Wall clock time and date at job start Sat Apr 11 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47584 * 240.00425 * 3 2 1 5 5 H 1.48497 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47222 * 120.00324 * 3 2 1 7 7 C 1.38817 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99816 * 197.35605 * 7 2 1 9 9 N 1.36936 * 119.99703 * 17.34735 * 7 2 1 10 10 C 1.46931 * 120.62728 * 207.68603 * 9 7 2 11 11 C 1.53194 * 108.77251 * 233.60968 * 10 9 7 12 12 C 1.53037 * 109.31396 * 305.36770 * 11 10 9 13 13 C 1.53044 * 109.54018 * 61.36586 * 12 11 10 14 14 H 1.08998 * 109.49260 * 58.58911 * 13 12 11 15 15 N 1.46498 * 109.49536 * 178.68207 * 13 12 11 16 16 C 1.34781 * 119.99463 * 204.99777 * 15 13 12 17 17 O 1.21638 * 120.00311 * 0.02562 * 16 15 13 18 18 C 1.47138 * 119.99608 * 180.02562 * 16 15 13 19 19 C 1.36617 * 126.97494 * 0.02562 * 18 16 15 20 20 N 1.34706 * 108.68351 * 179.97438 * 19 18 16 21 21 H 0.96994 * 124.72695 * 179.97438 * 20 19 18 22 22 C 1.36219 * 110.54583 * 0.02562 * 20 19 18 23 23 C 1.35751 * 108.68107 * 359.73064 * 22 20 19 24 24 C 1.48276 * 126.98183 * 180.27517 * 23 22 20 25 25 C 1.39401 * 120.12197 * 129.87326 * 24 23 22 26 26 C 1.38000 * 119.86923 * 179.74296 * 25 24 23 27 27 C 1.38331 * 120.12661 * 0.53238 * 26 25 24 28 28 C 1.38334 * 120.25644 * 359.72076 * 27 26 25 29 29 C 1.37997 * 120.12441 * 0.02562 * 28 27 26 30 30 C 1.46922 * 120.63147 * 27.68907 * 9 7 2 31 31 H 0.97003 * 119.99445 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.58289 * 113.82892 * 10 9 7 33 33 H 1.08998 * 109.58649 * 353.39726 * 10 9 7 34 34 H 1.08998 * 109.49883 * 185.41683 * 11 10 9 35 35 H 1.09003 * 109.49573 * 65.31831 * 11 10 9 36 36 H 1.08998 * 109.46350 * 301.34075 * 12 11 10 37 37 H 1.09007 * 109.45060 * 181.38102 * 12 11 10 38 38 H 0.96996 * 120.00158 * 25.00297 * 15 13 12 39 39 H 1.07995 * 125.65928 * 359.96663 * 19 18 16 40 40 H 1.08004 * 125.65845 * 180.02562 * 22 20 19 41 41 H 1.08002 * 120.06133 * 359.97438 * 25 24 23 42 42 H 1.08003 * 119.93842 * 180.25414 * 26 25 24 43 43 H 1.08006 * 119.87512 * 179.69802 * 27 26 25 44 44 H 1.08004 * 119.93541 * 179.97438 * 28 27 26 45 45 H 1.08004 * 120.06749 * 179.97438 * 29 28 27 46 46 H 1.09003 * 109.58756 * 6.60017 * 30 9 7 47 47 H 1.09005 * 109.58902 * 246.17755 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0534 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3547 10 6 1.8193 -3.6548 0.1791 11 6 2.0745 -4.6094 -0.9916 12 6 0.8188 -4.6888 -1.8628 13 6 0.5008 -3.3034 -2.4299 14 1 1.3494 -2.9454 -3.0128 15 7 -0.6830 -3.3866 -3.2889 16 6 -0.8692 -2.4806 -4.2692 17 8 -0.0542 -1.5940 -4.4409 18 6 -2.0584 -2.5638 -5.1317 19 6 -3.0579 -3.4929 -5.0657 20 7 -3.9620 -3.2231 -6.0271 21 1 -4.7674 -3.7389 -6.1887 22 6 -3.5870 -2.1256 -6.7416 23 6 -2.4159 -1.6585 -6.2384 24 6 -1.6506 -0.4786 -6.7083 25 6 -1.2233 0.4862 -5.7974 26 6 -0.5068 1.5795 -6.2398 27 6 -0.2220 1.7246 -7.5857 28 6 -0.6481 0.7731 -8.4949 29 6 -1.3608 -0.3270 -8.0633 30 6 0.2278 -2.3340 -1.2755 31 1 -0.4849 0.8401 0.0004 32 1 1.0469 -4.0693 0.8269 33 1 2.7400 -3.5177 0.7462 34 1 2.3137 -5.6009 -0.6071 35 1 2.9083 -4.2390 -1.5880 36 1 -0.0203 -5.0358 -1.2599 37 1 0.9896 -5.3864 -2.6829 38 1 -1.3327 -4.0937 -3.1522 39 1 -3.1138 -4.3085 -4.3600 40 1 -4.1334 -1.6954 -7.5679 41 1 -1.4493 0.3763 -4.7471 42 1 -0.1716 2.3256 -5.5345 43 1 0.3348 2.5844 -7.9281 44 1 -0.4232 0.8918 -9.5446 45 1 -1.6934 -1.0691 -8.7740 46 1 0.0984 -1.3254 -1.6682 47 1 -0.6744 -2.6408 -0.7463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009511817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:18 Heat of formation + Delta-G solvation = 31.523544 kcal Electronic energy + Delta-G solvation = -29503.722497 eV Core-core repulsion = 25651.321689 eV Total energy + Delta-G solvation = -3852.400808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.11761 -40.38411 -39.62510 -38.69967 -35.71763 -34.41362 -33.39133 -32.05339 -31.76304 -31.47847 -29.85352 -29.13997 -27.24071 -24.68960 -23.90242 -23.77296 -23.37855 -22.68220 -21.15638 -20.71481 -20.10044 -19.43203 -18.73490 -17.41569 -17.24212 -17.06514 -16.50429 -16.00266 -15.93194 -15.74726 -15.56541 -15.26590 -14.93100 -14.85754 -14.55366 -14.36682 -14.21444 -14.15302 -14.00105 -13.88756 -13.71305 -13.43229 -12.96858 -12.93660 -12.68120 -12.48496 -12.25863 -12.08433 -12.02126 -11.90246 -11.68713 -11.56720 -11.24968 -10.78744 -10.56131 -10.17448 -10.00055 -9.73451 -9.41576 -8.90144 -8.69183 -7.90286 -5.35588 0.32077 0.59612 0.89688 1.36539 1.43652 1.47623 1.54791 2.28324 2.44117 2.52127 2.68850 3.01122 3.26272 3.76038 3.90759 3.99489 4.04862 4.13539 4.16107 4.17780 4.22618 4.30801 4.33390 4.46622 4.51465 4.63683 4.67254 4.73564 4.77439 4.82972 4.93175 5.03378 5.08795 5.20713 5.20772 5.22312 5.26702 5.36509 5.49445 5.53281 5.57010 5.61557 5.66662 5.68240 5.83089 5.86561 5.94857 6.20016 6.35535 6.70217 6.86261 7.11098 7.56867 7.85310 8.33583 9.13823 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009579 B = 0.004209 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.392695 B = 6651.402195 C = 8656.615413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.048 4.048 3 Si 0.957 3.043 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.611 5.611 10 C 0.136 3.864 11 C -0.122 4.122 12 C -0.105 4.105 13 C 0.135 3.865 14 H 0.042 0.958 15 N -0.708 5.708 16 C 0.569 3.431 17 O -0.585 6.585 18 C -0.254 4.254 19 C 0.073 3.927 20 N -0.524 5.524 21 H 0.443 0.557 22 C 0.020 3.980 23 C -0.126 4.126 24 C -0.019 4.019 25 C -0.096 4.096 26 C -0.146 4.146 27 C -0.129 4.129 28 C -0.125 4.125 29 C -0.115 4.115 30 C 0.182 3.818 31 H 0.246 0.754 32 H 0.023 0.977 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.409 0.591 39 H 0.211 0.789 40 H 0.207 0.793 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.141 0.859 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.039 0.961 47 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.995 -11.750 -17.571 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.243 4.243 3 Si 0.785 3.215 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.335 5.335 10 C 0.011 3.989 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.029 3.971 14 H 0.061 0.939 15 N -0.360 5.360 16 C 0.359 3.641 17 O -0.465 6.465 18 C -0.264 4.264 19 C -0.065 4.065 20 N -0.119 5.119 21 H 0.284 0.716 22 C -0.110 4.110 23 C -0.132 4.132 24 C -0.019 4.019 25 C -0.114 4.114 26 C -0.164 4.164 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.133 4.133 30 C 0.055 3.945 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.246 0.754 39 H 0.227 0.773 40 H 0.224 0.776 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.159 0.841 44 H 0.173 0.827 45 H 0.166 0.834 46 H 0.058 0.942 47 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -10.648 -11.080 -17.685 23.429 hybrid contribution 0.081 1.114 0.830 1.391 sum -10.568 -9.967 -16.856 22.251 Atomic orbital electron populations 1.70166 1.06653 1.25520 1.55090 1.25738 0.95986 1.01424 1.01189 0.85485 0.77869 0.79764 0.78333 1.21432 1.21987 1.18874 1.19467 0.93024 0.86396 1.40822 0.91505 1.44257 1.36038 1.02672 1.50485 1.21183 0.97525 0.85565 0.94645 1.21908 0.97024 1.00150 0.97056 1.21631 0.99050 0.93855 0.99734 1.21396 0.87082 0.97823 0.90826 0.93941 1.45668 1.25846 1.31622 1.32873 1.18049 0.85393 0.80798 0.79859 1.90802 1.47415 1.36098 1.72212 1.20439 0.98927 1.03511 1.03573 1.22241 0.89074 1.00241 0.94895 1.41383 1.21336 1.23909 1.25306 0.71577 1.22138 0.96726 0.91248 1.00865 1.19346 0.97812 0.97080 0.98982 1.18271 0.97924 0.92345 0.93400 1.21027 0.97914 0.94481 0.97994 1.21203 0.99695 0.98315 0.97184 1.21399 1.00450 1.00541 0.92331 1.21389 0.98188 0.93937 1.00713 1.21446 0.99171 0.98741 0.93923 1.20760 0.87863 0.97516 0.88354 0.94526 0.95863 0.92736 0.88274 0.93381 0.90451 0.89678 0.75425 0.77258 0.77618 0.90364 0.87307 0.84136 0.82746 0.83398 0.94209 0.98340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.04 11.19 21.65 0.24 -59.80 16 2 C -0.05 -2.92 4.91 84.86 0.42 -2.51 16 3 Si 0.96 49.73 29.59 68.60 2.03 51.76 16 4 H -0.29 -15.04 7.11 99.48 0.71 -14.34 16 5 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 6 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.27 -15.99 9.58 84.03 0.81 -15.19 16 8 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16 9 N -0.61 -32.98 2.99 -699.08 -2.09 -35.07 16 10 C 0.14 5.70 6.52 86.36 0.56 6.27 16 11 C -0.12 -3.97 6.08 30.67 0.19 -3.78 16 12 C -0.10 -3.21 5.35 30.62 0.16 -3.05 16 13 C 0.14 5.62 2.60 45.07 0.12 5.74 16 14 H 0.04 2.10 7.58 -2.39 -0.02 2.08 16 15 N -0.71 -24.56 5.07 -445.70 -2.26 -26.82 16 16 C 0.57 22.93 7.77 86.58 0.67 23.61 16 17 O -0.58 -30.30 13.74 -4.15 -0.06 -30.35 16 18 C -0.25 -7.77 6.29 -18.91 -0.12 -7.88 16 19 C 0.07 1.29 11.38 83.87 0.95 2.24 16 20 N -0.52 -6.18 5.88 -193.89 -1.14 -7.32 16 21 H 0.44 1.10 8.96 -92.71 -0.83 0.26 16 22 C 0.02 0.35 11.80 83.43 0.98 1.33 16 23 C -0.13 -3.65 5.79 -18.77 -0.11 -3.76 16 24 C -0.02 -0.62 5.40 -20.05 -0.11 -0.73 16 25 C -0.10 -3.84 7.94 22.49 0.18 -3.67 16 26 C -0.15 -5.29 10.03 22.24 0.22 -5.07 16 27 C -0.13 -3.68 10.04 22.31 0.22 -3.46 16 28 C -0.12 -3.04 10.03 22.24 0.22 -2.82 16 29 C -0.11 -2.99 9.72 22.49 0.22 -2.78 16 30 C 0.18 9.63 4.89 86.36 0.42 10.06 16 31 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.41 10.05 7.54 -92.71 -0.70 9.36 16 39 H 0.21 1.94 7.44 -2.91 -0.02 1.92 16 40 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.08 3.73 7.49 -2.91 -0.02 3.71 16 42 H 0.11 3.93 8.06 -2.91 -0.02 3.90 16 43 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 44 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 45 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 46 H 0.04 2.54 6.04 -2.39 -0.01 2.53 16 47 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 Total: -1.00 -92.03 384.23 2.21 -89.82 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.53 Total: 23.23 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 6.02 Total: -5.44 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.25 Total: -129.01 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.06 Total: -30.35 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.03 Total: 51.76 kcal Total: -92.03 2.21 -89.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009511817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.347 kcal (2) G-P(sol) polarization free energy of solvation -92.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds