Wall clock time and date at job start Sat Apr 11 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47304 * 299.99835 * 3 2 1 6 6 H 1.48495 * 109.47443 * 59.99669 * 3 2 1 7 7 C 1.38812 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99963 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00059 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.46842 * 32.36084 * 10 9 7 12 12 C 1.56005 * 110.52315 * 269.57092 * 10 9 7 13 13 C 1.56340 * 105.76509 * 248.33155 * 12 10 9 14 14 C 1.51557 * 101.81375 * 25.43442 * 13 12 10 15 15 H 1.09011 * 111.53499 * 71.63370 * 14 13 12 16 16 C 1.51519 * 123.34955 * 207.97583 * 14 13 12 17 17 N 1.49621 * 102.49919 * 151.64458 * 16 14 13 18 18 C 1.34773 * 126.07654 * 154.32968 * 17 16 14 19 19 O 1.21776 * 119.99792 * 355.84339 * 18 17 16 20 20 C 1.46212 * 120.00278 * 175.84092 * 18 17 16 21 21 C 1.41737 * 126.79468 * 6.29663 * 20 18 17 22 22 C 1.34521 * 107.77301 * 179.83016 * 21 20 18 23 23 N 1.36950 * 109.60197 * 0.44486 * 22 21 20 24 24 C 1.36709 * 131.34816 * 179.71477 * 23 22 21 25 25 C 1.34993 * 120.75524 * 179.97438 * 24 23 22 26 26 C 1.40309 * 120.38260 * 359.97438 * 25 24 23 27 27 C 1.36340 * 119.45468 * 0.05696 * 26 25 24 28 28 C 1.36943 * 108.74461 * 359.71740 * 23 22 21 29 29 C 1.48102 * 107.63181 * 335.16966 * 17 16 14 30 30 C 1.49704 * 110.52649 * 154.99741 * 10 9 7 31 31 H 1.08994 * 108.54667 * 196.59885 * 30 10 9 32 32 H 0.96992 * 120.00176 * 0.02562 * 1 2 3 33 33 H 0.97000 * 120.00516 * 359.97438 * 9 7 2 34 34 H 1.08997 * 110.19198 * 7.40878 * 12 10 9 35 35 H 1.08998 * 110.19089 * 129.26297 * 12 10 9 36 36 H 1.09000 * 110.96287 * 267.30591 * 13 12 10 37 37 H 1.09003 * 110.99073 * 143.58061 * 13 12 10 38 38 H 1.09004 * 110.80595 * 269.89490 * 16 14 13 39 39 H 1.09006 * 110.80334 * 33.19639 * 16 14 13 40 40 H 1.08003 * 126.11662 * 0.02562 * 21 20 18 41 41 H 1.07999 * 125.19771 * 180.16939 * 22 21 20 42 42 H 1.08004 * 119.62186 * 0.02821 * 24 23 22 43 43 H 1.08001 * 119.81521 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.27747 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.34218 * 179.97438 * 27 26 25 46 46 H 1.08996 * 109.84393 * 233.46828 * 29 17 16 47 47 H 1.09002 * 110.37522 * 111.45547 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9958 -3.5556 0.5472 12 6 2.3221 -4.1359 -1.4605 13 6 1.4444 -5.4154 -1.6530 14 6 0.3401 -5.1894 -0.6400 15 1 -0.3367 -4.3955 -0.9562 16 6 -0.4170 -6.3167 0.0324 17 7 -0.8095 -5.7076 1.3414 18 6 -1.8649 -6.0662 2.0989 19 8 -2.6441 -6.9111 1.6965 20 6 -2.0744 -5.4410 3.4039 21 6 -1.3378 -4.3638 3.9571 22 6 -1.8539 -4.0933 5.1696 23 7 -2.8865 -4.9539 5.4318 24 6 -3.7066 -5.0760 6.5188 25 6 -4.6737 -6.0172 6.5516 26 6 -4.8536 -6.8880 5.4662 27 6 -4.0421 -6.7773 4.3762 28 6 -3.0425 -5.7933 4.3611 29 6 0.1587 -4.6279 1.6421 30 6 1.2201 -4.7467 0.5931 31 1 1.8704 -5.5825 0.8511 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0005 34 1 2.0227 -3.3641 -2.1694 35 1 3.3763 -4.3798 -1.5917 36 1 2.0112 -6.3161 -1.4175 37 1 1.0416 -5.4639 -2.6647 38 1 -1.2987 -6.5905 -0.5470 39 1 0.2294 -7.1815 0.1827 40 1 -0.5121 -3.8497 3.4878 41 1 -1.5043 -3.3190 5.8364 42 1 -3.5798 -4.4113 7.3605 43 1 -5.3128 -6.1005 7.4182 44 1 -5.6282 -7.6401 5.4941 45 1 -4.1676 -7.4404 3.5330 46 1 0.5856 -4.7794 2.6335 47 1 -0.3277 -3.6543 1.5817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026308542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:23 Heat of formation + Delta-G solvation = 83.424106 kcal Electronic energy + Delta-G solvation = -29455.446266 eV Core-core repulsion = 25605.296036 eV Total energy + Delta-G solvation = -3850.150231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.32828 -40.37083 -38.21979 -36.65412 -35.08993 -33.38693 -33.00295 -30.95250 -30.15018 -29.30148 -28.70541 -27.62815 -25.51330 -23.94394 -23.73794 -23.19245 -22.02206 -21.32625 -19.92454 -19.18764 -18.73983 -17.67329 -17.30422 -16.59210 -16.13540 -15.83074 -15.62583 -15.52244 -14.92721 -14.61383 -14.44415 -14.32669 -14.11098 -13.65265 -13.47105 -13.36130 -12.80872 -12.76507 -12.36727 -12.14454 -11.98605 -11.76781 -11.75325 -11.46035 -11.37610 -11.09317 -10.86364 -10.80762 -10.60867 -10.43840 -10.41299 -10.21243 -10.05379 -9.68065 -9.57778 -9.44820 -8.92243 -8.72633 -8.34794 -7.40686 -6.97355 -5.77869 -3.06823 0.63060 1.12306 2.41464 2.53593 3.23513 3.25479 3.41876 3.48157 3.50101 3.84048 4.29807 4.34148 4.58198 4.65793 4.66416 4.82834 4.97405 5.08804 5.11578 5.17945 5.34097 5.42973 5.54344 5.57364 5.60765 5.66385 5.69221 5.75815 5.79934 5.89240 5.92236 5.97042 6.04495 6.06610 6.17603 6.21726 6.24006 6.31364 6.37191 6.45566 6.53005 6.58576 6.70568 6.72371 6.80933 6.85337 7.08146 7.14007 7.70734 7.86600 8.40262 8.54601 9.51896 10.08838 10.43730 11.44325 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.003366 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.545924 B = 8317.224456 C =10226.371506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.197 3.803 11 H 0.057 0.943 12 C -0.145 4.145 13 C -0.098 4.098 14 C -0.125 4.125 15 H 0.092 0.908 16 C 0.127 3.873 17 N -0.617 5.617 18 C 0.610 3.390 19 O -0.564 6.564 20 C -0.233 4.233 21 C -0.108 4.108 22 C -0.066 4.066 23 N -0.339 5.339 24 C 0.049 3.951 25 C -0.147 4.147 26 C -0.123 4.123 27 C -0.078 4.078 28 C 0.107 3.893 29 C 0.121 3.879 30 C -0.123 4.123 31 H 0.069 0.931 32 H 0.254 0.746 33 H 0.384 0.616 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.170 0.830 41 H 0.174 0.826 42 H 0.163 0.837 43 H 0.146 0.854 44 H 0.136 0.864 45 H 0.154 0.846 46 H 0.072 0.928 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -13.833 11.270 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.086 3.914 11 H 0.075 0.925 12 C -0.186 4.186 13 C -0.137 4.137 14 C -0.144 4.144 15 H 0.111 0.889 16 C 0.005 3.995 17 N -0.350 5.350 18 C 0.402 3.598 19 O -0.446 6.446 20 C -0.242 4.242 21 C -0.129 4.129 22 C -0.190 4.190 23 N -0.003 5.003 24 C -0.073 4.073 25 C -0.167 4.167 26 C -0.144 4.144 27 C -0.097 4.097 28 C -0.002 4.002 29 C -0.001 4.001 30 C -0.143 4.143 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.219 0.781 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.187 0.813 41 H 0.191 0.809 42 H 0.180 0.820 43 H 0.163 0.837 44 H 0.154 0.846 45 H 0.172 0.828 46 H 0.090 0.910 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.121 -14.048 11.369 18.783 hybrid contribution 0.164 1.187 0.070 1.200 sum -4.957 -12.861 11.439 17.912 Atomic orbital electron populations 1.69664 1.05040 1.25522 1.57666 1.24722 0.95448 0.97589 1.03035 0.86171 0.78815 0.84378 0.77131 1.20597 1.21994 1.21978 1.19289 0.91028 0.84077 1.42585 0.91097 1.42451 1.05727 0.99574 1.88185 1.20029 0.93921 0.85206 0.92268 0.92507 1.23856 0.97911 0.96194 1.00619 1.21811 0.95644 0.98463 0.97738 1.22648 0.97130 0.98371 0.96292 0.88938 1.21605 0.99001 0.95204 0.83673 1.49197 1.27641 1.36145 1.21997 1.16590 0.79200 0.81155 0.82812 1.90737 1.45007 1.35158 1.73683 1.19274 1.03261 1.05111 0.96582 1.21812 1.00363 0.96792 0.93899 1.21813 0.94761 1.01243 1.01225 1.41576 1.22720 1.23593 1.12382 1.21688 0.93300 1.01467 0.90814 1.20742 0.98900 0.96461 1.00584 1.21090 1.00158 0.99963 0.93232 1.20866 0.92695 0.96546 0.99570 1.18593 0.98814 0.94630 0.88146 1.21131 0.89832 0.91216 0.97951 1.22084 0.96524 1.00800 0.94921 0.91239 0.93583 0.78110 0.90632 0.92904 0.92015 0.92121 0.90615 0.91511 0.81333 0.80853 0.82014 0.83666 0.84638 0.82848 0.91015 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.25 9.96 -15.06 -0.15 -6.40 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -16.63 4.86 -53.44 -0.26 -16.89 16 10 C 0.20 3.60 3.47 -67.95 -0.24 3.36 16 11 H 0.06 1.05 8.09 -51.92 -0.42 0.63 16 12 C -0.14 -2.37 6.74 -23.33 -0.16 -2.53 16 13 C -0.10 -1.36 6.62 -25.67 -0.17 -1.53 16 14 C -0.13 -1.91 3.05 -89.45 -0.27 -2.19 16 15 H 0.09 1.67 7.88 -51.92 -0.41 1.26 16 16 C 0.13 1.90 6.72 -3.05 -0.02 1.88 16 17 N -0.62 -10.19 3.40 -174.29 -0.59 -10.79 16 18 C 0.61 11.01 7.82 -13.06 -0.10 10.91 16 19 O -0.56 -11.29 16.00 5.12 0.08 -11.20 16 20 C -0.23 -3.83 6.16 -104.46 -0.64 -4.47 16 21 C -0.11 -1.58 9.26 -39.56 -0.37 -1.95 16 22 C -0.07 -0.83 11.53 -16.58 -0.19 -1.02 16 23 N -0.34 -4.27 2.92 -60.81 -0.18 -4.45 16 24 C 0.05 0.45 10.89 -16.53 -0.18 0.27 16 25 C -0.15 -1.19 9.98 -39.96 -0.40 -1.59 16 26 C -0.12 -1.18 10.09 -39.49 -0.40 -1.58 16 27 C -0.08 -1.01 9.72 -39.50 -0.38 -1.40 16 28 C 0.11 1.60 6.70 -83.92 -0.56 1.04 16 29 C 0.12 1.92 4.64 -4.79 -0.02 1.90 16 30 C -0.12 -1.93 2.32 -91.24 -0.21 -2.14 16 31 H 0.07 0.98 7.99 -51.93 -0.42 0.57 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.38 9.60 6.67 -40.82 -0.27 9.33 16 34 H 0.07 1.43 7.98 -51.93 -0.41 1.02 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.17 2.43 4.65 -52.48 -0.24 2.18 16 41 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.15 2.08 7.09 -52.49 -0.37 1.70 16 46 H 0.07 1.04 6.36 -51.93 -0.33 0.71 16 47 H 0.09 1.57 6.59 -51.93 -0.34 1.23 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -32.44 374.55 -10.73 -43.17 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.57 Total: 12.10 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -4.56 Total: -7.86 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.31 Total: -58.56 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.44 -10.73 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026308542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.590 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds