Wall clock time and date at job start Sat Apr 11 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47250 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47165 * 120.00120 * 3 2 1 6 6 H 1.48504 * 109.47405 * 240.00305 * 3 2 1 7 7 C 1.38811 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 162.28873 * 7 2 1 9 9 N 1.36943 * 120.00018 * 342.28973 * 7 2 1 10 10 C 1.46844 * 120.37796 * 330.95783 * 9 7 2 11 11 C 1.52871 * 109.07030 * 236.85328 * 10 9 7 12 12 C 1.53177 * 108.82625 * 308.91367 * 11 10 9 13 13 C 1.52856 * 117.65644 * 269.85036 * 12 11 10 14 14 C 1.52822 * 117.71182 * 200.99276 * 12 11 10 15 15 H 1.09003 * 117.50022 * 215.09393 * 14 12 11 16 16 N 1.46495 * 117.50158 * 0.13689 * 14 12 11 17 17 C 1.34782 * 119.99507 * 205.00150 * 16 14 12 18 18 O 1.21586 * 120.00401 * 359.97438 * 17 16 14 19 19 C 1.47583 * 119.99578 * 180.02562 * 17 16 14 20 20 C 1.40236 * 119.83370 * 359.72284 * 19 17 16 21 21 C 1.36202 * 120.37920 * 179.77259 * 20 19 17 22 22 C 1.39917 * 119.95845 * 0.49111 * 21 20 19 23 23 C 1.46256 * 133.84000 * 179.79456 * 22 21 20 24 24 C 1.34454 * 107.03214 * 179.97438 * 23 22 21 25 25 N 1.36560 * 109.97963 * 0.02562 * 24 23 22 26 26 H 0.97003 * 125.06833 * 180.02562 * 25 24 23 27 27 C 1.37823 * 109.85696 * 359.97438 * 25 24 23 28 28 C 1.38682 * 133.37038 * 180.02562 * 27 25 24 29 29 C 1.53178 * 115.07906 * 55.31819 * 12 11 10 30 30 C 1.46839 * 120.37901 * 151.22549 * 9 7 2 31 31 H 0.97000 * 119.99597 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.57737 * 356.68311 * 10 9 7 33 33 H 1.08990 * 109.58155 * 117.08998 * 10 9 7 34 34 H 1.09009 * 109.66214 * 189.04410 * 11 10 9 35 35 H 1.09001 * 109.45030 * 68.65491 * 11 10 9 36 36 H 1.09003 * 117.50266 * 359.76122 * 13 12 11 37 37 H 1.08991 * 117.50321 * 144.78196 * 13 12 11 38 38 H 0.96995 * 120.00118 * 25.00480 * 16 14 12 39 39 H 1.08001 * 119.81321 * 359.97438 * 20 19 17 40 40 H 1.08000 * 120.02072 * 180.25562 * 21 20 19 41 41 H 1.08001 * 126.47962 * 359.97438 * 23 22 21 42 42 H 1.08004 * 125.00643 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.16608 * 359.93505 * 28 27 25 44 44 H 1.09003 * 109.59144 * 184.76231 * 29 12 11 45 45 H 1.09007 * 109.58622 * 64.33177 * 29 12 11 46 46 H 1.08997 * 109.58229 * 242.90148 * 30 9 7 47 47 H 1.08995 * 109.58407 * 3.31272 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0518 -1.2242 -0.2851 9 7 1.3742 -2.3602 0.3597 10 6 0.2549 -2.3280 1.3097 11 6 0.5769 -3.2417 2.4922 12 6 1.0002 -4.6129 1.9565 13 6 -0.0929 -5.6603 1.7452 14 6 0.8971 -5.8084 2.9029 15 1 1.6579 -6.5843 2.8183 16 7 0.3969 -5.5581 4.2569 17 6 0.7354 -6.3872 5.2642 18 8 1.4555 -7.3430 5.0490 19 6 0.2311 -6.1354 6.6281 20 6 -0.5953 -5.0292 6.8732 21 6 -1.0707 -4.7889 8.1268 22 6 -0.7262 -5.6429 9.1803 23 6 -1.0485 -5.6731 10.6066 24 6 -0.4249 -6.7438 11.1286 25 7 0.2701 -7.4004 10.1535 26 1 0.7983 -8.2025 10.2896 27 6 0.1080 -6.7540 8.9471 28 6 0.5839 -6.9937 7.6667 29 6 2.1648 -4.5901 0.9618 30 6 1.8074 -3.6489 -0.1950 31 1 -0.4849 0.8401 -0.0004 32 1 0.1084 -1.3088 1.6672 33 1 -0.6522 -2.6784 0.8174 34 1 -0.3061 -3.3519 3.1217 35 1 1.3912 -2.8093 3.0737 36 1 -1.1162 -5.3766 1.9911 37 1 0.0166 -6.3383 0.8989 38 1 -0.1778 -4.7958 4.4284 39 1 -0.8589 -4.3658 6.0628 40 1 -1.7101 -3.9377 8.3082 41 1 -1.6698 -4.9686 11.1395 42 1 -0.4668 -7.0403 12.1663 43 1 1.2248 -7.8418 7.4759 44 1 2.3356 -5.5951 0.5758 45 1 3.0647 -4.2303 1.4609 46 1 0.9993 -4.0836 -0.7831 47 1 2.6823 -3.4988 -0.8275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016854799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:21 Heat of formation + Delta-G solvation = 52.398808 kcal Electronic energy + Delta-G solvation = -28394.915524 eV Core-core repulsion = 24543.419935 eV Total energy + Delta-G solvation = -3851.495589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -42.24764 -41.14924 -39.80524 -37.59164 -37.09693 -34.59806 -33.28549 -32.94668 -31.77162 -30.57465 -30.10579 -29.61399 -26.22456 -25.07617 -24.04452 -23.57122 -23.07547 -22.23180 -21.61039 -21.29393 -19.82622 -19.38997 -18.44812 -17.84041 -17.37878 -17.03940 -16.79456 -16.05955 -15.90386 -15.69281 -15.36346 -15.31230 -15.02862 -14.98809 -14.80406 -14.65057 -14.31149 -14.13897 -13.91269 -13.76026 -13.33042 -13.05336 -12.94193 -12.79940 -12.68385 -12.55253 -12.47317 -12.32184 -12.04471 -11.99029 -11.76395 -11.38025 -11.26453 -11.13024 -10.79056 -10.68743 -10.46732 -9.72579 -9.28933 -8.72040 -8.59801 -7.84704 -5.30441 -0.27836 0.44351 1.47789 1.49821 1.56645 1.57363 1.91757 1.99665 2.31163 2.53066 2.84711 3.02696 3.29905 3.60047 3.66103 3.75077 3.82119 3.86547 3.96741 4.00798 4.13807 4.14544 4.28059 4.35163 4.54083 4.58839 4.67730 4.71955 4.72966 4.86949 4.90312 4.95748 4.99413 5.01431 5.02219 5.10269 5.22786 5.26929 5.31651 5.38739 5.46496 5.48296 5.55677 5.66393 5.67599 5.75569 5.80244 6.07839 6.43046 6.46540 6.64939 7.12245 7.18642 7.90728 8.41606 9.20337 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.002358 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.031261 B =11872.702577 C =13067.638697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.048 4.048 3 Si 0.963 3.037 4 H -0.293 1.293 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.062 0.938 9 N -0.608 5.608 10 C 0.180 3.820 11 C -0.090 4.090 12 C -0.115 4.115 13 C -0.168 4.168 14 C 0.083 3.917 15 H 0.127 0.873 16 N -0.683 5.683 17 C 0.563 3.437 18 O -0.582 6.582 19 C -0.138 4.138 20 C -0.117 4.117 21 C -0.083 4.083 22 C -0.101 4.101 23 C -0.233 4.233 24 C 0.079 3.921 25 N -0.586 5.586 26 H 0.430 0.570 27 C 0.061 3.939 28 C -0.066 4.066 29 C -0.088 4.088 30 C 0.146 3.854 31 H 0.250 0.750 32 H 0.056 0.944 33 H 0.000 1.000 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.410 0.590 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.167 0.833 42 H 0.216 0.784 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 -15.121 22.830 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.219 1.219 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.394 4.394 8 H 0.079 0.921 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.129 4.129 12 C -0.116 4.116 13 C -0.206 4.206 14 C -0.023 4.023 15 H 0.145 0.855 16 N -0.333 5.333 17 C 0.353 3.647 18 O -0.463 6.463 19 C -0.143 4.143 20 C -0.137 4.137 21 C -0.102 4.102 22 C -0.107 4.107 23 C -0.258 4.258 24 C -0.048 4.048 25 N -0.189 5.189 26 H 0.270 0.730 27 C -0.046 4.046 28 C -0.087 4.087 29 C -0.127 4.127 30 C 0.021 3.979 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.018 0.982 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.249 0.751 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.185 0.815 42 H 0.233 0.767 43 H 0.146 0.854 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.085 -15.766 22.696 27.806 hybrid contribution 0.334 1.070 -0.403 1.191 sum -2.751 -14.695 22.293 26.842 Atomic orbital electron populations 1.70169 1.06510 1.25879 1.55133 1.25748 0.96020 1.01310 1.01294 0.85406 0.77667 0.79529 0.78235 1.21870 1.20628 1.20269 1.19449 0.92965 0.86353 1.40677 0.92063 1.44218 1.37935 1.02257 1.48756 1.20450 0.88051 0.97767 0.88304 1.21472 0.99826 0.93579 0.97991 1.21819 0.99267 0.90804 0.99719 1.23627 0.95788 1.01547 0.99635 1.21727 1.01054 1.00746 0.78820 0.85527 1.45251 1.51143 1.29802 1.07066 1.18446 0.79436 0.81607 0.85183 1.90715 1.39422 1.31261 1.84929 1.19401 1.03742 0.99183 0.91933 1.20897 0.97890 0.96601 0.98328 1.20474 0.99680 0.99312 0.90699 1.19866 0.99417 0.95686 0.95715 1.22097 1.09249 1.03020 0.91398 1.22640 0.93741 0.93082 0.95369 1.41912 1.44801 1.26785 1.05432 0.73039 1.18136 1.02309 0.96395 0.87759 1.20080 0.99728 0.99681 0.89257 1.21537 0.95743 0.99714 0.95684 1.20976 0.97098 0.85993 0.93840 0.94067 0.92571 0.98188 0.91083 0.93258 0.88076 0.87005 0.75096 0.84293 0.83206 0.81526 0.76734 0.85367 0.89977 0.92835 0.96320 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 11.23 21.65 0.24 -54.49 16 2 C -0.05 -2.69 4.89 84.86 0.41 -2.28 16 3 Si 0.96 45.00 29.59 68.60 2.03 47.03 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.26 -14.64 9.54 84.03 0.80 -13.84 16 8 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 9 N -0.61 -30.60 2.94 -699.85 -2.06 -32.65 16 10 C 0.18 8.51 5.37 86.27 0.46 8.97 16 11 C -0.09 -3.25 5.36 30.61 0.16 -3.08 16 12 C -0.11 -3.68 1.94 -52.17 -0.10 -3.78 16 13 C -0.17 -4.58 9.87 30.56 0.30 -4.28 16 14 C 0.08 2.37 6.14 44.95 0.28 2.65 16 15 H 0.13 3.86 7.40 -2.39 -0.02 3.84 16 16 N -0.68 -18.31 5.29 -445.87 -2.36 -20.67 16 17 C 0.56 16.63 7.76 86.71 0.67 17.30 16 18 O -0.58 -20.83 15.88 -3.99 -0.06 -20.89 16 19 C -0.14 -3.48 5.87 -20.07 -0.12 -3.59 16 20 C -0.12 -2.45 9.46 22.28 0.21 -2.24 16 21 C -0.08 -1.57 10.03 22.20 0.22 -1.34 16 22 C -0.10 -1.94 6.37 -20.14 -0.13 -2.07 16 23 C -0.23 -3.05 11.08 23.49 0.26 -2.79 16 24 C 0.08 0.69 11.81 83.09 0.98 1.67 16 25 N -0.59 -7.00 6.07 -187.72 -1.14 -8.14 16 26 H 0.43 2.71 8.96 -92.71 -0.83 1.88 16 27 C 0.06 1.20 7.26 38.96 0.28 1.48 16 28 C -0.07 -1.55 9.61 22.63 0.22 -1.33 16 29 C -0.09 -2.97 5.83 30.77 0.18 -2.79 16 30 C 0.15 6.09 6.52 86.43 0.56 6.65 16 31 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.06 3.02 5.94 -2.39 -0.01 3.01 16 33 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.07 2.15 6.75 -2.38 -0.02 2.13 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.41 9.48 5.11 -92.71 -0.47 9.01 16 39 H 0.14 2.41 6.36 -2.91 -0.02 2.39 16 40 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.22 -0.12 8.06 -2.91 -0.02 -0.14 16 43 H 0.13 3.01 7.62 -2.91 -0.02 2.99 16 44 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 45 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.05 2.15 7.92 -2.39 -0.02 2.13 16 Total: -1.00 -73.69 380.41 2.02 -71.67 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.29 Total: 22.83 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 5.66 Total: -4.69 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -5.32 Total: -115.95 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -73.69 2.02 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016854799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.065 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds