Wall clock time and date at job start Sat Apr 11 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47058 * 272.94766 * 3 2 1 5 5 H 1.48497 * 109.47130 * 32.94436 * 3 2 1 6 6 H 1.48494 * 109.47169 * 152.94694 * 3 2 1 7 7 C 1.38808 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00025 * 339.33465 * 7 2 1 9 9 N 1.36939 * 120.00432 * 159.34299 * 7 2 1 10 10 C 1.46928 * 120.62487 * 332.62951 * 9 7 2 11 11 C 1.53198 * 108.77201 * 233.58415 * 10 9 7 12 12 C 1.53037 * 109.31258 * 305.36652 * 11 10 9 13 13 N 1.46494 * 109.46002 * 181.38707 * 12 11 10 14 14 C 1.34779 * 120.00348 * 155.27409 * 13 12 11 15 15 O 1.21732 * 119.99776 * 359.72341 * 14 13 12 16 16 C 1.46390 * 120.00278 * 179.72146 * 14 13 12 17 17 N 1.37637 * 126.32919 * 0.02936 * 16 14 13 18 18 H 0.96992 * 125.54872 * 359.95542 * 17 16 14 19 19 C 1.35642 * 108.89902 * 179.97438 * 17 16 14 20 20 C 1.35124 * 109.22264 * 359.97438 * 19 17 16 21 21 C 1.39106 * 126.32957 * 179.71246 * 16 14 13 22 22 C 1.48179 * 126.63064 * 0.03198 * 21 16 14 23 23 C 1.39449 * 120.13524 * 309.72978 * 22 21 16 24 24 C 1.37983 * 119.86731 * 179.78673 * 23 22 21 25 25 C 1.38336 * 120.13324 * 0.46569 * 24 23 22 26 26 C 1.38345 * 120.26768 * 359.78469 * 25 24 23 27 27 C 1.37993 * 120.13042 * 359.97438 * 26 25 24 28 28 C 1.53039 * 109.54210 * 61.36310 * 12 11 10 29 29 C 1.46923 * 120.63268 * 152.60122 * 9 7 2 30 30 H 0.96993 * 119.99762 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58922 * 113.79676 * 10 9 7 32 32 H 1.09001 * 109.70671 * 353.43876 * 10 9 7 33 33 H 1.08998 * 109.49947 * 185.41328 * 11 10 9 34 34 H 1.09002 * 109.49742 * 65.31768 * 11 10 9 35 35 H 1.09003 * 109.45868 * 301.35933 * 12 11 10 36 36 H 0.97005 * 120.00393 * 334.99542 * 13 12 11 37 37 H 1.08000 * 125.38896 * 179.97438 * 19 17 16 38 38 H 1.08005 * 126.09739 * 179.97438 * 20 19 17 39 39 H 1.08005 * 120.06522 * 359.97438 * 23 22 21 40 40 H 1.08002 * 119.93546 * 180.24913 * 24 23 22 41 41 H 1.07998 * 119.87384 * 179.76181 * 25 24 23 42 42 H 1.07996 * 119.93858 * 180.02562 * 26 25 24 43 43 H 1.07993 * 120.07170 * 180.02562 * 27 26 25 44 44 H 1.09003 * 109.49248 * 58.58699 * 28 12 11 45 45 H 1.08995 * 109.49804 * 178.68119 * 28 12 11 46 46 H 1.08999 * 109.58645 * 246.19904 * 29 9 7 47 47 H 1.08995 * 109.58703 * 6.48523 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0824 -1.3983 5 1 1.4802 2.6339 0.7614 6 1 3.5775 1.4230 0.6367 7 6 2.0103 -1.2021 -0.0005 8 1 1.5224 -2.1075 0.3291 9 7 3.3137 -1.2401 -0.4189 10 6 3.8173 -0.2584 -1.3891 11 6 4.4621 -1.0078 -2.5593 12 6 5.5289 -1.9643 -2.0215 13 7 6.1707 -2.6585 -3.1405 14 6 7.4190 -3.1478 -3.0033 15 8 8.0152 -3.0083 -1.9511 16 6 8.0581 -3.8469 -4.1195 17 7 7.5077 -4.0768 -5.3599 18 1 6.6224 -3.8007 -5.6441 19 6 8.4049 -4.7528 -6.1202 20 6 9.5276 -4.9664 -5.3991 21 6 9.3360 -4.3963 -4.1246 22 6 10.3071 -4.3865 -3.0054 23 6 10.6037 -3.1939 -2.3463 24 6 11.5054 -3.1919 -1.3019 25 6 12.1221 -4.3680 -0.9145 26 6 11.8358 -5.5534 -1.5679 27 6 10.9320 -5.5689 -2.6105 28 6 4.8753 -2.9899 -1.0925 29 6 4.2351 -2.2630 0.0943 30 1 -0.4849 0.8400 0.0004 31 1 4.5597 0.3804 -0.9107 32 1 2.9922 0.3520 -1.7563 33 1 4.9246 -0.2922 -3.2391 34 1 3.6995 -1.5758 -3.0921 35 1 6.2779 -1.3984 -1.4676 36 1 5.6957 -2.7698 -3.9790 37 1 8.2470 -5.0701 -7.1404 38 1 10.4146 -5.4798 -5.7398 39 1 10.1263 -2.2742 -2.6508 40 1 11.7330 -2.2696 -0.7881 41 1 12.8301 -4.3610 -0.0991 42 1 12.3200 -6.4686 -1.2608 43 1 10.7090 -6.4949 -3.1196 44 1 4.1088 -3.5393 -1.6391 45 1 5.6318 -3.6850 -0.7284 46 1 5.0116 -1.7877 0.6936 47 1 3.6846 -2.9757 0.7083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003954673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:17 Heat of formation + Delta-G solvation = 37.940089 kcal Electronic energy + Delta-G solvation = -28966.842866 eV Core-core repulsion = 25114.720300 eV Total energy + Delta-G solvation = -3852.122566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -42.33099 -40.57254 -39.60620 -39.00363 -36.13174 -34.19144 -33.44411 -32.14629 -32.01274 -31.72103 -30.67736 -29.47229 -26.88875 -24.81930 -24.30736 -23.58219 -23.34883 -22.65196 -21.44910 -21.28102 -20.27460 -19.84713 -18.75453 -17.65139 -17.42372 -16.85617 -16.58596 -16.30350 -15.98284 -15.84203 -15.59730 -15.39168 -15.11057 -14.96713 -14.67491 -14.47943 -14.38557 -14.20841 -14.11169 -13.98820 -13.68968 -13.63301 -13.49182 -13.12661 -12.63082 -12.60160 -12.31752 -12.07393 -11.98904 -11.88868 -11.82638 -11.60583 -11.41268 -11.16636 -10.72763 -10.27346 -10.14406 -9.69944 -9.39983 -9.00521 -8.93119 -8.18513 -5.51225 0.09417 0.62608 0.78076 1.27178 1.41408 1.49898 1.83459 2.01558 2.22750 2.33969 2.39272 3.03073 3.03236 3.28749 3.68923 3.87272 3.92622 3.98835 4.12724 4.17042 4.19150 4.26878 4.33344 4.34656 4.43400 4.44861 4.57897 4.64760 4.69006 4.78932 4.80644 4.83781 4.88474 4.97209 5.02495 5.10947 5.16633 5.22586 5.27167 5.35121 5.42483 5.57202 5.68821 5.71719 5.80272 5.84106 5.91843 6.10472 6.20289 6.46854 6.61525 6.87792 7.17528 7.58403 7.98885 9.01303 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016750 B = 0.002713 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.201848 B =10319.204544 C =11225.019670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.032 4.032 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.311 1.311 6 H -0.266 1.266 7 C -0.250 4.250 8 H 0.053 0.947 9 N -0.618 5.618 10 C 0.121 3.879 11 C -0.127 4.127 12 C 0.164 3.836 13 N -0.712 5.712 14 C 0.580 3.420 15 O -0.555 6.555 16 C -0.068 4.068 17 N -0.525 5.525 18 H 0.432 0.568 19 C 0.053 3.947 20 C -0.215 4.215 21 C -0.062 4.062 22 C -0.035 4.035 23 C -0.085 4.085 24 C -0.140 4.140 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.115 4.115 28 C -0.127 4.127 29 C 0.148 3.852 30 H 0.262 0.738 31 H 0.031 0.969 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.406 0.594 37 H 0.218 0.782 38 H 0.160 0.840 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.135 0.865 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.028 0.972 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.606 -10.982 -15.898 30.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.227 4.227 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.240 1.240 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.166 4.166 12 C 0.060 3.940 13 N -0.363 5.363 14 C 0.369 3.631 15 O -0.433 6.433 16 C -0.181 4.181 17 N -0.122 5.122 18 H 0.273 0.727 19 C -0.083 4.083 20 C -0.239 4.239 21 C -0.071 4.071 22 C -0.036 4.036 23 C -0.104 4.104 24 C -0.158 4.158 25 C -0.145 4.145 26 C -0.149 4.149 27 C -0.133 4.133 28 C -0.167 4.167 29 C 0.022 3.978 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.242 0.758 37 H 0.234 0.766 38 H 0.177 0.823 39 H 0.118 0.882 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.704 -10.718 -15.147 30.103 hybrid contribution -0.996 1.128 0.087 1.507 sum 22.708 -9.590 -15.060 28.887 Atomic orbital electron populations 1.69958 1.07348 1.27281 1.55533 1.25877 0.95815 1.00794 1.00205 0.85959 0.78558 0.80318 0.77898 1.19381 1.24012 1.19090 1.18861 0.86553 0.93652 1.38878 0.92941 1.44503 1.07763 1.34454 1.47585 1.21367 0.96913 0.92023 0.90093 1.22159 0.97469 0.98725 0.98257 1.20655 0.93700 0.92538 0.87128 1.45882 1.15282 1.58256 1.16911 1.17312 0.81110 0.78130 0.86578 1.90875 1.64404 1.59071 1.28931 1.20195 0.96516 1.13449 0.87961 1.41975 1.16606 1.44000 1.09630 0.72742 1.22615 0.88882 0.97934 0.98917 1.21180 1.01170 1.08663 0.92844 1.18846 0.91780 1.01326 0.95178 1.18357 0.96104 0.93749 0.95352 1.21094 0.96147 0.97343 0.95793 1.21261 0.97740 0.99342 0.97437 1.21459 1.00193 0.92514 1.00315 1.21350 0.98474 0.98897 0.96167 1.21377 0.96842 0.97241 0.97837 1.22185 0.99136 0.97945 0.97421 1.20989 0.91781 0.90707 0.94303 0.92854 0.95100 0.92226 0.89193 0.90745 0.91164 0.75786 0.76565 0.82258 0.88196 0.85561 0.84139 0.83621 0.84712 0.91909 0.91990 0.95375 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.57 13.97 21.65 0.30 -59.27 16 2 C -0.03 -1.86 5.23 84.86 0.44 -1.41 16 3 Si 0.94 46.14 24.35 68.60 1.67 47.81 16 4 H -0.27 -12.04 6.62 99.48 0.66 -11.38 16 5 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 6 H -0.27 -12.71 6.63 99.48 0.66 -12.05 16 7 C -0.25 -14.14 10.03 84.03 0.84 -13.30 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 N -0.62 -29.00 2.77 -699.10 -1.94 -30.94 16 10 C 0.12 4.97 4.20 86.36 0.36 5.33 16 11 C -0.13 -3.86 5.55 30.67 0.17 -3.69 16 12 C 0.16 4.94 2.41 45.02 0.11 5.05 16 13 N -0.71 -16.86 5.07 -446.65 -2.27 -19.12 16 14 C 0.58 15.99 7.72 86.36 0.67 16.66 16 15 O -0.55 -19.54 13.10 -4.45 -0.06 -19.60 16 16 C -0.07 -1.50 7.07 40.56 0.29 -1.22 16 17 N -0.53 -6.66 5.98 -183.13 -1.10 -7.76 16 18 H 0.43 2.80 8.18 -92.71 -0.76 2.04 16 19 C 0.05 0.52 11.86 83.39 0.99 1.51 16 20 C -0.22 -3.36 10.73 22.21 0.24 -3.12 16 21 C -0.06 -1.43 5.67 -19.77 -0.11 -1.54 16 22 C -0.04 -0.91 5.27 -20.05 -0.11 -1.01 16 23 C -0.09 -2.39 7.63 22.50 0.17 -2.22 16 24 C -0.14 -3.45 10.03 22.23 0.22 -3.22 16 25 C -0.13 -2.64 10.04 22.32 0.22 -2.41 16 26 C -0.13 -2.57 10.03 22.24 0.22 -2.35 16 27 C -0.11 -2.52 9.74 22.50 0.22 -2.30 16 28 C -0.13 -4.25 5.65 30.67 0.17 -4.08 16 29 C 0.15 5.96 6.52 86.36 0.56 6.52 16 30 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.03 1.26 7.07 -2.39 -0.02 1.24 16 32 H 0.06 2.65 4.50 -2.39 -0.01 2.64 16 33 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.39 7.58 -2.39 -0.02 2.38 16 36 H 0.41 6.75 7.73 -92.70 -0.72 6.03 16 37 H 0.22 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.10 3.04 7.36 -2.91 -0.02 3.02 16 40 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 Total: -1.00 -77.18 376.76 1.74 -75.45 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.57 Total: 20.23 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 5.69 Total: -6.80 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -5.00 Total: -117.09 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.06 Total: -19.60 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -77.18 1.74 -75.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003954673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.387 kcal (2) G-P(sol) polarization free energy of solvation -77.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds