Wall clock time and date at job start Sat Apr 11 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47250 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47165 * 120.00120 * 3 2 1 6 6 H 1.48504 * 109.47405 * 240.00305 * 3 2 1 7 7 C 1.38811 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 162.28873 * 7 2 1 9 9 N 1.36943 * 120.00018 * 342.28973 * 7 2 1 10 10 C 1.46844 * 120.37796 * 330.95783 * 9 7 2 11 11 C 1.52871 * 109.07030 * 236.85328 * 10 9 7 12 12 C 1.53177 * 108.82625 * 308.91367 * 11 10 9 13 13 C 1.52856 * 117.65644 * 269.85036 * 12 11 10 14 14 C 1.52822 * 117.71182 * 200.99276 * 12 11 10 15 15 H 1.09003 * 117.50022 * 215.09393 * 14 12 11 16 16 N 1.46495 * 117.50158 * 0.13689 * 14 12 11 17 17 C 1.34782 * 119.99507 * 205.00150 * 16 14 12 18 18 O 1.21586 * 120.00401 * 359.97438 * 17 16 14 19 19 C 1.47583 * 119.99578 * 180.02562 * 17 16 14 20 20 C 1.40236 * 119.83370 * 359.72284 * 19 17 16 21 21 C 1.36202 * 120.37920 * 179.77259 * 20 19 17 22 22 C 1.39917 * 119.95845 * 0.49111 * 21 20 19 23 23 C 1.46256 * 133.84000 * 179.79456 * 22 21 20 24 24 C 1.34454 * 107.03214 * 179.97438 * 23 22 21 25 25 N 1.36560 * 109.97963 * 0.02562 * 24 23 22 26 26 H 0.97003 * 125.06833 * 180.02562 * 25 24 23 27 27 C 1.37823 * 109.85696 * 359.97438 * 25 24 23 28 28 C 1.38682 * 133.37038 * 180.02562 * 27 25 24 29 29 C 1.53178 * 115.07906 * 55.31819 * 12 11 10 30 30 C 1.46839 * 120.37901 * 151.22549 * 9 7 2 31 31 H 0.97000 * 119.99597 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.57737 * 356.68311 * 10 9 7 33 33 H 1.08990 * 109.58155 * 117.08998 * 10 9 7 34 34 H 1.09009 * 109.66214 * 189.04410 * 11 10 9 35 35 H 1.09001 * 109.45030 * 68.65491 * 11 10 9 36 36 H 1.09003 * 117.50266 * 359.76122 * 13 12 11 37 37 H 1.08991 * 117.50321 * 144.78196 * 13 12 11 38 38 H 0.96995 * 120.00118 * 25.00480 * 16 14 12 39 39 H 1.08001 * 119.81321 * 359.97438 * 20 19 17 40 40 H 1.08000 * 120.02072 * 180.25562 * 21 20 19 41 41 H 1.08001 * 126.47962 * 359.97438 * 23 22 21 42 42 H 1.08004 * 125.00643 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.16608 * 359.93505 * 28 27 25 44 44 H 1.09003 * 109.59144 * 184.76231 * 29 12 11 45 45 H 1.09007 * 109.58622 * 64.33177 * 29 12 11 46 46 H 1.08997 * 109.58229 * 242.90148 * 30 9 7 47 47 H 1.08995 * 109.58407 * 3.31272 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0518 -1.2242 -0.2851 9 7 1.3742 -2.3602 0.3597 10 6 0.2549 -2.3280 1.3097 11 6 0.5769 -3.2417 2.4922 12 6 1.0002 -4.6129 1.9565 13 6 -0.0929 -5.6603 1.7452 14 6 0.8971 -5.8084 2.9029 15 1 1.6579 -6.5843 2.8183 16 7 0.3969 -5.5581 4.2569 17 6 0.7354 -6.3872 5.2642 18 8 1.4555 -7.3430 5.0490 19 6 0.2311 -6.1354 6.6281 20 6 -0.5953 -5.0292 6.8732 21 6 -1.0707 -4.7889 8.1268 22 6 -0.7262 -5.6429 9.1803 23 6 -1.0485 -5.6731 10.6066 24 6 -0.4249 -6.7438 11.1286 25 7 0.2701 -7.4004 10.1535 26 1 0.7983 -8.2025 10.2896 27 6 0.1080 -6.7540 8.9471 28 6 0.5839 -6.9937 7.6667 29 6 2.1648 -4.5901 0.9618 30 6 1.8074 -3.6489 -0.1950 31 1 -0.4849 0.8401 -0.0004 32 1 0.1084 -1.3088 1.6672 33 1 -0.6522 -2.6784 0.8174 34 1 -0.3061 -3.3519 3.1217 35 1 1.3912 -2.8093 3.0737 36 1 -1.1162 -5.3766 1.9911 37 1 0.0166 -6.3383 0.8989 38 1 -0.1778 -4.7958 4.4284 39 1 -0.8589 -4.3658 6.0628 40 1 -1.7101 -3.9377 8.3082 41 1 -1.6698 -4.9686 11.1395 42 1 -0.4668 -7.0403 12.1663 43 1 1.2248 -7.8418 7.4759 44 1 2.3356 -5.5951 0.5758 45 1 3.0647 -4.2303 1.4609 46 1 0.9993 -4.0836 -0.7831 47 1 2.6823 -3.4988 -0.8275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016854799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:23 Heat of formation + Delta-G solvation = 71.705216 kcal Electronic energy + Delta-G solvation = -28394.078335 eV Core-core repulsion = 24543.419935 eV Total energy + Delta-G solvation = -3850.658400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.56406 -39.98774 -38.49052 -36.73145 -35.46342 -33.18370 -32.25676 -31.50963 -30.12409 -29.72020 -29.27509 -28.13367 -24.35197 -24.13874 -22.83412 -22.42084 -21.73993 -21.05216 -20.75903 -20.19665 -18.61752 -18.18808 -17.21877 -16.59929 -16.22061 -16.05239 -15.05442 -14.92998 -14.75237 -14.50693 -14.33205 -14.06612 -14.00533 -13.67917 -13.52279 -13.39959 -13.28749 -12.97650 -12.60352 -12.31788 -12.09201 -11.89057 -11.67445 -11.47716 -11.34613 -11.26452 -10.94190 -10.70443 -10.49309 -10.27809 -10.06903 -10.02908 -9.90168 -9.69681 -9.55930 -9.33152 -8.62653 -8.44217 -8.38764 -8.05264 -6.62093 -5.77696 -3.20431 0.54546 1.21457 2.26298 2.69234 2.90379 3.19325 3.39392 3.45061 3.46868 3.74591 4.24517 4.37357 4.50727 4.51252 4.63178 4.81134 4.98405 5.03494 5.09008 5.17197 5.17392 5.24681 5.38449 5.40825 5.53830 5.60735 5.65746 5.72469 5.88964 6.06289 6.07907 6.13314 6.15100 6.23198 6.29717 6.31171 6.40082 6.47617 6.58862 6.62052 6.68416 6.73876 6.78386 6.85581 7.02182 7.12682 7.35853 7.55872 7.66172 7.81024 8.23505 8.48090 9.23462 9.87148 10.43832 11.30228 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.002358 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.031261 B =11872.702577 C =13067.638697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.105 4.105 12 C -0.097 4.097 13 C -0.182 4.182 14 C 0.069 3.931 15 H 0.132 0.868 16 N -0.688 5.688 17 C 0.563 3.437 18 O -0.545 6.545 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.077 4.077 22 C -0.087 4.087 23 C -0.210 4.210 24 C 0.058 3.942 25 N -0.592 5.592 26 H 0.417 0.583 27 C 0.080 3.920 28 C -0.060 4.060 29 C -0.098 4.098 30 C 0.150 3.850 31 H 0.254 0.746 32 H 0.090 0.910 33 H 0.018 0.982 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.402 0.598 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.172 0.828 43 H 0.134 0.866 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 -14.192 20.447 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.144 4.144 12 C -0.098 4.098 13 C -0.221 4.221 14 C -0.036 4.036 15 H 0.149 0.851 16 N -0.338 5.338 17 C 0.351 3.649 18 O -0.424 6.424 19 C -0.119 4.119 20 C -0.132 4.132 21 C -0.096 4.096 22 C -0.092 4.092 23 C -0.235 4.235 24 C -0.069 4.069 25 N -0.195 5.195 26 H 0.254 0.746 27 C -0.026 4.026 28 C -0.082 4.082 29 C -0.138 4.138 30 C 0.023 3.977 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.239 0.761 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.189 0.811 43 H 0.152 0.848 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.038 0.962 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.815 -14.814 20.304 25.291 hybrid contribution 0.261 0.852 0.235 0.921 sum -2.554 -13.962 20.539 24.967 Atomic orbital electron populations 1.70027 1.05252 1.25572 1.53775 1.25039 0.95254 0.98405 1.00922 0.86392 0.78960 0.83406 0.78159 1.21664 1.21044 1.20893 1.19153 0.92790 0.85026 1.41260 0.91844 1.43945 1.37754 1.01560 1.47892 1.20645 0.88919 0.98598 0.87110 1.21738 0.99109 0.93622 0.99936 1.21958 0.98224 0.91147 0.98480 1.23536 0.95959 1.03009 0.99545 1.21887 1.01006 1.02502 0.78254 0.85053 1.45302 1.51298 1.29596 1.07563 1.18094 0.80184 0.82262 0.84346 1.90746 1.37668 1.29736 1.84286 1.19505 1.01858 0.97578 0.92976 1.20775 0.98088 0.96945 0.97430 1.20199 0.99665 0.98711 0.91025 1.19409 0.99703 0.95866 0.94257 1.21756 1.07809 1.01471 0.92463 1.21901 0.96336 0.94598 0.94057 1.41776 1.44972 1.26519 1.06245 0.74578 1.18082 1.01783 0.95533 0.87251 1.20052 0.99704 0.99923 0.88490 1.21697 0.95875 0.99309 0.96896 1.20854 0.97418 0.86887 0.92539 0.93618 0.89232 0.96433 0.93803 0.92011 0.88885 0.88430 0.76081 0.85443 0.85218 0.83351 0.81060 0.84799 0.92839 0.91818 0.96239 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.23 55.49 0.62 -25.23 16 2 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 3 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.88 9.54 -15.06 -0.14 -7.02 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.56 2.94 -172.56 -0.51 -15.07 16 10 C 0.17 4.01 5.37 -3.92 -0.02 3.99 16 11 C -0.10 -1.91 5.36 -26.71 -0.14 -2.06 16 12 C -0.10 -1.61 1.94 -154.49 -0.30 -1.91 16 13 C -0.18 -2.67 9.87 -26.78 -0.26 -2.94 16 14 C 0.07 1.04 6.14 -68.00 -0.42 0.62 16 15 H 0.13 2.09 7.40 -51.93 -0.38 1.70 16 16 N -0.69 -9.53 5.29 -54.90 -0.29 -9.83 16 17 C 0.56 8.33 7.76 -12.45 -0.10 8.24 16 18 O -0.55 -9.67 15.88 5.29 0.08 -9.58 16 19 C -0.11 -1.44 5.87 -104.95 -0.62 -2.06 16 20 C -0.11 -1.21 9.46 -39.56 -0.37 -1.59 16 21 C -0.08 -0.77 10.03 -39.69 -0.40 -1.17 16 22 C -0.09 -0.90 6.37 -105.05 -0.67 -1.57 16 23 C -0.21 -1.66 11.08 -37.70 -0.42 -2.08 16 24 C 0.06 0.36 11.81 -16.78 -0.20 0.16 16 25 N -0.59 -4.23 6.07 -10.69 -0.06 -4.29 16 26 H 0.42 1.79 8.96 -40.82 -0.37 1.43 16 27 C 0.08 0.83 7.26 -84.00 -0.61 0.22 16 28 C -0.06 -0.71 9.61 -39.03 -0.37 -1.08 16 29 C -0.10 -1.72 5.83 -26.46 -0.15 -1.87 16 30 C 0.15 3.11 6.52 -3.67 -0.02 3.09 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.09 2.33 5.94 -51.93 -0.31 2.02 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.04 0.68 6.75 -51.92 -0.35 0.33 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.40 4.89 5.11 -40.82 -0.21 4.69 16 39 H 0.13 1.17 6.36 -52.49 -0.33 0.84 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.17 0.40 8.06 -52.48 -0.42 -0.03 16 43 H 0.13 1.52 7.62 -52.49 -0.40 1.12 16 44 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -33.17 380.41 -11.30 -44.47 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.54 Total: 6.32 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -5.31 Total: -9.05 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.24 Total: -54.42 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.17 -11.30 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016854799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.176 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds