Wall clock time and date at job start Sat Apr 11 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99611 * 2 1 4 4 H 1.48499 * 109.47251 * 270.27524 * 3 2 1 5 5 H 1.48497 * 109.47504 * 30.27582 * 3 2 1 6 6 H 1.48497 * 109.47314 * 150.27377 * 3 2 1 7 7 C 1.38813 * 120.00148 * 180.27210 * 2 1 3 8 8 H 1.08001 * 119.99513 * 179.72438 * 7 2 1 9 9 N 1.36929 * 119.99999 * 359.73092 * 7 2 1 10 10 C 1.46508 * 119.99845 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.49484 * 34.93051 * 10 9 7 12 12 C 1.53035 * 109.49762 * 154.99605 * 10 9 7 13 13 C 1.53039 * 109.53811 * 181.31502 * 12 10 9 14 14 C 1.53190 * 109.31410 * 298.63408 * 13 12 10 15 15 N 1.46931 * 108.77396 * 54.63375 * 14 13 12 16 16 C 1.34776 * 120.63170 * 126.41113 * 15 14 13 17 17 O 1.21708 * 120.00410 * 179.84870 * 16 15 14 18 18 C 1.46583 * 119.99732 * 359.85494 * 16 15 14 19 19 C 1.38053 * 126.00484 * 209.11565 * 18 16 15 20 20 C 1.39363 * 107.44245 * 179.84220 * 19 18 16 21 21 C 1.37829 * 107.65290 * 0.41681 * 20 19 18 22 22 C 1.47807 * 125.82213 * 179.70731 * 21 20 19 23 23 C 1.39591 * 120.14402 * 179.76812 * 22 21 20 24 24 C 1.37952 * 119.85106 * 179.71729 * 23 22 21 25 25 C 1.38369 * 120.14665 * 0.57608 * 24 23 22 26 26 C 1.38363 * 120.29144 * 359.67770 * 25 24 23 27 27 C 1.37954 * 120.15126 * 0.04124 * 26 25 24 28 28 N 1.36407 * 108.35057 * 359.74189 * 21 20 19 29 29 H 0.97000 * 125.71576 * 180.02562 * 28 21 20 30 30 C 1.46930 * 118.73814 * 306.39256 * 15 14 13 31 31 H 0.96992 * 120.00744 * 359.72407 * 1 2 3 32 32 H 0.96994 * 120.00269 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46165 * 301.33807 * 12 10 9 34 34 H 1.09001 * 109.46425 * 61.30759 * 12 10 9 35 35 H 1.08998 * 109.49654 * 58.58949 * 13 12 10 36 36 H 1.09008 * 109.49773 * 178.68146 * 13 12 10 37 37 H 1.08994 * 109.58876 * 174.42139 * 14 13 12 38 38 H 1.08998 * 109.58578 * 294.70789 * 14 13 12 39 39 H 1.08005 * 126.28161 * 359.97438 * 19 18 16 40 40 H 1.07995 * 126.17633 * 180.14084 * 20 19 18 41 41 H 1.08003 * 120.07559 * 359.97438 * 23 22 21 42 42 H 1.08007 * 119.92971 * 180.27394 * 24 23 22 43 43 H 1.07994 * 119.85438 * 179.69576 * 25 24 23 44 44 H 1.07996 * 119.92063 * 180.02562 * 26 25 24 45 45 H 1.07995 * 120.07584 * 179.97438 * 27 26 25 46 46 H 1.08996 * 109.58353 * 293.82411 * 30 15 14 47 47 H 1.09001 * 109.58110 * 173.39191 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4917 2.0499 -1.4000 5 1 1.4504 2.6510 0.7058 6 1 3.5505 1.4387 0.6942 7 6 2.0103 -1.2021 -0.0057 8 1 3.0903 -1.2020 -0.0102 9 7 1.3257 -2.3880 -0.0058 10 6 2.0583 -3.6567 -0.0124 11 1 2.9723 -3.5520 0.5722 12 6 1.1842 -4.7544 0.5984 13 6 1.9606 -6.0731 0.6220 14 6 2.3141 -6.4786 -0.8123 15 7 3.0302 -5.3681 -1.4549 16 6 4.2303 -5.5687 -2.0345 17 8 4.8122 -4.6412 -2.5659 18 6 4.8347 -6.9041 -2.0249 19 6 6.1866 -7.1832 -2.0373 20 6 6.3272 -8.5696 -2.0181 21 6 5.0627 -9.1178 -2.0038 22 6 4.7459 -10.5614 -1.9875 23 6 3.4166 -10.9871 -1.9690 24 6 3.1276 -12.3360 -1.9598 25 6 4.1521 -13.2661 -1.9567 26 6 5.4718 -12.8508 -1.9696 27 6 5.7746 -11.5049 -1.9848 28 7 4.1537 -8.1007 -2.0080 29 1 3.1892 -8.2034 -2.0000 30 6 2.4129 -4.0348 -1.4539 31 1 -0.4851 0.8399 0.0040 32 1 0.3557 -2.3881 -0.0015 33 1 0.9100 -4.4762 1.6160 34 1 0.2816 -4.8754 -0.0006 35 1 2.8758 -5.9461 1.2003 36 1 1.3460 -6.8490 1.0785 37 1 2.9509 -7.3630 -0.7956 38 1 1.4009 -6.6963 -1.3661 39 1 6.9884 -6.4597 -2.0561 40 1 7.2588 -9.1159 -2.0191 41 1 2.6161 -10.2621 -1.9662 42 1 2.0995 -12.6668 -1.9500 43 1 3.9205 -14.3209 -1.9445 44 1 6.2667 -13.5819 -1.9676 45 1 6.8051 -11.1821 -1.9944 46 1 1.5075 -4.0509 -2.0607 47 1 3.1150 -3.3068 -1.8604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001056447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:06 Heat of formation + Delta-G solvation = 40.159364 kcal Electronic energy + Delta-G solvation = -28561.088641 eV Core-core repulsion = 24709.062310 eV Total energy + Delta-G solvation = -3852.026331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.65278 -40.78756 -39.56246 -38.70038 -36.32966 -34.09263 -32.97566 -32.87771 -32.56678 -31.57252 -30.30196 -29.06011 -26.66835 -25.96245 -24.18420 -23.64606 -23.41180 -22.40639 -21.75469 -21.14850 -20.57552 -19.23206 -18.86551 -17.97529 -17.20745 -16.94363 -16.61271 -16.38071 -15.91569 -15.68123 -15.56563 -15.34031 -15.30261 -15.07961 -14.84354 -14.60333 -14.25002 -14.11563 -14.02538 -13.81751 -13.59102 -13.54310 -13.43452 -13.09903 -12.92986 -12.58976 -12.23356 -12.18532 -12.07844 -11.98865 -11.87245 -11.75227 -11.41851 -11.27296 -11.08860 -10.43286 -10.07466 -9.88577 -9.85219 -9.06988 -8.65019 -8.01137 -5.30543 -0.19109 0.51496 0.73505 1.42876 1.44954 1.52955 1.70946 1.72481 1.92890 2.30209 2.51473 3.00095 3.31467 3.43250 3.59449 3.62869 3.90643 3.92441 3.94969 4.07052 4.08879 4.19904 4.25482 4.29209 4.31783 4.39480 4.43252 4.58621 4.62355 4.63364 4.75740 4.80211 4.87720 4.93701 5.04287 5.05668 5.12791 5.15598 5.29858 5.35202 5.38636 5.43734 5.50196 5.54988 5.64355 5.77959 5.82074 6.06554 6.21399 6.25502 6.34075 6.97435 7.28423 7.99350 8.25391 9.21259 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.002285 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.639123 B =12251.534050 C =13129.677777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.968 3.032 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.030 0.970 12 C -0.117 4.117 13 C -0.119 4.119 14 C 0.083 3.917 15 N -0.600 5.600 16 C 0.576 3.424 17 O -0.580 6.580 18 C -0.054 4.054 19 C -0.121 4.121 20 C -0.187 4.187 21 C 0.089 3.911 22 C -0.040 4.040 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.105 4.105 28 N -0.522 5.522 29 H 0.429 0.571 30 C 0.108 3.892 31 H 0.253 0.747 32 H 0.378 0.622 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.171 0.829 41 H 0.127 0.873 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.141 0.859 46 H 0.065 0.935 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 -33.526 -2.158 34.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.057 3.943 11 H 0.048 0.952 12 C -0.155 4.155 13 C -0.157 4.157 14 C -0.039 4.039 15 N -0.332 5.332 16 C 0.366 3.634 17 O -0.460 6.460 18 C -0.167 4.167 19 C -0.147 4.147 20 C -0.211 4.211 21 C -0.028 4.028 22 C -0.041 4.041 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.124 4.124 28 N -0.125 5.125 29 H 0.274 0.726 30 C -0.017 4.017 31 H 0.062 0.938 32 H 0.211 0.789 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.161 0.839 40 H 0.188 0.812 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.159 0.841 46 H 0.083 0.917 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.429 -32.841 -2.410 33.757 hybrid contribution -0.426 1.830 -0.158 1.886 sum 7.003 -31.010 -2.568 31.895 Atomic orbital electron populations 1.69779 1.06255 1.26217 1.58968 1.25485 0.96430 1.00793 1.03310 0.85227 0.77775 0.79876 0.77431 1.21582 1.21471 1.19905 1.19504 0.91038 0.85464 1.41807 0.91748 1.42480 1.05538 1.00494 1.88261 1.20643 0.94727 0.86224 0.92692 0.95155 1.21730 0.98485 0.94063 1.01241 1.21839 1.00933 0.97338 0.95615 1.22518 0.97989 0.88751 0.94638 1.48224 1.18812 1.10960 1.55233 1.17624 0.80526 0.87162 0.78053 1.90822 1.62948 1.44587 1.47678 1.20007 0.93070 0.84171 1.19461 1.21368 0.93309 0.97003 1.03053 1.21335 0.97011 0.92675 1.10031 1.19476 0.89011 0.87652 1.06632 1.18163 0.94633 0.88169 1.03152 1.21351 0.95077 0.97281 1.01075 1.21353 1.00806 0.92362 0.99310 1.21635 0.92789 1.00935 0.98601 1.21425 0.97630 0.95561 0.99108 1.21383 0.99293 0.92752 0.98972 1.42645 1.09345 1.04121 1.56356 0.72619 1.22307 0.96822 0.82448 1.00163 0.93782 0.78879 0.91721 0.90983 0.92207 0.86707 0.87955 0.88385 0.83871 0.81199 0.85470 0.83851 0.83752 0.83438 0.84098 0.91711 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.98 13.06 21.65 0.28 -58.70 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 47.82 29.55 68.60 2.03 49.84 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.25 -14.21 9.93 84.03 0.83 -13.38 16 8 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 9 N -0.73 -37.18 5.12 -322.58 -1.65 -38.83 16 10 C 0.17 6.78 2.92 45.07 0.13 6.91 16 11 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 12 C -0.12 -3.47 5.35 30.62 0.16 -3.31 16 13 C -0.12 -2.49 6.08 30.67 0.19 -2.31 16 14 C 0.08 1.68 5.55 86.36 0.48 2.15 16 15 N -0.60 -18.77 2.97 -823.71 -2.45 -21.22 16 16 C 0.58 20.10 7.62 86.42 0.66 20.76 16 17 O -0.58 -25.88 16.41 -4.37 -0.07 -25.95 16 18 C -0.05 -1.45 6.35 40.36 0.26 -1.19 16 19 C -0.12 -3.05 10.72 22.50 0.24 -2.81 16 20 C -0.19 -3.57 10.22 22.44 0.23 -3.34 16 21 C 0.09 1.59 6.93 40.87 0.28 1.87 16 22 C -0.04 -0.58 5.87 -20.09 -0.12 -0.70 16 23 C -0.13 -1.53 9.70 22.53 0.22 -1.32 16 24 C -0.12 -1.14 10.03 22.23 0.22 -0.91 16 25 C -0.12 -1.02 10.04 22.33 0.22 -0.80 16 26 C -0.12 -1.06 10.03 22.23 0.22 -0.84 16 27 C -0.11 -1.22 9.57 22.53 0.22 -1.01 16 28 N -0.52 -9.93 4.64 -172.30 -0.80 -10.73 16 29 H 0.43 6.00 5.54 -92.71 -0.51 5.48 16 30 C 0.11 4.25 6.02 86.36 0.52 4.77 16 31 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.38 20.16 7.80 -92.71 -0.72 19.44 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.10 1.66 3.89 -2.39 -0.01 1.65 16 38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.17 2.24 7.26 -2.91 -0.02 2.22 16 41 H 0.13 1.09 7.14 -2.91 -0.02 1.07 16 42 H 0.14 0.75 8.06 -2.91 -0.02 0.73 16 43 H 0.14 0.55 8.06 -2.91 -0.02 0.52 16 44 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 45 H 0.14 1.22 6.98 -2.91 -0.02 1.20 16 46 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.05 2.46 7.00 -2.39 -0.02 2.44 16 Total: -1.00 -77.00 382.42 2.55 -74.45 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.23 Total: 30.05 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.44 Total: 1.08 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -4.62 Total: -129.47 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.07 Total: -25.95 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.84 kcal Total: -77.00 2.55 -74.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001056447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.610 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds