Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99836 * 2 1 4 4 H 1.48495 * 109.47039 * 269.99717 * 3 2 1 5 5 H 1.48498 * 109.46961 * 29.99628 * 3 2 1 6 6 H 1.48491 * 109.46960 * 149.99845 * 3 2 1 7 7 C 1.38811 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99940 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99924 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00012 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.90400 * 328.50082 * 10 9 7 12 12 C 1.53720 * 109.91474 * 207.20580 * 10 9 7 13 13 C 1.54108 * 106.67150 * 241.52898 * 12 10 9 14 14 C 1.54453 * 104.73127 * 336.58999 * 13 12 10 15 15 H 1.09005 * 113.73686 * 272.41287 * 14 13 12 16 16 C 1.54888 * 108.83599 * 143.49811 * 14 13 12 17 17 N 1.47361 * 105.01428 * 288.82688 * 16 14 13 18 18 C 1.34770 * 125.70400 * 155.08764 * 17 16 14 19 19 O 1.21782 * 120.00274 * 4.18860 * 18 17 16 20 20 C 1.46214 * 119.99979 * 184.19202 * 18 17 16 21 21 C 1.41737 * 126.79862 * 354.17250 * 20 18 17 22 22 C 1.34517 * 107.77713 * 180.02562 * 21 20 18 23 23 N 1.36953 * 109.60109 * 0.02562 * 22 21 20 24 24 C 1.36712 * 131.35020 * 180.02562 * 23 22 21 25 25 C 1.35002 * 120.75283 * 179.97438 * 24 23 22 26 26 C 1.40301 * 120.38333 * 359.95071 * 25 24 23 27 27 C 1.36345 * 119.45613 * 0.02635 * 26 25 24 28 28 C 1.36942 * 108.74094 * 359.97438 * 23 22 21 29 29 C 1.47032 * 108.59223 * 334.82976 * 17 16 14 30 30 C 1.53908 * 109.91382 * 89.59196 * 10 9 7 31 31 H 1.09006 * 112.92092 * 265.09118 * 30 10 9 32 32 H 0.96999 * 120.00342 * 0.02562 * 1 2 3 33 33 H 0.97002 * 120.00073 * 359.97438 * 9 7 2 34 34 H 1.09000 * 110.01937 * 0.83021 * 12 10 9 35 35 H 1.08996 * 110.01784 * 122.17573 * 12 10 9 36 36 H 1.09000 * 110.38377 * 95.40744 * 13 12 10 37 37 H 1.09001 * 110.38162 * 217.77891 * 13 12 10 38 38 H 1.09000 * 110.45249 * 169.91332 * 16 14 13 39 39 H 1.09005 * 110.28906 * 47.66172 * 16 14 13 40 40 H 1.08000 * 126.11164 * 0.02608 * 21 20 18 41 41 H 1.07997 * 125.19691 * 180.26400 * 22 21 20 42 42 H 1.07996 * 119.62154 * 359.96462 * 24 23 22 43 43 H 1.08004 * 119.80699 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.27533 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.33485 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.83185 * 122.04266 * 29 17 16 47 47 H 1.09001 * 109.82508 * 243.00766 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5407 -3.2292 0.5351 12 6 5.4869 -2.2817 0.6613 13 6 6.5428 -2.6099 -0.4121 14 6 5.8098 -3.5256 -1.4170 15 1 5.8494 -4.5834 -1.1564 16 6 6.3070 -3.1980 -2.8468 17 7 5.7352 -1.8755 -3.1561 18 6 6.2374 -0.9881 -4.0373 19 8 7.2060 -1.2833 -4.7139 20 6 5.6193 0.3292 -4.1811 21 6 4.4293 0.7812 -3.5579 22 6 4.2125 2.0476 -3.9563 23 7 5.2090 2.4372 -4.8111 24 6 5.4249 3.6160 -5.4691 25 6 6.4976 3.7707 -6.2742 26 6 7.4116 2.7207 -6.4481 27 6 7.2082 1.5399 -5.7973 28 6 6.0874 1.3981 -4.9658 29 6 4.5217 -1.6886 -2.3472 30 6 4.3659 -2.9296 -1.4470 31 1 3.6102 -3.6262 -1.8102 32 1 -0.4850 0.8400 -0.0004 33 1 3.8646 -0.3620 0.0004 34 1 5.6019 -1.2503 0.9947 35 1 5.5904 -2.9607 1.5076 36 1 6.8794 -1.6979 -0.9050 37 1 7.3872 -3.1352 0.0342 38 1 5.9444 -3.9421 -3.5560 39 1 7.3959 -3.1536 -2.8674 40 1 3.8077 0.2108 -2.8836 41 1 3.3818 2.6641 -3.6463 42 1 4.7294 4.4326 -5.3436 43 1 6.6531 4.7085 -6.7870 44 1 8.2694 2.8465 -7.0923 45 1 7.9026 0.7221 -5.9213 46 1 4.6221 -0.7952 -1.7309 47 1 3.6536 -1.5937 -2.9994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026308547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = 59.437382 kcal Electronic energy + Delta-G solvation = -30445.999755 eV Core-core repulsion = 26594.809382 eV Total energy + Delta-G solvation = -3851.190373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -43.35171 -41.56709 -39.46020 -37.59949 -36.57900 -34.95622 -34.04374 -33.07493 -31.24034 -30.49097 -30.20108 -28.84173 -27.08035 -25.46310 -24.76435 -24.47371 -23.10313 -22.44393 -21.04705 -20.48912 -20.22332 -19.65512 -18.68520 -17.58233 -17.28391 -17.18216 -16.75492 -16.66099 -16.45530 -15.98668 -15.86704 -15.59496 -15.26675 -14.87660 -14.72010 -14.57911 -14.31577 -14.04030 -13.94023 -13.84535 -13.40526 -13.04182 -12.94492 -12.83224 -12.58015 -12.38672 -12.33468 -12.23995 -12.09113 -11.81331 -11.63198 -11.53502 -11.49801 -11.41572 -11.36179 -11.00011 -10.81686 -9.76724 -9.61615 -9.23273 -8.41991 -7.96130 -5.28378 -0.28741 0.17839 1.21992 1.39767 1.41526 1.47364 1.57957 2.15083 2.24982 2.51763 2.64833 3.31314 3.36438 3.50182 3.57603 3.75574 3.78185 3.85301 3.94131 3.98397 4.00481 4.21510 4.26843 4.31308 4.36024 4.42689 4.45851 4.67145 4.70105 4.73293 4.76254 4.79992 4.80304 4.86962 4.98760 5.00351 5.15095 5.17809 5.23228 5.26174 5.28885 5.34936 5.37206 5.48196 5.55920 5.63946 5.80893 5.86349 6.19244 6.27820 6.55970 7.13395 7.23247 7.89924 8.07516 9.25412 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.005175 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.855533 B = 5409.529915 C = 7661.411142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.054 4.054 3 Si 0.931 3.069 4 H -0.257 1.257 5 H -0.305 1.305 6 H -0.265 1.265 7 C -0.220 4.220 8 H 0.062 0.938 9 N -0.744 5.744 10 C 0.177 3.823 11 H 0.060 0.940 12 C -0.124 4.124 13 C -0.108 4.108 14 C -0.085 4.085 15 H 0.137 0.863 16 C 0.112 3.888 17 N -0.612 5.612 18 C 0.601 3.399 19 O -0.593 6.593 20 C -0.283 4.283 21 C -0.125 4.125 22 C -0.075 4.075 23 N -0.338 5.338 24 C 0.040 3.960 25 C -0.137 4.137 26 C -0.088 4.088 27 C -0.122 4.122 28 C 0.106 3.894 29 C 0.127 3.873 30 C -0.117 4.117 31 H 0.087 0.913 32 H 0.255 0.745 33 H 0.362 0.638 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.153 0.847 41 H 0.187 0.813 42 H 0.198 0.802 43 H 0.195 0.805 44 H 0.173 0.827 45 H 0.140 0.860 46 H 0.069 0.931 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.698 4.339 -10.169 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.246 4.246 3 Si 0.759 3.241 4 H -0.182 1.182 5 H -0.232 1.232 6 H -0.190 1.190 7 C -0.351 4.351 8 H 0.080 0.920 9 N -0.387 5.387 10 C 0.069 3.931 11 H 0.078 0.922 12 C -0.163 4.163 13 C -0.146 4.146 14 C -0.104 4.104 15 H 0.155 0.845 16 C -0.010 4.010 17 N -0.343 5.343 18 C 0.395 3.605 19 O -0.478 6.478 20 C -0.292 4.292 21 C -0.147 4.147 22 C -0.199 4.199 23 N -0.001 5.001 24 C -0.080 4.080 25 C -0.156 4.156 26 C -0.109 4.109 27 C -0.140 4.140 28 C -0.005 4.005 29 C 0.004 3.996 30 C -0.139 4.139 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.196 0.804 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.170 0.830 41 H 0.204 0.796 42 H 0.215 0.785 43 H 0.212 0.788 44 H 0.190 0.810 45 H 0.158 0.842 46 H 0.087 0.913 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.888 4.396 -10.556 20.396 hybrid contribution -0.611 1.017 0.290 1.221 sum 16.278 5.414 -10.266 19.992 Atomic orbital electron populations 1.69865 1.07000 1.26266 1.60228 1.25294 0.95741 1.00426 1.03113 0.85782 0.78156 0.80960 0.79202 1.18228 1.23224 1.19010 1.19042 0.82435 0.93366 1.40252 0.91998 1.43027 1.02518 1.03581 1.89597 1.20971 0.92078 0.87368 0.92715 0.92211 1.22366 0.93519 1.01626 0.98747 1.22202 0.97948 0.98725 0.95701 1.23281 0.93089 1.01319 0.92735 0.84524 1.22276 0.98842 0.83304 0.96552 1.48305 1.27616 1.17767 1.40638 1.16831 0.82155 0.83111 0.78385 1.90680 1.29793 1.79967 1.47325 1.19313 1.02546 0.95510 1.11833 1.21789 0.96855 0.95495 1.00512 1.21985 0.97403 0.98293 1.02267 1.41769 1.17748 1.10739 1.29882 1.22606 1.01780 0.87672 0.95963 1.21365 0.93026 1.02050 0.99196 1.21641 1.00273 0.91191 0.97811 1.20866 0.95646 1.00572 0.96957 1.18871 0.93473 0.87930 1.00254 1.22088 0.85187 0.99958 0.92336 1.23472 0.97572 0.95515 0.97354 0.89455 0.93620 0.80437 0.92916 0.89402 0.93695 0.89091 0.91184 0.90611 0.83002 0.79558 0.78521 0.78839 0.80985 0.84176 0.91315 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.97 13.97 21.65 0.30 -60.66 16 2 C -0.05 -3.05 5.50 84.86 0.47 -2.59 16 3 Si 0.93 43.38 27.74 68.60 1.90 45.28 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 6 H -0.26 -11.60 6.52 99.48 0.65 -10.95 16 7 C -0.22 -11.73 10.43 84.03 0.88 -10.85 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 9 N -0.74 -32.19 3.44 -320.35 -1.10 -33.29 16 10 C 0.18 6.08 3.27 45.54 0.15 6.23 16 11 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 12 C -0.12 -3.45 6.55 31.21 0.20 -3.24 16 13 C -0.11 -2.63 5.86 31.46 0.18 -2.45 16 14 C -0.09 -2.03 4.27 -8.53 -0.04 -2.07 16 15 H 0.14 2.40 8.14 -2.38 -0.02 2.38 16 16 C 0.11 3.11 6.15 86.86 0.53 3.64 16 17 N -0.61 -21.05 2.83 -817.59 -2.31 -23.36 16 18 C 0.60 23.23 7.80 86.32 0.67 23.90 16 19 O -0.59 -24.63 15.96 -4.61 -0.07 -24.70 16 20 C -0.28 -10.54 6.15 -19.76 -0.12 -10.66 16 21 C -0.13 -4.60 9.19 22.28 0.20 -4.40 16 22 C -0.08 -2.38 11.53 83.04 0.96 -1.42 16 23 N -0.34 -9.35 2.92 -346.31 -1.01 -10.37 16 24 C 0.04 0.71 10.89 83.19 0.91 1.62 16 25 C -0.14 -1.79 9.98 22.03 0.22 -1.57 16 26 C -0.09 -1.47 10.09 22.33 0.23 -1.24 16 27 C -0.12 -3.22 9.72 22.33 0.22 -3.00 16 28 C 0.11 3.42 6.70 39.42 0.26 3.68 16 29 C 0.13 4.51 3.54 86.65 0.31 4.82 16 30 C -0.12 -3.66 3.98 -8.99 -0.04 -3.70 16 31 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.36 15.63 4.56 -92.71 -0.42 15.21 16 34 H 0.05 1.61 7.64 -2.39 -0.02 1.59 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.30 7.30 -2.39 -0.02 1.28 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 2.08 8.04 -2.38 -0.02 2.06 16 40 H 0.15 6.04 4.57 -2.91 -0.01 6.02 16 41 H 0.19 5.14 8.06 -2.91 -0.02 5.12 16 42 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 44 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.14 4.00 7.09 -2.91 -0.02 3.98 16 46 H 0.07 2.65 4.56 -2.39 -0.01 2.64 16 47 H 0.05 1.79 7.16 -2.39 -0.02 1.77 16 Total: -1.00 -75.40 367.47 4.41 -70.99 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: 0.52 Total: 39.43 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 6.19 Total: -3.31 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -4.13 Total: -127.69 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.07 Total: -24.70 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.90 Total: 45.28 kcal Total: -75.40 4.41 -70.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026308547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.426 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds