Wall clock time and date at job start Sat Apr 11 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48494 * 109.47326 * 269.99969 * 3 2 1 5 5 H 1.48495 * 109.47054 * 30.00454 * 3 2 1 6 6 H 1.48507 * 109.47101 * 150.00059 * 3 2 1 7 7 C 1.38812 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00158 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.49742 * 325.00279 * 10 9 7 12 12 C 1.53037 * 109.52165 * 204.91763 * 10 9 7 13 13 C 1.53048 * 109.53697 * 178.66780 * 12 10 9 14 14 C 1.53195 * 109.30854 * 61.36502 * 13 12 10 15 15 N 1.46924 * 108.77757 * 305.36482 * 14 13 12 16 16 C 1.34781 * 120.63321 * 233.63394 * 15 14 13 17 17 O 1.21704 * 120.00005 * 173.18634 * 16 15 14 18 18 C 1.46584 * 119.99753 * 353.18371 * 16 15 14 19 19 C 1.38058 * 126.00459 * 155.78966 * 18 16 15 20 20 C 1.39365 * 107.43917 * 179.84475 * 19 18 16 21 21 C 1.37828 * 107.65506 * 0.42178 * 20 19 18 22 22 C 1.47801 * 125.82305 * 179.73885 * 21 20 19 23 23 C 1.39589 * 120.14523 * 179.72153 * 22 21 20 24 24 C 1.37963 * 119.85291 * 179.78970 * 23 22 21 25 25 C 1.38366 * 120.14163 * 0.48992 * 24 23 22 26 26 C 1.38356 * 120.29851 * 359.74226 * 25 24 23 27 27 C 1.37962 * 120.14824 * 0.02562 * 26 25 24 28 28 N 1.36406 * 108.35032 * 359.73724 * 21 20 19 29 29 H 0.96999 * 125.71781 * 179.97438 * 28 21 20 30 30 C 1.46921 * 118.73886 * 53.61211 * 15 14 13 31 31 H 0.96994 * 120.00224 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99998 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.46268 * 298.68703 * 12 10 9 34 34 H 1.08997 * 109.46436 * 58.65134 * 12 10 9 35 35 H 1.09000 * 109.49559 * 301.41716 * 13 12 10 36 36 H 1.08992 * 109.52655 * 181.33296 * 13 12 10 37 37 H 1.09000 * 109.58486 * 185.57784 * 14 13 12 38 38 H 1.08997 * 109.59117 * 65.15449 * 14 13 12 39 39 H 1.08002 * 126.27820 * 359.97337 * 19 18 16 40 40 H 1.07997 * 126.16789 * 180.16292 * 20 19 18 41 41 H 1.07997 * 120.07859 * 0.02621 * 23 22 21 42 42 H 1.07998 * 119.92875 * 180.25501 * 24 23 22 43 43 H 1.07997 * 119.84641 * 179.76647 * 25 24 23 44 44 H 1.07999 * 119.92684 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.07576 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.58841 * 186.60578 * 30 15 14 47 47 H 1.09004 * 109.58896 * 66.17474 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 1 2.9690 -3.5505 -0.5919 12 6 1.1810 -4.7532 -0.6114 13 6 1.9579 -6.0715 -0.6432 14 6 2.3200 -6.4807 0.7879 15 7 3.0393 -5.3717 1.4293 16 6 4.2433 -5.5732 2.0006 17 8 4.8847 -4.6269 2.4182 18 6 4.7801 -6.9321 2.1190 19 6 6.1141 -7.2712 2.2266 20 6 6.1858 -8.6598 2.3202 21 6 4.8990 -9.1499 2.2591 22 6 4.5126 -10.5753 2.3167 23 6 3.1668 -10.9401 2.2498 24 6 2.8132 -12.2727 2.2998 25 6 3.7884 -13.2461 2.4260 26 6 5.1238 -12.8911 2.4976 27 6 5.4914 -11.5624 2.4441 28 7 4.0430 -8.0949 2.1364 29 1 3.0770 -8.1540 2.0718 30 6 2.4214 -4.0388 1.4357 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 0.2819 -4.8761 -0.0076 34 1 0.9008 -4.4724 -1.6266 35 1 2.8697 -5.9424 -1.2264 36 1 1.3416 -6.8467 -1.0984 37 1 2.9571 -7.3648 0.7650 38 1 1.4100 -6.6980 1.3472 39 1 6.9487 -6.5859 2.2384 40 1 7.0873 -9.2463 2.4184 41 1 2.4044 -10.1811 2.1554 42 1 1.7727 -12.5565 2.2440 43 1 3.5060 -14.2876 2.4684 44 1 5.8801 -13.6558 2.5957 45 1 6.5340 -11.2867 2.5005 46 1 3.1255 -3.3116 1.8401 47 1 1.5196 -4.0569 2.0477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001056448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:12 Heat of formation + Delta-G solvation = 38.718119 kcal Electronic energy + Delta-G solvation = -28551.435614 eV Core-core repulsion = 24699.346786 eV Total energy + Delta-G solvation = -3852.088828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -42.64407 -40.78750 -39.56326 -38.69567 -36.33064 -34.09840 -32.97424 -32.87197 -32.55900 -31.56722 -30.29984 -29.05916 -26.66774 -25.96422 -24.18386 -23.64356 -23.41890 -22.40043 -21.72961 -21.16063 -20.58015 -19.23580 -18.84397 -17.96519 -17.20101 -16.93352 -16.62594 -16.37705 -15.92505 -15.68011 -15.54500 -15.34988 -15.30424 -15.09519 -14.81494 -14.59707 -14.24903 -14.14460 -14.02876 -13.82420 -13.58986 -13.54413 -13.43147 -13.11151 -12.91709 -12.58721 -12.24769 -12.18680 -12.08835 -11.98258 -11.87382 -11.75398 -11.41638 -11.27318 -11.08800 -10.43680 -10.07763 -9.88207 -9.85257 -9.06710 -8.65480 -8.01254 -5.30593 -0.20166 0.51366 0.71822 1.42953 1.44124 1.53330 1.72489 1.74419 1.94925 2.29499 2.51394 2.99975 3.31232 3.44623 3.59616 3.62228 3.90573 3.92285 3.94948 4.07144 4.08746 4.19683 4.25282 4.29069 4.31724 4.39331 4.42713 4.58483 4.62094 4.62818 4.75859 4.80365 4.87521 4.93585 5.04126 5.05505 5.12812 5.15520 5.29994 5.35445 5.38524 5.43647 5.50561 5.54921 5.64274 5.77725 5.82074 6.06468 6.21436 6.26025 6.34740 6.97960 7.28407 7.99339 8.25488 9.21121 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023582 B = 0.002282 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.064066 B =12267.197423 C =13171.909356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.064 0.936 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.029 0.971 12 C -0.117 4.117 13 C -0.119 4.119 14 C 0.084 3.916 15 N -0.603 5.603 16 C 0.577 3.423 17 O -0.580 6.580 18 C -0.056 4.056 19 C -0.119 4.119 20 C -0.188 4.188 21 C 0.090 3.910 22 C -0.041 4.041 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.105 4.105 28 N -0.522 5.522 29 H 0.428 0.572 30 C 0.108 3.892 31 H 0.253 0.747 32 H 0.379 0.621 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.171 0.829 41 H 0.127 0.873 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.141 0.859 46 H 0.050 0.950 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.457 -33.639 3.340 34.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.082 0.918 9 N -0.368 5.368 10 C 0.057 3.943 11 H 0.047 0.953 12 C -0.155 4.155 13 C -0.157 4.157 14 C -0.038 4.038 15 N -0.335 5.335 16 C 0.367 3.633 17 O -0.460 6.460 18 C -0.169 4.169 19 C -0.145 4.145 20 C -0.211 4.211 21 C -0.026 4.026 22 C -0.042 4.042 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.124 4.124 28 N -0.124 5.124 29 H 0.273 0.727 30 C -0.017 4.017 31 H 0.062 0.938 32 H 0.211 0.789 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.162 0.838 40 H 0.188 0.812 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.166 0.834 45 H 0.159 0.841 46 H 0.069 0.931 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.701 -32.931 3.528 33.790 hybrid contribution -0.390 1.854 0.063 1.896 sum 6.312 -31.076 3.591 31.913 Atomic orbital electron populations 1.69781 1.06235 1.26210 1.58976 1.25482 0.96431 1.00776 1.03311 0.85229 0.77615 0.79864 0.77608 1.21003 1.21619 1.20337 1.19499 0.91009 0.85481 1.41813 0.91823 1.42477 1.05525 1.00482 1.88301 1.20644 0.94654 0.86227 0.92790 0.95293 1.21728 0.98468 0.94054 1.01251 1.21841 1.00907 0.97356 0.95623 1.22487 0.97892 0.88723 0.94664 1.48205 1.18586 1.11044 1.55680 1.17622 0.80636 0.87440 0.77590 1.90820 1.59440 1.43818 1.51944 1.20024 0.92755 0.84674 1.19466 1.21384 0.93899 0.96571 1.02657 1.21343 0.96585 0.93221 1.09986 1.19484 0.89733 0.87140 1.06292 1.18163 0.94472 0.88405 1.03130 1.21353 0.94695 0.97664 1.01061 1.21354 1.00983 0.92215 0.99286 1.21635 0.93038 1.00734 0.98531 1.21427 0.97169 0.96000 0.99128 1.21387 0.99692 0.92409 0.98880 1.42629 1.09621 1.04313 1.55867 0.72682 1.22295 0.96763 0.82469 1.00177 0.93779 0.78870 0.90907 0.91754 0.92273 0.86641 0.88003 0.88357 0.83838 0.81173 0.85485 0.83854 0.83747 0.83420 0.84075 0.93095 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.98 13.06 21.65 0.28 -58.69 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 47.90 29.55 68.60 2.03 49.93 16 4 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 7 C -0.25 -14.25 9.93 84.03 0.83 -13.41 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.73 -37.24 5.13 -322.56 -1.65 -38.90 16 10 C 0.17 6.79 2.92 45.07 0.13 6.92 16 11 H 0.03 1.30 8.08 -2.39 -0.02 1.29 16 12 C -0.12 -3.47 5.36 30.62 0.16 -3.30 16 13 C -0.12 -2.50 6.08 30.68 0.19 -2.31 16 14 C 0.08 1.70 5.30 86.36 0.46 2.15 16 15 N -0.60 -18.84 2.97 -823.71 -2.45 -21.29 16 16 C 0.58 20.15 7.62 86.42 0.66 20.81 16 17 O -0.58 -25.96 16.39 -4.36 -0.07 -26.03 16 18 C -0.06 -1.51 6.37 40.36 0.26 -1.25 16 19 C -0.12 -2.99 10.69 22.50 0.24 -2.75 16 20 C -0.19 -3.57 10.22 22.44 0.23 -3.34 16 21 C 0.09 1.61 6.93 40.87 0.28 1.90 16 22 C -0.04 -0.58 5.87 -20.09 -0.12 -0.70 16 23 C -0.13 -1.54 9.70 22.53 0.22 -1.32 16 24 C -0.12 -1.14 10.03 22.23 0.22 -0.92 16 25 C -0.12 -1.01 10.04 22.33 0.22 -0.79 16 26 C -0.12 -1.06 10.03 22.23 0.22 -0.83 16 27 C -0.10 -1.21 9.57 22.53 0.22 -1.00 16 28 N -0.52 -9.95 4.65 -172.30 -0.80 -10.75 16 29 H 0.43 6.04 5.46 -92.71 -0.51 5.54 16 30 C 0.11 4.26 6.03 86.37 0.52 4.78 16 31 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.38 20.17 7.80 -92.71 -0.72 19.44 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.67 4.22 -2.39 -0.01 1.66 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.17 2.22 7.26 -2.91 -0.02 2.20 16 41 H 0.13 1.10 7.14 -2.91 -0.02 1.08 16 42 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.14 0.54 8.06 -2.91 -0.02 0.52 16 44 H 0.15 0.61 8.06 -2.91 -0.02 0.59 16 45 H 0.14 1.20 6.98 -2.91 -0.02 1.18 16 46 H 0.05 2.43 7.00 -2.39 -0.02 2.42 16 47 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -77.19 382.39 2.53 -74.66 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -0.22 Total: 29.91 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.42 Total: 1.16 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -4.62 Total: -129.63 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.07 Total: -26.03 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -77.19 2.53 -74.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001056448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.376 kcal (2) G-P(sol) polarization free energy of solvation -77.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds