Wall clock time and date at job start Sat Apr 11 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48494 * 109.47326 * 269.99969 * 3 2 1 5 5 H 1.48495 * 109.47054 * 30.00454 * 3 2 1 6 6 H 1.48507 * 109.47101 * 150.00059 * 3 2 1 7 7 C 1.38812 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00158 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.49742 * 325.00279 * 10 9 7 12 12 C 1.53037 * 109.52165 * 204.91763 * 10 9 7 13 13 C 1.53048 * 109.53697 * 178.66780 * 12 10 9 14 14 C 1.53195 * 109.30854 * 61.36502 * 13 12 10 15 15 N 1.46924 * 108.77757 * 305.36482 * 14 13 12 16 16 C 1.34781 * 120.63321 * 233.63394 * 15 14 13 17 17 O 1.21704 * 120.00005 * 173.18634 * 16 15 14 18 18 C 1.46584 * 119.99753 * 353.18371 * 16 15 14 19 19 C 1.38058 * 126.00459 * 155.78966 * 18 16 15 20 20 C 1.39365 * 107.43917 * 179.84475 * 19 18 16 21 21 C 1.37828 * 107.65506 * 0.42178 * 20 19 18 22 22 C 1.47801 * 125.82305 * 179.73885 * 21 20 19 23 23 C 1.39589 * 120.14523 * 179.72153 * 22 21 20 24 24 C 1.37963 * 119.85291 * 179.78970 * 23 22 21 25 25 C 1.38366 * 120.14163 * 0.48992 * 24 23 22 26 26 C 1.38356 * 120.29851 * 359.74226 * 25 24 23 27 27 C 1.37962 * 120.14824 * 0.02562 * 26 25 24 28 28 N 1.36406 * 108.35032 * 359.73724 * 21 20 19 29 29 H 0.96999 * 125.71781 * 179.97438 * 28 21 20 30 30 C 1.46921 * 118.73886 * 53.61211 * 15 14 13 31 31 H 0.96994 * 120.00224 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99998 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.46268 * 298.68703 * 12 10 9 34 34 H 1.08997 * 109.46436 * 58.65134 * 12 10 9 35 35 H 1.09000 * 109.49559 * 301.41716 * 13 12 10 36 36 H 1.08992 * 109.52655 * 181.33296 * 13 12 10 37 37 H 1.09000 * 109.58486 * 185.57784 * 14 13 12 38 38 H 1.08997 * 109.59117 * 65.15449 * 14 13 12 39 39 H 1.08002 * 126.27820 * 359.97337 * 19 18 16 40 40 H 1.07997 * 126.16789 * 180.16292 * 20 19 18 41 41 H 1.07997 * 120.07859 * 0.02621 * 23 22 21 42 42 H 1.07998 * 119.92875 * 180.25501 * 24 23 22 43 43 H 1.07997 * 119.84641 * 179.76647 * 25 24 23 44 44 H 1.07999 * 119.92684 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.07576 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.58841 * 186.60578 * 30 15 14 47 47 H 1.09004 * 109.58896 * 66.17474 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 1 2.9690 -3.5505 -0.5919 12 6 1.1810 -4.7532 -0.6114 13 6 1.9579 -6.0715 -0.6432 14 6 2.3200 -6.4807 0.7879 15 7 3.0393 -5.3717 1.4293 16 6 4.2433 -5.5732 2.0006 17 8 4.8847 -4.6269 2.4182 18 6 4.7801 -6.9321 2.1190 19 6 6.1141 -7.2712 2.2266 20 6 6.1858 -8.6598 2.3202 21 6 4.8990 -9.1499 2.2591 22 6 4.5126 -10.5753 2.3167 23 6 3.1668 -10.9401 2.2498 24 6 2.8132 -12.2727 2.2998 25 6 3.7884 -13.2461 2.4260 26 6 5.1238 -12.8911 2.4976 27 6 5.4914 -11.5624 2.4441 28 7 4.0430 -8.0949 2.1364 29 1 3.0770 -8.1540 2.0718 30 6 2.4214 -4.0388 1.4357 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 0.2819 -4.8761 -0.0076 34 1 0.9008 -4.4724 -1.6266 35 1 2.8697 -5.9424 -1.2264 36 1 1.3416 -6.8467 -1.0984 37 1 2.9571 -7.3648 0.7650 38 1 1.4100 -6.6980 1.3472 39 1 6.9487 -6.5859 2.2384 40 1 7.0873 -9.2463 2.4184 41 1 2.4044 -10.1811 2.1554 42 1 1.7727 -12.5565 2.2440 43 1 3.5060 -14.2876 2.4684 44 1 5.8801 -13.6558 2.5957 45 1 6.5340 -11.2867 2.5005 46 1 3.1255 -3.3116 1.8401 47 1 1.5196 -4.0569 2.0477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001056448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:13 Heat of formation + Delta-G solvation = 58.632351 kcal Electronic energy + Delta-G solvation = -28550.572068 eV Core-core repulsion = 24699.346786 eV Total energy + Delta-G solvation = -3851.225282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71734 -39.67602 -38.91544 -37.29139 -34.60360 -32.59204 -32.25107 -31.84626 -31.27428 -30.86362 -28.88021 -27.89428 -25.50021 -24.08461 -23.38459 -23.07400 -22.04649 -21.35605 -20.85074 -19.95837 -19.58925 -17.91563 -17.11522 -17.05676 -16.29087 -15.69165 -15.53463 -15.23369 -14.83001 -14.61032 -14.41007 -14.24154 -13.98976 -13.87308 -13.68476 -13.48267 -13.43391 -13.05437 -12.87013 -12.80034 -12.67457 -12.41411 -12.29375 -11.69960 -11.44391 -11.39210 -11.10769 -10.86760 -10.71858 -10.63782 -10.22472 -9.96569 -9.87544 -9.79095 -9.66396 -9.38856 -9.19876 -9.10743 -8.46591 -7.86214 -7.02520 -5.80222 -3.10311 0.46906 0.97757 1.64449 2.55114 2.72587 3.04486 3.42754 3.44662 3.50162 3.52230 3.52933 4.25577 4.40432 4.49283 4.52998 4.56763 4.70169 4.71169 4.93581 4.97676 5.03585 5.08128 5.13466 5.22036 5.35667 5.44814 5.45405 5.49112 5.58567 5.72230 5.77618 5.84380 5.89437 5.93607 6.03680 6.06913 6.09371 6.11416 6.14835 6.27641 6.42134 6.51699 6.55058 6.64355 6.72697 6.78411 6.94567 7.08807 7.53620 7.71228 8.26424 8.37894 9.49782 10.02810 10.38194 11.41932 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023582 B = 0.002282 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.064066 B =12267.197423 C =13171.909356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.126 4.126 13 C -0.127 4.127 14 C 0.088 3.912 15 N -0.605 5.605 16 C 0.581 3.419 17 O -0.524 6.524 18 C -0.026 4.026 19 C -0.114 4.114 20 C -0.179 4.179 21 C 0.067 3.933 22 C -0.014 4.014 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.101 4.101 28 N -0.533 5.533 29 H 0.419 0.581 30 C 0.093 3.907 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.094 0.906 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.692 -29.539 3.518 30.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.164 4.164 13 C -0.166 4.166 14 C -0.035 4.035 15 N -0.339 5.339 16 C 0.368 3.632 17 O -0.399 6.399 18 C -0.140 4.140 19 C -0.139 4.139 20 C -0.203 4.203 21 C -0.049 4.049 22 C -0.015 4.015 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.120 4.120 28 N -0.134 5.134 29 H 0.262 0.738 30 C -0.031 4.031 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.134 0.866 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.112 0.888 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.943 -28.768 3.726 29.827 hybrid contribution -0.497 0.847 -0.009 0.982 sum 6.446 -27.921 3.717 28.895 Atomic orbital electron populations 1.69659 1.05127 1.25797 1.57457 1.24755 0.95535 0.97798 1.02607 0.86179 0.78846 0.83612 0.77552 1.21658 1.21735 1.20533 1.19282 0.91150 0.83921 1.43049 0.90962 1.42370 1.05781 0.99557 1.88111 1.20489 0.94988 0.86460 0.92371 0.92957 1.21829 0.98616 0.93967 1.02010 1.21851 1.01160 0.98416 0.95179 1.22133 0.96729 0.89712 0.94969 1.48224 1.18605 1.11391 1.55666 1.17157 0.80955 0.86534 0.78527 1.90864 1.57856 1.41748 1.49458 1.20614 0.92190 0.85489 1.15698 1.21216 0.94248 0.95275 1.03193 1.21073 0.95256 0.94282 1.09724 1.19132 0.89980 0.86517 1.09251 1.18095 0.93460 0.89354 1.00607 1.21112 0.94829 0.96672 1.01549 1.21052 0.99740 0.92536 0.99579 1.21249 0.93099 0.99561 1.00213 1.21109 0.96359 0.95931 0.99676 1.21132 0.99208 0.92059 0.99557 1.42774 1.09169 1.05253 1.56190 0.73813 1.22853 0.97764 0.81141 1.01333 0.93460 0.78074 0.92010 0.91195 0.91303 0.90904 0.90173 0.91297 0.83182 0.83676 0.86641 0.85712 0.85898 0.85570 0.85210 0.88795 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.72 -17.72 5.13 -53.31 -0.27 -17.99 16 10 C 0.17 3.32 2.92 -67.81 -0.20 3.12 16 11 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 12 C -0.13 -1.93 5.36 -26.69 -0.14 -2.08 16 13 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 14 C 0.09 0.99 5.30 -3.71 -0.02 0.97 16 15 N -0.61 -9.35 2.97 -174.34 -0.52 -9.87 16 16 C 0.58 9.75 7.62 -12.89 -0.10 9.65 16 17 O -0.52 -10.89 16.39 5.19 0.08 -10.81 16 18 C -0.03 -0.35 6.37 -81.94 -0.52 -0.87 16 19 C -0.11 -1.43 10.69 -39.23 -0.42 -1.85 16 20 C -0.18 -1.84 10.22 -39.31 -0.40 -2.25 16 21 C 0.07 0.67 6.93 -82.07 -0.57 0.10 16 22 C -0.01 -0.12 5.87 -104.98 -0.62 -0.74 16 23 C -0.12 -0.93 9.70 -39.18 -0.38 -1.31 16 24 C -0.11 -0.72 10.03 -39.64 -0.40 -1.12 16 25 C -0.12 -0.75 10.04 -39.49 -0.40 -1.14 16 26 C -0.11 -0.70 10.03 -39.64 -0.40 -1.10 16 27 C -0.10 -0.74 9.57 -39.18 -0.37 -1.11 16 28 N -0.53 -5.56 4.65 -5.81 -0.03 -5.59 16 29 H 0.42 3.52 5.46 -40.82 -0.22 3.30 16 30 C 0.09 1.75 6.03 -3.71 -0.02 1.73 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.39 9.97 7.80 -40.82 -0.32 9.65 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.77 4.22 -51.93 -0.22 0.55 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.15 1.12 7.26 -52.49 -0.38 0.74 16 41 H 0.12 0.70 7.14 -52.49 -0.37 0.33 16 42 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 45 H 0.13 0.75 6.98 -52.49 -0.37 0.39 16 46 H 0.09 2.08 7.00 -51.93 -0.36 1.72 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -33.55 382.39 -11.07 -44.62 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.44 Total: 10.40 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -5.36 Total: -6.99 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.09 Total: -60.70 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.55 -11.07 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001056448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.252 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds