10 9.63 16 17 O -0.52 -10.90 16.41 5.18 0.09 -10.81 16 18 C -0.02 -0.32 6.35 -81.94 -0.52 -0.84 16 19 C -0.12 -1.45 10.72 -39.23 -0.42 -1.87 16 20 C -0.18 -1.84 10.22 -39.31 -0.40 -2.24 16 21 C 0.07 0.65 6.93 -82.07 -0.57 0.09 16 22 C -0.01 -0.12 5.87 -104.97 -0.62 -0.73 16 23 C -0.12 -0.93 9.70 -39.18 -0.38 -1.31 16 24 C -0.11 -0.72 10.03 -39.64 -0.40 -1.12 16 25 C -0.12 -0.75 10.04 -39.49 -0.40 -1.14 16 26 C -0.11 -0.70 10.03 -39.64 -0.40 -1.10 16 27 C -0.10 -0.74 9.57 -39.18 -0.37 -1.11 16 28 N -0.53 -5.55 4.64 -5.81 -0.03 -5.58 16 29 H 0.42 3.49 5.54 -40.82 -0.23 3.27 16 30 C 0.09 1.75 6.02 -3.71 -0.02 1.73 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.39 9.97 7.80 -40.82 -0.32 9.65 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.08 0.77 3.89 -51.93 -0.20 0.57 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.15 1.82 8.06 -52.48 -0.42 1.40 16 40 H 0.15 1.13 7.26 -52.49 -0.38 0.75 16 41 H 0.12 0.70 7.14 -52.48 -0.37 0.32 16 42 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.13 0.76 6.98 -52.49 -0.37 0.39 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.09 2.08 7.00 -51.93 -0.36 1.71 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -33.52 382.42 -11.06 -44.58 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.43 Total: 10.42 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -5.36 Total: -7.04 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.09 Total: -60.61 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.52 -11.06 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001056447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.600 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds