Wall clock time and date at job start Sat Apr 11 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39049 * 121.01741 * 2 1 4 4 C 1.47758 * 120.26883 * 0.02642 * 3 2 1 5 5 O 1.21567 * 119.99443 * 355.00009 * 4 3 2 6 6 N 1.34770 * 120.00236 * 174.99972 * 4 3 2 7 7 C 1.46499 * 120.00182 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.52632 * 34.91801 * 7 6 4 9 9 C 1.53042 * 109.49443 * 155.00013 * 7 6 4 10 10 C 1.53040 * 109.53357 * 181.31655 * 9 7 6 11 11 C 1.53197 * 109.31541 * 298.63450 * 10 9 7 12 12 N 1.46930 * 108.77314 * 54.63304 * 11 10 9 13 13 C 1.36935 * 120.62799 * 126.37219 * 12 11 10 14 14 H 1.07994 * 120.00014 * 205.28575 * 13 12 11 15 15 C 1.38820 * 119.99870 * 25.28171 * 13 12 11 16 16 N 1.31611 * 119.99960 * 31.96569 * 15 13 12 17 17 Si 1.86800 * 119.99660 * 211.96359 * 15 13 12 18 18 H 1.48504 * 109.46822 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.46932 * 60.00205 * 17 15 13 20 20 H 1.48496 * 109.47166 * 299.99735 * 17 15 13 21 21 C 1.46927 * 118.73847 * 306.64582 * 12 11 10 22 22 C 1.40562 * 119.46111 * 180.29947 * 3 2 1 23 23 N 1.30819 * 121.53881 * 359.43978 * 22 3 2 24 24 C 1.33789 * 121.71982 * 0.54724 * 23 22 3 25 25 C 1.40529 * 120.81700 * 179.75109 * 24 23 22 26 26 C 1.36125 * 119.81638 * 180.02562 * 25 24 23 27 27 C 1.39342 * 121.09239 * 359.94621 * 26 25 24 28 28 C 1.36146 * 120.83983 * 0.02562 * 27 26 25 29 29 C 1.40490 * 121.01496 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47634 * 84.51525 * 1 2 3 31 31 H 1.09002 * 109.47188 * 204.52124 * 1 2 3 32 32 H 1.09006 * 109.46904 * 324.51575 * 1 2 3 33 33 H 0.97008 * 119.99499 * 359.97438 * 6 4 3 34 34 H 1.08993 * 109.45949 * 61.29908 * 9 7 6 35 35 H 1.08993 * 109.45022 * 301.32572 * 9 7 6 36 36 H 1.09002 * 109.49961 * 178.68054 * 10 9 7 37 37 H 1.09001 * 109.50179 * 58.58711 * 10 9 7 38 38 H 1.09000 * 109.58019 * 294.85320 * 11 10 9 39 39 H 1.08992 * 109.70787 * 174.49632 * 11 10 9 40 40 H 0.97001 * 120.00473 * 5.70626 * 16 15 13 41 41 H 1.08999 * 109.58408 * 173.14508 * 21 12 11 42 42 H 1.08994 * 109.58551 * 293.57117 * 21 12 11 43 43 H 1.07998 * 119.22313 * 179.70297 * 22 3 2 44 44 H 1.07996 * 120.09097 * 0.02562 * 25 24 23 45 45 H 1.07998 * 119.45567 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.58219 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.19224 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2236 1.1917 0.0000 4 6 1.5137 2.4876 0.0006 5 8 0.3018 2.5167 -0.0907 6 7 2.2097 3.6372 0.1023 7 6 1.5058 4.9220 0.1035 8 1 0.5503 4.8134 0.6165 9 6 2.3567 5.9698 0.8246 10 6 1.6079 7.3042 0.8551 11 6 1.3658 7.7823 -0.5800 12 7 0.6746 6.7193 -1.3223 13 6 -0.4957 6.9784 -1.9845 14 1 -1.1984 6.1800 -2.1716 15 6 -0.7788 8.2674 -2.4152 16 7 0.1994 9.0695 -2.7786 17 14 -2.5480 8.8633 -2.4789 18 1 -2.5810 10.2643 -2.9703 19 1 -3.1404 8.8013 -1.1186 20 1 -3.3290 7.9980 -3.3989 21 6 1.2597 5.3716 -1.3356 22 6 3.6287 1.1535 -0.0064 23 7 4.2824 0.0204 -0.0015 24 6 3.6483 -1.1576 -0.0010 25 6 4.3697 -2.3636 -0.0009 26 6 3.7036 -3.5508 -0.0009 27 6 2.3108 -3.5944 0.0001 28 6 1.5766 -2.4479 0.0006 29 6 2.2309 -1.2040 -0.0005 30 1 -0.3634 0.0982 -1.0229 31 1 -0.3634 -0.9350 0.4265 32 1 -0.3633 0.8369 0.5966 33 1 3.1767 3.6138 0.1755 34 1 3.3019 6.0958 0.2968 35 1 2.5516 5.6395 1.8448 36 1 2.2043 8.0439 1.3893 37 1 0.6514 7.1733 1.3611 38 1 2.3207 8.0005 -1.0584 39 1 0.7490 8.6808 -0.5690 40 1 1.1088 8.7353 -2.8249 41 1 0.5717 4.6793 -1.8207 42 1 2.2057 5.3893 -1.8767 43 1 4.1813 2.0814 -0.0113 44 1 5.4495 -2.3486 -0.0008 45 1 4.2638 -4.4741 -0.0013 46 1 1.8074 -4.5499 0.0004 47 1 0.4976 -2.4940 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007977486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:37 Heat of formation + Delta-G solvation = 16.626417 kcal Electronic energy + Delta-G solvation = -28861.212325 eV Core-core repulsion = 25008.165529 eV Total energy + Delta-G solvation = -3853.046796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.23447 -40.86661 -39.22835 -37.91587 -36.36923 -35.46755 -34.35729 -32.34185 -32.08417 -31.33067 -30.26692 -28.83426 -27.06944 -25.58321 -24.96209 -24.03069 -23.59114 -22.22971 -21.78396 -21.14060 -19.46034 -19.30178 -18.85853 -18.07489 -17.06590 -16.73375 -16.53190 -16.16061 -16.04577 -15.53414 -15.47433 -15.46081 -15.37701 -14.98326 -14.87941 -14.71188 -14.35065 -14.11423 -13.95517 -13.84094 -13.63978 -13.21829 -13.02330 -12.79956 -12.75886 -12.62259 -12.45914 -12.36653 -11.94789 -11.88612 -11.86225 -11.70970 -11.31232 -11.25973 -11.04939 -10.61806 -10.46472 -10.17139 -9.87444 -9.27161 -8.97343 -8.34892 -5.38164 -0.85354 -0.45781 0.79403 1.47514 1.55848 1.62061 1.82713 1.96305 2.17458 2.63183 3.00588 3.10173 3.12934 3.42223 3.47792 3.53185 3.62069 3.74713 3.76894 3.91905 4.01463 4.11811 4.17436 4.28657 4.32707 4.38185 4.40081 4.43368 4.54790 4.63360 4.68338 4.72214 4.89541 4.89852 4.93129 5.00243 5.01265 5.03427 5.14392 5.18080 5.24601 5.33900 5.39237 5.40647 5.47638 5.51443 5.81404 5.82502 6.33784 6.44739 6.72368 7.00213 7.13555 7.74633 8.16153 8.91517 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.002435 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.351418 B =11498.222851 C =12276.581982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.042 3.958 3 C -0.219 4.219 4 C 0.561 3.439 5 O -0.563 6.563 6 N -0.703 5.703 7 C 0.145 3.855 8 H 0.061 0.939 9 C -0.106 4.106 10 C -0.124 4.124 11 C 0.150 3.850 12 N -0.613 5.613 13 C -0.366 4.366 14 H 0.037 0.963 15 C -0.065 4.065 16 N -0.925 5.925 17 Si 1.106 2.894 18 H -0.286 1.286 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.147 3.853 22 C 0.165 3.835 23 N -0.497 5.497 24 C 0.121 3.879 25 C -0.118 4.118 26 C -0.077 4.077 27 C -0.115 4.115 28 C -0.096 4.096 29 C -0.130 4.130 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.413 0.587 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.045 0.955 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.020 0.980 43 H 0.185 0.815 44 H 0.147 0.853 45 H 0.166 0.834 46 H 0.164 0.836 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.546 -25.516 10.389 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.034 3.966 3 C -0.224 4.224 4 C 0.349 3.651 5 O -0.444 6.444 6 N -0.355 5.355 7 C 0.039 3.961 8 H 0.079 0.921 9 C -0.144 4.144 10 C -0.164 4.164 11 C 0.025 3.975 12 N -0.338 5.338 13 C -0.495 4.495 14 H 0.055 0.945 15 C -0.263 4.263 16 N -0.566 5.566 17 Si 0.930 3.070 18 H -0.211 1.211 19 H -0.207 1.207 20 H -0.206 1.206 21 C 0.020 3.980 22 C -0.008 4.008 23 N -0.206 5.206 24 C 0.001 3.999 25 C -0.137 4.137 26 C -0.097 4.097 27 C -0.132 4.132 28 C -0.115 4.115 29 C -0.132 4.132 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.251 0.749 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.201 0.799 44 H 0.164 0.836 45 H 0.184 0.816 46 H 0.181 0.819 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.658 -24.288 10.004 27.658 hybrid contribution 0.416 -0.807 -0.215 0.933 sum 9.074 -25.096 9.788 28.424 Atomic orbital electron populations 1.21160 0.88446 1.04537 1.03923 1.20918 0.97737 0.91005 0.86980 1.20713 0.95796 0.93322 1.12605 1.18296 0.86715 0.84212 0.75911 1.90749 1.15139 1.87509 1.50977 1.45788 1.11115 1.04716 1.73875 1.21163 0.96025 0.82220 0.96731 0.92066 1.21636 0.98239 0.93362 1.01147 1.21919 1.00269 0.97384 0.96792 1.20942 0.94295 0.91354 0.90930 1.44269 1.26085 1.05823 1.57585 1.20049 0.95814 0.97293 1.36343 0.94513 1.27031 1.08409 0.94935 0.95926 1.70910 1.01716 1.40377 1.43560 0.82995 0.71357 0.75613 0.77030 1.21138 1.20672 1.20631 1.21102 0.95446 0.86420 0.94987 1.23287 0.89597 0.97418 0.90545 1.67980 1.39805 0.97950 1.14824 1.19451 0.90213 0.93302 0.96952 1.21072 1.01231 0.89973 1.01383 1.21453 0.94887 0.98599 0.94727 1.21410 0.94237 0.99431 0.98146 1.21416 1.01558 0.90527 0.97980 1.18920 0.94062 0.94661 1.05516 0.90112 0.88701 0.89753 0.74892 0.90254 0.89020 0.89137 0.93109 0.96900 0.93657 0.93669 0.95479 0.96201 0.79875 0.83554 0.81619 0.81850 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.53 71.24 0.61 -2.29 16 2 C 0.04 1.04 5.99 -19.12 -0.11 0.93 16 3 C -0.22 -5.73 5.89 -20.00 -0.12 -5.85 16 4 C 0.56 17.47 7.69 86.76 0.67 18.13 16 5 O -0.56 -21.90 13.06 -3.93 -0.05 -21.95 16 6 N -0.70 -19.40 5.03 -445.82 -2.24 -21.64 16 7 C 0.14 5.05 2.59 44.93 0.12 5.16 16 8 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 9 C -0.11 -3.01 5.36 30.62 0.16 -2.85 16 10 C -0.12 -4.30 6.08 30.67 0.19 -4.11 16 11 C 0.15 6.97 4.87 86.36 0.42 7.39 16 12 N -0.61 -31.94 2.87 -699.93 -2.01 -33.96 16 13 C -0.37 -21.68 9.43 84.04 0.79 -20.89 16 14 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 15 C -0.07 -3.82 4.49 84.87 0.38 -3.44 16 16 N -0.93 -56.90 12.45 21.65 0.27 -56.63 16 17 Si 1.11 52.65 30.02 68.60 2.06 54.71 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 C 0.15 6.58 6.06 86.22 0.52 7.10 16 22 C 0.17 3.72 10.67 85.41 0.91 4.63 16 23 N -0.50 -11.92 10.30 -187.69 -1.93 -13.86 16 24 C 0.12 2.70 6.61 40.29 0.27 2.97 16 25 C -0.12 -1.90 9.97 22.34 0.22 -1.67 16 26 C -0.08 -0.80 9.94 22.04 0.22 -0.58 16 27 C -0.11 -1.16 9.96 22.05 0.22 -0.94 16 28 C -0.10 -1.44 9.32 22.35 0.21 -1.23 16 29 C -0.13 -2.80 5.74 -21.28 -0.12 -2.92 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.53 6.25 -2.39 -0.01 1.52 16 32 H 0.08 2.41 5.83 -2.38 -0.01 2.40 16 33 H 0.41 8.14 6.66 -92.70 -0.62 7.52 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.01 0.61 8.04 -2.39 -0.02 0.59 16 39 H 0.04 2.40 6.33 -2.39 -0.02 2.38 16 40 H 0.25 15.91 7.29 -92.71 -0.68 15.23 16 41 H 0.03 1.35 7.92 -2.39 -0.02 1.33 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.18 2.91 6.41 -2.91 -0.02 2.90 16 44 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 46 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 47 H 0.15 1.64 6.32 -2.91 -0.02 1.62 16 Total: -1.00 -78.20 373.87 2.12 -76.08 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.48 Total: 17.71 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.55 Total: -0.46 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.92 Total: -126.08 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.06 Total: 54.71 kcal Total: -78.20 2.12 -76.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007977486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.703 kcal (2) G-P(sol) polarization free energy of solvation -78.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds