Wall clock time and date at job start Sat Apr 11 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99827 * 2 1 4 4 H 1.48501 * 109.47397 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47261 * 120.00161 * 3 2 1 6 6 H 1.48498 * 109.47277 * 240.00130 * 3 2 1 7 7 C 1.38808 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99899 * 191.60827 * 7 2 1 9 9 N 1.36932 * 120.00278 * 11.61219 * 7 2 1 10 10 C 1.46926 * 120.63369 * 36.46848 * 9 7 2 11 11 C 1.53190 * 108.77545 * 126.36781 * 10 9 7 12 12 C 1.53037 * 109.31275 * 54.64072 * 11 10 9 13 13 C 1.53046 * 109.53491 * 298.63015 * 12 11 10 14 14 C 1.46929 * 120.63151 * 216.18653 * 9 7 2 15 15 H 1.09000 * 109.58551 * 113.84039 * 14 9 7 16 16 C 1.53005 * 109.58560 * 353.42256 * 14 9 7 17 17 N 1.46498 * 109.47327 * 60.65819 * 16 14 9 18 18 C 1.34782 * 119.99879 * 180.02562 * 17 16 14 19 19 O 1.21587 * 119.99834 * 0.02562 * 18 17 16 20 20 C 1.47550 * 119.99571 * 179.97438 * 18 17 16 21 21 C 1.38695 * 120.38821 * 354.98177 * 20 18 17 22 22 C 1.38979 * 120.53558 * 179.69621 * 21 20 18 23 23 C 1.36213 * 121.23544 * 0.57996 * 22 21 20 24 24 C 1.40713 * 120.20001 * 359.72159 * 23 22 21 25 25 N 1.33683 * 120.93182 * 179.97438 * 24 23 22 26 26 C 1.31066 * 121.33727 * 180.02562 * 25 24 23 27 27 C 1.39340 * 121.71019 * 359.96242 * 26 25 24 28 28 C 1.36676 * 119.86632 * 0.02562 * 27 26 25 29 29 C 1.40470 * 118.17291 * 359.97438 * 28 27 26 30 30 H 0.96996 * 119.99578 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58751 * 246.15696 * 10 9 7 32 32 H 1.09000 * 109.58164 * 6.43899 * 10 9 7 33 33 H 1.09005 * 109.49457 * 174.58638 * 11 10 9 34 34 H 1.08992 * 109.50074 * 294.68144 * 11 10 9 35 35 H 1.08995 * 109.46511 * 58.65158 * 12 11 10 36 36 H 1.09002 * 109.45936 * 178.62643 * 12 11 10 37 37 H 1.08997 * 109.49344 * 181.31822 * 13 12 11 38 38 H 1.08998 * 109.49732 * 301.41647 * 13 12 11 39 39 H 1.08997 * 109.47507 * 180.66680 * 16 14 9 40 40 H 1.09007 * 109.46557 * 300.66000 * 16 14 9 41 41 H 0.97002 * 120.00185 * 0.02562 * 17 16 14 42 42 H 1.07988 * 119.73328 * 359.97438 * 21 20 18 43 43 H 1.07996 * 119.38251 * 180.26173 * 22 21 20 44 44 H 1.07995 * 119.89615 * 179.70335 * 23 22 21 45 45 H 1.08004 * 119.14719 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.06898 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.91362 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0737 -1.2117 0.1887 9 7 1.3466 -2.3760 -0.2376 10 6 0.2433 -2.4290 -1.2065 11 6 0.5298 -3.5417 -2.2196 12 6 0.7743 -4.8552 -1.4732 13 6 1.9945 -4.7062 -0.5614 14 6 1.7283 -3.6079 0.4663 15 1 0.9180 -3.9175 1.1264 16 6 2.9952 -3.3581 1.2870 17 7 2.7377 -2.3079 2.2754 18 6 3.7171 -1.9182 3.1154 19 8 4.8144 -2.4380 3.0524 20 6 3.4578 -0.8600 4.1104 21 6 2.2441 -0.1889 4.1208 22 6 1.9942 0.8039 5.0607 23 6 2.9314 1.1531 5.9854 24 6 4.1794 0.5035 6.0085 25 7 5.1099 0.8349 6.9093 26 6 6.2751 0.2354 6.9377 27 6 6.6015 -0.7743 6.0346 28 6 5.6941 -1.1605 5.0883 29 6 4.4470 -0.5145 5.0626 30 1 -0.4849 0.8400 -0.0004 31 1 -0.6905 -2.6405 -0.6857 32 1 0.1648 -1.4726 -1.7234 33 1 -0.3251 -3.6558 -2.8861 34 1 1.4142 -3.2843 -2.8024 35 1 -0.1010 -5.0993 -0.8713 36 1 0.9544 -5.6538 -2.1929 37 1 2.1820 -5.6491 -0.0478 38 1 2.8651 -4.4378 -1.1598 39 1 3.2834 -4.2762 1.7990 40 1 3.8013 -3.0435 0.6241 41 1 1.8623 -1.8930 2.3253 42 1 1.4853 -0.4430 3.3956 43 1 1.0411 1.3116 5.0545 44 1 2.7160 1.9311 6.7028 45 1 7.0011 0.5315 7.6805 46 1 7.5699 -1.2502 6.0817 47 1 5.9291 -1.9414 4.3803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024581908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:50 Heat of formation + Delta-G solvation = 41.857410 kcal Electronic energy + Delta-G solvation = -30000.706490 eV Core-core repulsion = 26148.753792 eV Total energy + Delta-G solvation = -3851.952698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.87857 -39.16514 -37.79140 -36.74442 -34.38050 -33.18409 -33.09192 -31.22934 -30.43477 -30.06522 -29.66948 -26.15546 -25.04643 -24.25453 -23.32184 -22.74428 -22.20458 -20.74887 -20.16229 -19.18865 -18.04451 -17.44351 -16.73601 -16.47662 -15.77197 -15.61109 -15.46817 -14.65114 -14.61126 -14.19787 -14.09180 -13.99932 -13.67895 -13.59621 -13.43327 -13.02604 -12.91952 -12.64784 -12.48412 -12.06089 -11.94193 -11.87165 -11.53575 -11.28420 -11.18696 -11.00138 -10.85230 -10.65813 -10.36263 -10.33847 -10.21898 -10.06561 -9.94540 -9.60780 -9.45315 -8.96480 -8.71860 -8.68239 -8.43450 -8.06761 -6.67078 -5.93854 -3.45921 0.29194 0.91379 1.90437 2.83032 3.28274 3.33809 3.39089 3.52540 3.68333 4.28051 4.32202 4.35189 4.80118 4.85918 4.96208 5.09631 5.12443 5.17834 5.22569 5.23747 5.43434 5.48890 5.53904 5.58795 5.63375 5.89514 5.93154 5.95083 6.00867 6.06843 6.09212 6.20819 6.28016 6.30995 6.35502 6.41228 6.46826 6.53938 6.64448 6.66964 6.69196 6.79777 6.87566 6.92820 7.11494 7.28836 7.54111 7.70908 7.94368 8.12369 8.35071 8.71718 9.07792 9.67131 10.29140 11.12054 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.003966 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.827073 B = 7058.631414 C = 8261.829887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.017 3.983 3 Si 0.885 3.115 4 H -0.289 1.289 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.587 5.587 10 C 0.176 3.824 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.134 3.866 17 N -0.680 5.680 18 C 0.553 3.447 19 O -0.560 6.560 20 C -0.106 4.106 21 C -0.067 4.067 22 C -0.106 4.106 23 C -0.077 4.077 24 C 0.115 3.885 25 N -0.481 5.481 26 C 0.125 3.875 27 C -0.188 4.188 28 C -0.057 4.057 29 C -0.066 4.066 30 H 0.256 0.744 31 H 0.020 0.980 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.416 0.584 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.155 0.845 46 H 0.135 0.865 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 -3.708 8.015 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.183 4.183 3 Si 0.714 3.286 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.051 3.949 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.329 5.329 18 C 0.341 3.659 19 O -0.442 6.442 20 C -0.110 4.110 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.096 4.096 24 C -0.006 4.006 25 N -0.189 5.189 26 C -0.047 4.047 27 C -0.208 4.208 28 C -0.082 4.082 29 C -0.069 4.069 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.255 0.745 42 H 0.161 0.839 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.172 0.828 46 H 0.153 0.847 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.345 -3.246 8.511 10.093 hybrid contribution 0.203 0.650 -0.766 1.024 sum 4.548 -2.597 7.746 9.350 Atomic orbital electron populations 1.69984 1.05105 1.25798 1.52856 1.25164 0.95150 0.98026 0.99983 0.86643 0.79330 0.83870 0.78767 1.21433 1.20363 1.20894 1.19040 0.91149 0.83657 1.44674 0.91827 1.44002 1.39082 1.04062 1.44008 1.20698 0.89308 0.96139 0.88792 1.22191 1.00165 0.96924 0.99095 1.21355 0.97789 0.97368 0.97962 1.21867 0.98472 0.98057 0.98341 1.20663 0.93496 0.88711 0.91810 0.95026 1.21345 0.98640 0.89067 0.89893 1.45944 1.15346 1.38624 1.33000 1.18000 0.84628 0.82236 0.81077 1.90471 1.23502 1.57984 1.72290 1.19975 0.94737 0.98949 0.97315 1.21702 0.96126 0.93781 0.97028 1.20896 0.99919 0.97206 0.94505 1.20932 0.91117 0.98888 0.98674 1.18823 0.94446 0.94653 0.92644 1.68010 1.01921 1.26919 1.22033 1.22921 0.93298 0.91869 0.96627 1.21998 1.01348 0.99938 0.97498 1.22728 0.91021 0.97878 0.96552 1.18655 0.95074 0.97140 0.96033 0.93400 0.96166 0.90530 0.93517 0.92822 0.92834 0.93674 0.92962 0.92087 0.92392 0.91313 0.74509 0.83860 0.84556 0.84623 0.82762 0.84744 0.80330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.99 11.51 55.49 0.64 -22.35 16 2 C 0.02 0.43 4.99 -17.43 -0.09 0.34 16 3 Si 0.88 20.49 29.57 -169.99 -5.03 15.47 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.09 6.76 -15.06 -0.10 -6.19 16 8 H 0.06 1.59 6.14 -52.49 -0.32 1.27 16 9 N -0.59 -12.78 2.95 -165.03 -0.49 -13.27 16 10 C 0.18 3.79 5.24 -3.71 -0.02 3.77 16 11 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 12 C -0.11 -1.68 5.89 -26.69 -0.16 -1.83 16 13 C -0.13 -2.04 5.34 -26.83 -0.14 -2.19 16 14 C 0.16 2.94 2.99 -67.82 -0.20 2.74 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.13 2.43 4.43 -4.04 -0.02 2.41 16 17 N -0.68 -12.64 3.90 -61.34 -0.24 -12.88 16 18 C 0.55 10.48 7.73 -12.46 -0.10 10.39 16 19 O -0.56 -11.29 13.40 5.29 0.07 -11.22 16 20 C -0.11 -1.87 5.90 -104.66 -0.62 -2.49 16 21 C -0.07 -1.09 9.52 -39.14 -0.37 -1.47 16 22 C -0.11 -1.48 9.92 -40.04 -0.40 -1.88 16 23 C -0.08 -1.10 9.96 -39.38 -0.39 -1.49 16 24 C 0.12 1.87 6.60 -84.88 -0.56 1.31 16 25 N -0.48 -7.31 10.34 -10.99 -0.11 -7.42 16 26 C 0.13 1.58 11.15 -17.47 -0.19 1.39 16 27 C -0.19 -2.40 10.03 -39.74 -0.40 -2.79 16 28 C -0.06 -0.90 9.29 -39.31 -0.37 -1.26 16 29 C -0.07 -1.14 5.76 -106.53 -0.61 -1.75 16 30 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 1.87 6.54 -51.93 -0.34 1.53 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.36 7.38 -51.93 -0.38 0.98 16 41 H 0.42 7.97 5.49 -40.82 -0.22 7.74 16 42 H 0.14 2.36 6.41 -52.49 -0.34 2.03 16 43 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 46 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.18 3.01 4.95 -52.51 -0.26 2.75 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -27.92 371.32 -10.96 -38.88 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.50 Total: 10.93 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -4.90 Total: -3.73 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.20 Total: -55.92 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.07 Total: -11.22 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.92 -10.96 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024581908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.734 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds