Wall clock time and date at job start Sat Apr 11 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99588 * 2 1 4 4 H 1.48494 * 109.47627 * 274.99504 * 3 2 1 5 5 H 1.48509 * 109.47174 * 34.99347 * 3 2 1 6 6 H 1.48503 * 109.47108 * 154.98813 * 3 2 1 7 7 C 1.38807 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99474 * 173.58264 * 7 2 1 9 9 N 1.36936 * 120.00494 * 353.58104 * 7 2 1 10 10 C 1.47165 * 135.99537 * 352.95666 * 9 7 2 11 11 C 1.52940 * 87.85923 * 206.92053 * 10 9 7 12 12 C 1.47159 * 136.00246 * 173.32672 * 9 7 2 13 13 C 1.52554 * 114.11098 * 87.94532 * 11 10 9 14 14 C 1.53359 * 109.12860 * 190.31936 * 13 11 10 15 15 N 1.46883 * 108.74945 * 307.76001 * 14 13 11 16 16 C 1.34781 * 120.46409 * 235.64520 * 15 14 13 17 17 O 1.21585 * 119.99783 * 184.05481 * 16 15 14 18 18 C 1.47578 * 119.99763 * 4.05883 * 16 15 14 19 19 C 1.40236 * 119.83173 * 317.28072 * 18 16 15 20 20 C 1.36202 * 120.37642 * 179.77168 * 19 18 16 21 21 C 1.39913 * 119.96468 * 0.49196 * 20 19 18 22 22 C 1.46250 * 133.84389 * 179.79203 * 21 20 19 23 23 C 1.34459 * 107.03261 * 179.97438 * 22 21 20 24 24 N 1.36563 * 109.97845 * 0.02562 * 23 22 21 25 25 H 0.96998 * 125.06784 * 180.02562 * 24 23 22 26 26 C 1.37820 * 109.85774 * 359.97438 * 24 23 22 27 27 C 1.38688 * 133.37270 * 180.02562 * 26 24 23 28 28 C 1.46897 * 119.07416 * 55.62627 * 15 14 13 29 29 C 1.52555 * 114.12344 * 220.61895 * 11 10 9 30 30 H 0.96992 * 120.00677 * 359.97438 * 1 2 3 31 31 H 1.08998 * 113.49272 * 321.66831 * 10 9 7 32 32 H 1.09008 * 113.48888 * 92.17514 * 10 9 7 33 33 H 1.09005 * 113.48219 * 267.82436 * 12 9 7 34 34 H 1.09001 * 113.48744 * 38.33176 * 12 9 7 35 35 H 1.08994 * 109.53200 * 310.21686 * 13 11 10 36 36 H 1.09005 * 109.52783 * 70.42868 * 13 11 10 37 37 H 1.09002 * 109.58910 * 187.98538 * 14 13 11 38 38 H 1.08999 * 109.58845 * 67.54356 * 14 13 11 39 39 H 1.07994 * 119.81500 * 0.02562 * 19 18 16 40 40 H 1.08002 * 120.02073 * 180.25353 * 20 19 18 41 41 H 1.08001 * 126.48489 * 359.97408 * 22 21 20 42 42 H 1.07997 * 125.00837 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.16320 * 359.97438 * 27 26 24 44 44 H 1.09001 * 109.58671 * 184.58664 * 28 15 14 45 45 H 1.08998 * 109.59028 * 64.14415 * 28 15 14 46 46 H 1.08994 * 109.52507 * 289.57089 * 29 11 10 47 47 H 1.09000 * 109.52621 * 49.70917 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5042 2.6200 0.8030 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0853 -1.2049 -0.1051 9 7 1.3322 -2.3844 0.1315 10 6 -0.0559 -2.7826 0.4151 11 6 0.4971 -4.0835 0.9990 12 6 1.6730 -3.8141 0.0586 13 6 0.8533 -3.9999 2.4801 14 6 1.6272 -5.2612 2.8827 15 7 0.8580 -6.4406 2.4648 16 6 0.5154 -7.3862 3.3620 17 8 -0.0568 -8.3941 2.9946 18 6 0.8348 -7.1981 4.7905 19 6 2.0878 -6.6912 5.1643 20 6 2.3926 -6.5088 6.4792 21 6 1.4565 -6.8376 7.4657 22 6 1.4594 -6.7733 8.9268 23 6 0.2649 -7.2287 9.3435 24 7 -0.5014 -7.5795 8.2689 25 1 -1.4028 -7.9343 8.3193 26 6 0.1965 -7.3531 7.1023 27 6 -0.1072 -7.5313 5.7608 28 6 0.4668 -6.5750 1.0552 29 6 -0.3157 -5.3234 0.6395 30 1 -0.4851 0.8399 0.0004 31 1 -0.5474 -2.1493 1.1537 32 1 -0.6575 -2.9302 -0.4819 33 1 1.5411 -4.2419 -0.9353 34 1 2.6426 -4.0525 0.4958 35 1 1.4725 -3.1206 2.6569 36 1 -0.0599 -3.9286 3.0710 37 1 1.7622 -5.2774 3.9642 38 1 2.5998 -5.2659 2.3907 39 1 2.8136 -6.4401 4.4051 40 1 3.3578 -6.1141 6.7604 41 1 2.2681 -6.4258 9.5526 42 1 -0.0431 -7.3057 10.3757 43 1 -1.0696 -7.9259 5.4701 44 1 -0.1622 -7.4568 0.9330 45 1 1.3587 -6.6710 0.4360 46 1 -1.2699 -5.2987 1.1657 47 1 -0.4929 -5.3437 -0.4358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035803893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:44 Heat of formation + Delta-G solvation = 98.069317 kcal Electronic energy + Delta-G solvation = -29264.475561 eV Core-core repulsion = 25414.960394 eV Total energy + Delta-G solvation = -3849.515167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53836 -40.36381 -38.86104 -36.79548 -35.76567 -32.56298 -32.21264 -31.35990 -30.35863 -29.60318 -29.10980 -26.88723 -24.94620 -24.24197 -23.58989 -22.72971 -22.33703 -21.09480 -20.97530 -19.65408 -18.49611 -17.55224 -16.94868 -16.65660 -16.15146 -15.81600 -15.19837 -14.87837 -14.70243 -14.61941 -14.53756 -14.18982 -14.01210 -13.77180 -13.56589 -13.41028 -13.20826 -12.96577 -12.62066 -12.23949 -12.15993 -11.98192 -11.67753 -11.60021 -11.25848 -11.10919 -10.91016 -10.85599 -10.80605 -10.37166 -10.23380 -9.99012 -9.75408 -9.68220 -9.57579 -9.17616 -8.75456 -8.47124 -8.32868 -7.97723 -6.84569 -5.76937 -3.07231 0.70126 1.28918 2.35874 2.69243 2.92950 3.16899 3.39020 3.44254 3.46398 3.72374 4.42198 4.47072 4.53407 4.58275 4.88388 5.02797 5.05364 5.11160 5.15244 5.20224 5.31639 5.39102 5.39711 5.47066 5.53974 5.66429 5.68082 5.72248 5.77957 5.88182 5.92349 6.03702 6.12960 6.20858 6.27674 6.31594 6.38116 6.38943 6.47948 6.55135 6.62608 6.68180 6.83655 6.85116 6.87010 7.20422 7.22658 7.37612 7.51433 7.55418 7.98482 8.22033 9.05006 9.71818 10.68269 11.41800 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.002822 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.121727 B = 9918.595373 C =11159.845904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.217 4.217 8 H 0.080 0.920 9 N -0.607 5.607 10 C 0.174 3.826 11 C -0.116 4.116 12 C 0.126 3.874 13 C -0.094 4.094 14 C 0.087 3.913 15 N -0.595 5.595 16 C 0.561 3.439 17 O -0.548 6.548 18 C -0.105 4.105 19 C -0.120 4.120 20 C -0.077 4.077 21 C -0.091 4.091 22 C -0.209 4.209 23 C 0.056 3.944 24 N -0.593 5.593 25 H 0.417 0.583 26 C 0.084 3.916 27 C -0.070 4.070 28 C 0.115 3.885 29 C -0.113 4.113 30 H 0.253 0.747 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.148 0.852 42 H 0.171 0.829 43 H 0.128 0.872 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 -16.253 16.970 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.333 5.333 10 C 0.048 3.952 11 C -0.118 4.118 12 C 0.000 4.000 13 C -0.132 4.132 14 C -0.035 4.035 15 N -0.327 5.327 16 C 0.350 3.650 17 O -0.427 6.427 18 C -0.109 4.109 19 C -0.139 4.139 20 C -0.096 4.096 21 C -0.096 4.096 22 C -0.234 4.234 23 C -0.071 4.071 24 N -0.195 5.195 25 H 0.253 0.747 26 C -0.022 4.022 27 C -0.091 4.091 28 C -0.007 4.007 29 C -0.152 4.152 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.166 0.834 42 H 0.188 0.812 43 H 0.146 0.854 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.440 -16.432 16.756 23.473 hybrid contribution -0.078 0.970 -0.193 0.992 sum 0.361 -15.462 16.563 22.661 Atomic orbital electron populations 1.69852 1.05024 1.25306 1.56374 1.24809 0.95615 0.97545 1.02469 0.86143 0.78730 0.83661 0.77480 1.21714 1.21655 1.20524 1.18923 0.90315 0.81649 1.43534 0.90255 1.45652 1.05882 0.99230 1.82512 1.21912 0.88368 0.88700 0.96233 1.22090 0.98778 0.95785 0.95101 1.22401 0.95334 0.86906 0.95333 1.21424 1.00317 0.96963 0.94541 1.22491 0.94768 0.84620 1.01626 1.48000 1.54224 1.21583 1.08888 1.18219 0.78501 0.82923 0.85375 1.90757 1.43106 1.28307 1.80528 1.19459 0.95458 1.03352 0.92617 1.20901 0.96236 1.00250 0.96527 1.20203 0.98643 0.99507 0.91203 1.19369 0.93742 1.02728 0.93772 1.21740 0.98689 1.10516 0.92434 1.21876 0.91998 1.01147 0.92107 1.41767 1.16369 1.57236 1.04171 0.74652 1.18052 0.93047 1.03664 0.87470 1.19922 0.99934 1.00887 0.88400 1.21647 0.99670 0.99199 0.80152 1.21726 0.98537 0.93642 1.01322 0.93711 0.92450 0.95464 0.95287 0.94534 0.89386 0.92146 0.88075 0.90954 0.84527 0.85277 0.83430 0.81154 0.85430 0.89417 0.91324 0.91872 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 11.84 55.49 0.66 -26.63 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.99 29.56 -169.99 -5.02 16.96 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.22 -6.00 10.73 -15.06 -0.16 -6.16 16 8 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 9 N -0.61 -15.23 3.53 -184.66 -0.65 -15.88 16 10 C 0.17 4.01 6.36 -8.21 -0.05 3.96 16 11 C -0.12 -2.06 0.84 -155.02 -0.13 -2.19 16 12 C 0.13 2.51 7.63 -8.21 -0.06 2.44 16 13 C -0.09 -1.53 5.27 -26.77 -0.14 -1.68 16 14 C 0.09 1.15 5.05 -3.65 -0.02 1.13 16 15 N -0.60 -8.38 2.94 -173.84 -0.51 -8.89 16 16 C 0.56 8.41 7.30 -12.45 -0.09 8.32 16 17 O -0.55 -9.74 16.34 5.29 0.09 -9.66 16 18 C -0.10 -1.36 5.30 -104.95 -0.56 -1.91 16 19 C -0.12 -1.34 7.23 -39.56 -0.29 -1.62 16 20 C -0.08 -0.80 10.03 -39.69 -0.40 -1.19 16 21 C -0.09 -0.99 6.37 -105.05 -0.67 -1.66 16 22 C -0.21 -1.77 11.08 -37.70 -0.42 -2.19 16 23 C 0.06 0.38 11.81 -16.78 -0.20 0.18 16 24 N -0.59 -4.61 6.07 -10.68 -0.06 -4.67 16 25 H 0.42 2.06 8.96 -40.82 -0.37 1.70 16 26 C 0.08 0.92 7.26 -84.00 -0.61 0.31 16 27 C -0.07 -0.85 9.66 -39.03 -0.38 -1.23 16 28 C 0.12 1.61 6.34 -3.64 -0.02 1.58 16 29 C -0.11 -1.71 5.30 -26.78 -0.14 -1.85 16 30 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 31 H 0.06 1.47 7.59 -51.93 -0.39 1.07 16 32 H 0.03 0.66 8.10 -51.92 -0.42 0.24 16 33 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.04 0.68 7.53 -51.93 -0.39 0.29 16 35 H 0.09 1.62 7.95 -51.93 -0.41 1.21 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.20 3.86 -51.93 -0.20 1.00 16 38 H 0.07 0.91 7.60 -51.93 -0.39 0.52 16 39 H 0.14 1.35 6.21 -52.49 -0.33 1.02 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.09 1.25 6.99 -51.93 -0.36 0.89 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -34.43 374.42 -10.91 -45.34 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.61 Total: 1.86 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -4.43 Total: -4.07 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.57 Total: -56.08 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.43 -10.91 -45.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035803893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.410 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds