Wall clock time and date at job start Sat Apr 11 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48505 * 109.47312 * 270.00379 * 3 2 1 5 5 H 1.48496 * 109.47171 * 30.00305 * 3 2 1 6 6 H 1.48500 * 109.47194 * 150.00149 * 3 2 1 7 7 C 1.38806 * 120.00620 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00321 * 197.84818 * 7 2 1 9 9 N 1.36944 * 119.99655 * 17.84888 * 7 2 1 10 10 C 1.46849 * 120.38094 * 208.90606 * 9 7 2 11 11 C 1.53345 * 108.81378 * 236.88534 * 10 9 7 12 12 C 1.53190 * 108.76986 * 308.68659 * 11 10 9 13 13 C 1.52844 * 117.65635 * 269.97784 * 12 11 10 14 14 C 1.52810 * 117.71455 * 201.11677 * 12 11 10 15 15 H 1.09001 * 117.52955 * 0.14869 * 14 12 11 16 16 N 1.46500 * 117.50075 * 215.09568 * 14 12 11 17 17 C 1.34778 * 120.00041 * 155.02511 * 16 14 12 18 18 O 1.21594 * 120.00114 * 0.02562 * 17 16 14 19 19 C 1.47502 * 119.99961 * 180.02562 * 17 16 14 20 20 C 1.41200 * 126.37338 * 359.96040 * 19 17 16 21 21 C 1.37992 * 106.86432 * 180.02562 * 20 19 17 22 22 C 1.41393 * 131.98410 * 179.97438 * 21 20 19 23 23 C 1.35734 * 119.32955 * 179.68891 * 22 21 20 24 24 C 1.40836 * 119.72139 * 0.61879 * 23 22 21 25 25 C 1.34529 * 120.57972 * 359.40965 * 24 23 22 26 26 N 1.37441 * 120.74714 * 0.26942 * 25 24 23 27 27 C 1.35131 * 131.28448 * 180.02562 * 26 25 24 28 28 C 1.53189 * 115.07399 * 55.44545 * 12 11 10 29 29 C 1.46837 * 120.38302 * 28.89117 * 9 7 2 30 30 H 0.96998 * 120.00253 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.57538 * 117.08479 * 10 9 7 32 32 H 1.08996 * 109.58378 * 356.68815 * 10 9 7 33 33 H 1.09000 * 109.58985 * 188.89961 * 11 10 9 34 34 H 1.09004 * 109.59195 * 68.46959 * 11 10 9 35 35 H 1.08998 * 117.50458 * 144.81488 * 13 12 11 36 36 H 1.08996 * 117.53066 * 359.74568 * 13 12 11 37 37 H 0.96998 * 120.00029 * 335.02518 * 16 14 12 38 38 H 1.08000 * 126.56648 * 0.02562 * 20 19 17 39 39 H 1.07996 * 120.33233 * 0.03724 * 22 21 20 40 40 H 1.08001 * 120.13978 * 180.30248 * 23 22 21 41 41 H 1.07999 * 119.70791 * 179.67887 * 24 23 22 42 42 H 1.08004 * 119.63272 * 180.25386 * 25 24 23 43 43 H 1.07995 * 125.61564 * 359.95896 * 27 26 25 44 44 H 1.08994 * 109.58697 * 64.34709 * 28 12 11 45 45 H 1.09000 * 109.58611 * 184.77845 * 28 12 11 46 46 H 1.09006 * 109.57659 * 242.91974 * 29 9 7 47 47 H 1.09000 * 109.58052 * 3.31341 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0514 -1.2246 0.2861 9 7 1.3751 -2.3593 -0.3646 10 6 1.8054 -3.6489 0.1905 11 6 2.1669 -4.5891 -0.9657 12 6 1.0061 -4.6104 -1.9650 13 6 -0.0882 -5.6575 -1.7592 14 6 0.9062 -5.8048 -2.9130 15 1 1.6661 -6.5815 -2.8266 16 7 0.4115 -5.5529 -4.2687 17 6 0.7531 -6.3813 -5.2755 18 8 1.4716 -7.3379 -5.0585 19 6 0.2554 -6.1273 -6.6406 20 6 -0.5820 -5.0638 -7.0423 21 6 -0.7965 -5.2128 -8.3972 22 6 -1.5457 -4.4536 -9.3254 23 6 -1.5760 -4.8368 -10.6272 24 6 -0.8742 -5.9886 -11.0326 25 6 -0.1643 -6.7059 -10.1430 26 7 -0.1133 -6.3338 -8.8209 27 6 0.5212 -6.8857 -7.7632 28 6 0.5856 -3.2383 -2.5010 29 6 0.2557 -2.3249 -1.3142 30 1 -0.4850 0.8400 0.0004 31 1 0.9946 -4.0837 0.7751 32 1 2.6779 -3.5000 0.8267 33 1 2.3356 -5.5946 -0.5801 34 1 3.0689 -4.2294 -1.4610 35 1 -1.1103 -5.3732 -2.0088 36 1 0.0176 -6.3372 -0.9137 37 1 -0.1620 -4.7900 -4.4418 38 1 -0.9787 -4.2831 -6.4101 39 1 -2.0838 -3.5746 -9.0029 40 1 -2.1400 -4.2637 -11.3482 41 1 -0.9027 -6.2962 -12.0674 42 1 0.3715 -7.5843 -10.4714 43 1 1.1347 -7.7741 -7.7913 44 1 1.4022 -2.8059 -3.0790 45 1 -0.2951 -3.3475 -3.1339 46 1 -0.6511 -2.6777 -0.8228 47 1 0.1083 -1.3047 -1.6683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016862357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:42 Heat of formation + Delta-G solvation = 87.380976 kcal Electronic energy + Delta-G solvation = -28392.034236 eV Core-core repulsion = 24542.055588 eV Total energy + Delta-G solvation = -3849.978648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.48278 -39.75780 -38.28923 -36.65384 -35.41122 -33.57305 -32.90353 -31.47412 -30.20095 -30.06986 -28.20145 -28.03137 -24.75775 -24.29911 -23.13403 -22.42350 -22.05763 -21.52888 -20.60318 -19.86921 -18.20709 -18.00259 -17.16263 -16.64714 -16.43237 -15.78362 -15.76178 -15.46587 -14.81136 -14.75035 -14.48587 -14.23759 -14.07207 -13.69441 -13.50930 -13.28162 -12.97703 -12.71321 -12.57454 -12.27845 -12.21059 -11.96060 -11.70775 -11.61570 -11.45341 -11.31676 -10.93116 -10.77638 -10.72269 -10.45896 -10.24729 -10.01004 -9.89078 -9.66432 -9.54347 -9.30525 -8.89135 -8.43739 -8.33112 -7.70376 -6.61508 -5.76994 -3.19847 0.42084 1.04240 1.91673 2.30909 3.15738 3.29237 3.39026 3.45965 3.46225 3.47375 4.14189 4.28241 4.41294 4.45879 4.51725 4.60879 4.74942 4.96935 5.05813 5.13771 5.16802 5.20767 5.23481 5.41314 5.45797 5.55762 5.56382 5.67647 5.77123 5.90145 5.97517 5.98673 6.10580 6.15504 6.19233 6.32621 6.39874 6.49869 6.53408 6.61556 6.66505 6.72226 6.76453 6.87457 6.92388 7.03719 7.37247 7.65041 7.67525 7.82068 8.33534 8.48739 9.24155 9.87841 10.44584 11.30731 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.002439 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.907306 B =11477.366092 C =12920.284680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.097 4.097 13 C -0.183 4.183 14 C 0.071 3.929 15 H 0.132 0.868 16 N -0.687 5.687 17 C 0.590 3.410 18 O -0.550 6.550 19 C -0.167 4.167 20 C -0.161 4.161 21 C 0.027 3.973 22 C -0.073 4.073 23 C -0.137 4.137 24 C -0.135 4.135 25 C 0.041 3.959 26 N -0.342 5.342 27 C 0.019 3.981 28 C -0.104 4.104 29 C 0.173 3.827 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.402 0.598 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.162 0.838 43 H 0.182 0.818 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.018 0.982 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.148 -12.984 -20.939 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.098 4.098 13 C -0.221 4.221 14 C -0.035 4.035 15 H 0.149 0.851 16 N -0.336 5.336 17 C 0.377 3.623 18 O -0.429 6.429 19 C -0.175 4.175 20 C -0.185 4.185 21 C -0.077 4.077 22 C -0.092 4.092 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.077 4.077 26 N -0.006 5.006 27 C -0.115 4.115 28 C -0.144 4.144 29 C 0.047 3.953 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.238 0.762 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.179 0.821 43 H 0.199 0.801 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.036 0.964 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.696 -13.646 -20.969 25.290 hybrid contribution 0.016 1.204 -0.196 1.220 sum -3.680 -12.443 -21.165 24.826 Atomic orbital electron populations 1.70035 1.05250 1.25441 1.53932 1.25040 0.95253 0.98412 1.00975 0.86312 0.79178 0.83744 0.77686 1.21472 1.21819 1.20438 1.19212 0.92865 0.85054 1.40943 0.91758 1.43978 1.37815 1.01566 1.47844 1.20859 0.97409 0.86895 0.92558 1.21691 0.95934 0.99279 0.96843 1.21951 0.98215 0.91182 0.98496 1.23531 0.95918 1.03010 0.99658 1.21865 1.00958 1.02399 0.78248 0.85071 1.45177 1.51503 1.29572 1.07307 1.17333 0.79652 0.81985 0.83285 1.90748 1.37989 1.29855 1.84294 1.19549 1.05375 0.99225 0.93331 1.21248 1.03733 1.01095 0.92463 1.18800 1.02697 0.91714 0.94483 1.20713 0.97370 0.99057 0.92044 1.20951 1.01138 0.97495 0.96106 1.20739 0.98712 0.96295 0.99805 1.21679 1.03034 1.01799 0.81214 1.41327 1.32794 1.19895 1.06577 1.21991 1.03453 1.02024 0.83992 1.21806 0.99119 0.93602 0.99843 1.20749 0.88853 0.98604 0.87053 0.93685 0.96249 0.92691 0.92844 0.91830 0.88926 0.88479 0.76165 0.82899 0.83775 0.84820 0.83702 0.82090 0.80124 0.92037 0.93798 0.96410 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.23 55.49 0.62 -25.32 16 2 C 0.00 0.05 4.88 -17.43 -0.09 -0.04 16 3 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.86 9.54 -15.06 -0.14 -7.00 16 8 H 0.06 1.74 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.65 2.94 -172.26 -0.51 -15.15 16 10 C 0.15 3.13 6.51 -3.67 -0.02 3.10 16 11 C -0.10 -1.73 5.83 -26.45 -0.15 -1.88 16 12 C -0.10 -1.63 1.94 -154.49 -0.30 -1.93 16 13 C -0.18 -2.72 9.86 -26.79 -0.26 -2.99 16 14 C 0.07 1.08 6.14 -68.01 -0.42 0.67 16 15 H 0.13 2.11 7.40 -51.93 -0.38 1.73 16 16 N -0.69 -9.75 5.34 -54.94 -0.29 -10.05 16 17 C 0.59 8.92 7.82 -12.48 -0.10 8.82 16 18 O -0.55 -9.90 16.46 5.28 0.09 -9.82 16 19 C -0.17 -2.15 6.12 -105.06 -0.64 -2.80 16 20 C -0.16 -1.82 10.44 -38.55 -0.40 -2.22 16 21 C 0.03 0.28 6.70 -84.00 -0.56 -0.28 16 22 C -0.07 -0.59 10.11 -39.28 -0.40 -0.99 16 23 C -0.14 -0.89 10.07 -39.50 -0.40 -1.29 16 24 C -0.14 -0.80 9.97 -39.91 -0.40 -1.19 16 25 C 0.04 0.29 10.89 -16.35 -0.18 0.11 16 26 N -0.34 -3.43 2.92 -60.42 -0.18 -3.60 16 27 C 0.02 0.22 11.37 -16.16 -0.18 0.03 16 28 C -0.10 -1.93 5.37 -26.45 -0.14 -2.07 16 29 C 0.17 4.04 5.40 -3.68 -0.02 4.02 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 33 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.40 5.08 6.09 -40.82 -0.25 4.83 16 38 H 0.15 1.45 7.53 -52.49 -0.40 1.05 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 41 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.04 0.70 6.75 -51.93 -0.35 0.35 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 2.34 5.93 -51.93 -0.31 2.03 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -33.17 383.83 -11.04 -44.21 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.72 Total: 5.26 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -4.81 Total: -7.92 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.35 Total: -54.12 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.17 -11.04 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016862357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.592 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds