Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99750 * 2 1 4 4 H 1.48503 * 109.47042 * 240.00152 * 3 2 1 5 5 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47198 * 120.00132 * 3 2 1 7 7 C 1.38814 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99286 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.47166 * 135.99909 * 179.97438 * 9 7 2 11 11 C 1.52963 * 87.85503 * 153.33407 * 10 9 7 12 12 C 1.47164 * 136.00386 * 359.97438 * 9 7 2 13 13 C 1.52546 * 114.07543 * 272.00905 * 11 10 9 14 14 C 1.53351 * 109.12924 * 284.44994 * 13 11 10 15 15 N 1.46880 * 108.74857 * 307.75391 * 14 13 11 16 16 C 1.34783 * 120.46630 * 235.60521 * 15 14 13 17 17 O 1.21586 * 120.00119 * 173.62733 * 16 15 14 18 18 C 1.47501 * 119.99728 * 353.62653 * 16 15 14 19 19 C 1.41205 * 126.37048 * 329.77256 * 18 16 15 20 20 C 1.37994 * 106.86247 * 179.84051 * 19 18 16 21 21 C 1.41380 * 131.98744 * 180.11167 * 20 19 18 22 22 C 1.35737 * 119.33393 * 180.34358 * 21 20 19 23 23 C 1.40824 * 119.72304 * 0.02562 * 22 21 20 24 24 C 1.34539 * 120.58015 * 359.97438 * 23 22 21 25 25 N 1.37434 * 120.74452 * 0.02562 * 24 23 22 26 26 C 1.35129 * 131.28643 * 179.97438 * 25 24 23 27 27 C 1.46891 * 119.07437 * 55.63028 * 15 14 13 28 28 C 1.52549 * 114.06120 * 139.43564 * 11 10 9 29 29 H 0.96994 * 120.00184 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.48997 * 268.08703 * 10 9 7 31 31 H 1.09004 * 113.48865 * 38.58934 * 10 9 7 32 32 H 1.09001 * 113.48506 * 321.41617 * 12 9 7 33 33 H 1.08995 * 113.48666 * 91.91666 * 12 9 7 34 34 H 1.09005 * 109.52874 * 44.34221 * 13 11 10 35 35 H 1.09000 * 109.53077 * 164.54717 * 13 11 10 36 36 H 1.09006 * 109.59027 * 187.97427 * 14 13 11 37 37 H 1.09000 * 109.59352 * 67.53952 * 14 13 11 38 38 H 1.07995 * 126.56348 * 359.97438 * 19 18 16 39 39 H 1.07998 * 120.33646 * 0.36368 * 21 20 19 40 40 H 1.08003 * 120.14053 * 180.02562 * 22 21 20 41 41 H 1.07995 * 119.71103 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.62556 * 180.02562 * 24 23 22 43 43 H 1.08006 * 125.61243 * 359.97438 * 26 25 24 44 44 H 1.08999 * 109.59514 * 184.58555 * 27 15 14 45 45 H 1.08998 * 109.59502 * 64.14112 * 27 15 14 46 46 H 1.09006 * 109.53245 * 195.44260 * 28 11 10 47 47 H 1.09003 * 109.53184 * 315.58195 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.6816 -3.8160 0.0005 11 6 0.3424 -4.0909 0.6865 12 6 -0.0890 -2.7938 0.0005 13 6 0.3934 -4.0039 2.2087 14 6 1.0772 -5.2604 2.7612 15 7 0.4138 -6.4445 2.1999 16 6 -0.0963 -7.3914 3.0121 17 8 -0.7441 -8.3083 2.5452 18 6 0.1314 -7.3154 4.4674 19 6 1.2562 -6.7543 5.1108 20 6 1.0518 -6.8939 6.4684 21 6 1.8327 -6.5192 7.5858 22 6 1.3792 -6.7926 8.8357 23 6 0.1418 -7.4439 9.0026 24 6 -0.5953 -7.7972 7.9340 25 7 -0.1569 -7.5309 6.6590 26 6 -0.7122 -7.7859 5.4537 27 6 0.3144 -6.5826 0.7408 28 6 -0.3751 -5.3357 0.1738 29 1 -0.4850 0.8400 0.0004 30 1 1.7543 -4.2456 -0.9986 31 1 2.5449 -4.0485 0.6241 32 1 -0.7220 -2.1624 0.6240 33 1 -0.4974 -2.9457 -0.9986 34 1 0.9600 -3.1209 2.5044 35 1 -0.6201 -3.9369 2.6040 36 1 0.9926 -5.2747 3.8479 37 1 2.1289 -5.2602 2.4745 38 1 2.1114 -6.3007 4.6321 39 1 2.7803 -6.0202 7.4465 40 1 1.9649 -6.5118 9.6985 41 1 -0.2189 -7.6609 9.9971 42 1 -1.5422 -8.2957 8.0799 43 1 -1.6601 -8.2767 5.2892 44 1 -0.2727 -7.4679 0.4966 45 1 1.3129 -6.6742 0.3135 46 1 -1.4158 -5.3158 0.4975 47 1 -0.3328 -5.3581 -0.9152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035808529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = 113.289845 kcal Electronic energy + Delta-G solvation = -29244.645960 eV Core-core repulsion = 25395.790805 eV Total energy + Delta-G solvation = -3848.855155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.45763 -40.14526 -38.64467 -36.63784 -35.67921 -33.44517 -32.46275 -31.29965 -30.33720 -29.87683 -28.02656 -26.92872 -25.00459 -24.54067 -23.48466 -23.23759 -22.24873 -21.84513 -20.89585 -19.34958 -17.93865 -17.42662 -16.72528 -16.65843 -16.52535 -15.83216 -15.60512 -15.16120 -14.88150 -14.77162 -14.61894 -14.51525 -14.19245 -13.76377 -13.47117 -13.24870 -13.13348 -12.68131 -12.32443 -12.26175 -12.07343 -12.04107 -11.88524 -11.57189 -11.53941 -11.03926 -10.98142 -10.81750 -10.75743 -10.68473 -10.36198 -10.15989 -9.71231 -9.67284 -9.53526 -9.14006 -8.78049 -8.74715 -8.26841 -7.60670 -6.82623 -5.73245 -3.05008 0.50438 1.11330 2.04853 2.39196 3.17837 3.22622 3.40513 3.44665 3.46060 3.47442 4.21049 4.46607 4.48404 4.53161 4.63020 4.81338 4.98189 5.07151 5.12027 5.21152 5.26103 5.28767 5.45045 5.45345 5.51967 5.57169 5.64939 5.70745 5.78364 5.84379 5.94870 5.97314 6.01066 6.05637 6.10525 6.26121 6.35857 6.42422 6.47501 6.57902 6.62288 6.68789 6.75183 6.88226 6.92838 6.99849 7.27194 7.41867 7.61136 7.62306 8.01651 8.34789 9.07304 9.74001 10.69996 11.44114 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002857 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.920357 B = 9797.559748 C =11303.634366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.608 5.608 10 C 0.127 3.873 11 C -0.114 4.114 12 C 0.166 3.834 13 C -0.093 4.093 14 C 0.093 3.907 15 N -0.596 5.596 16 C 0.587 3.413 17 O -0.553 6.553 18 C -0.161 4.161 19 C -0.165 4.165 20 C 0.027 3.973 21 C -0.073 4.073 22 C -0.136 4.136 23 C -0.137 4.137 24 C 0.042 3.958 25 N -0.342 5.342 26 C 0.013 3.987 27 C 0.116 3.884 28 C -0.113 4.113 29 H 0.253 0.747 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.159 0.841 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.179 0.821 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 -16.741 16.954 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.334 5.334 10 C 0.001 3.999 11 C -0.116 4.116 12 C 0.040 3.960 13 C -0.132 4.132 14 C -0.029 4.029 15 N -0.327 5.327 16 C 0.376 3.624 17 O -0.433 6.433 18 C -0.168 4.168 19 C -0.189 4.189 20 C -0.077 4.077 21 C -0.092 4.092 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.076 4.076 25 N -0.006 5.006 26 C -0.121 4.121 27 C -0.006 4.006 28 C -0.152 4.152 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.177 0.823 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.178 0.822 43 H 0.196 0.804 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.084 -16.904 16.872 23.884 hybrid contribution 0.426 1.089 -0.195 1.186 sum 0.342 -15.815 16.677 22.986 Atomic orbital electron populations 1.69820 1.04971 1.25331 1.56558 1.24770 0.95636 0.97394 1.02667 0.86229 0.78472 0.83334 0.77894 1.21280 1.21622 1.21100 1.18870 0.90021 0.81595 1.43857 0.90348 1.45575 1.02709 0.99182 1.85893 1.22398 0.94527 0.86705 0.96269 1.22071 0.98636 0.95673 0.95187 1.22039 0.88721 0.89042 0.96153 1.21411 1.00832 0.96984 0.93935 1.22349 0.96430 0.84354 0.99752 1.47888 1.57010 1.21183 1.06657 1.17438 0.78482 0.81660 0.84856 1.90739 1.40638 1.35059 1.76815 1.19539 0.97427 1.06959 0.92897 1.21389 1.00666 1.06631 0.90165 1.18833 0.88509 1.05231 0.95088 1.20696 0.99359 0.98897 0.90261 1.20937 0.96561 1.00724 0.97447 1.20721 0.95669 1.01075 0.98238 1.21667 1.01039 1.03325 0.81590 1.41310 1.15978 1.38105 1.05185 1.21936 1.01391 1.07901 0.80839 1.21625 1.01068 0.99286 0.78610 1.21724 0.99522 0.93709 1.00283 0.93683 0.95271 0.94569 0.91259 0.95954 0.89441 0.92209 0.88286 0.91351 0.82335 0.83825 0.84885 0.83779 0.82173 0.80394 0.89428 0.91470 0.91825 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 11.51 55.49 0.64 -26.65 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.01 10.74 -15.06 -0.16 -6.17 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.61 -15.38 3.55 -184.66 -0.66 -16.03 16 10 C 0.13 2.55 7.63 -8.21 -0.06 2.49 16 11 C -0.11 -2.08 0.84 -155.02 -0.13 -2.21 16 12 C 0.17 3.88 6.54 -8.22 -0.05 3.83 16 13 C -0.09 -1.58 5.27 -26.78 -0.14 -1.72 16 14 C 0.09 1.29 5.20 -3.65 -0.02 1.27 16 15 N -0.60 -8.70 2.94 -173.87 -0.51 -9.21 16 16 C 0.59 9.09 7.61 -12.48 -0.10 8.99 16 17 O -0.55 -10.02 16.42 5.29 0.09 -9.93 16 18 C -0.16 -2.15 5.52 -105.06 -0.58 -2.73 16 19 C -0.16 -1.93 8.50 -38.55 -0.33 -2.25 16 20 C 0.03 0.30 6.70 -84.00 -0.56 -0.27 16 21 C -0.07 -0.62 10.11 -39.28 -0.40 -1.02 16 22 C -0.14 -0.95 10.07 -39.50 -0.40 -1.35 16 23 C -0.14 -0.87 9.97 -39.91 -0.40 -1.27 16 24 C 0.04 0.32 10.89 -16.35 -0.18 0.14 16 25 N -0.34 -3.58 2.92 -60.42 -0.18 -3.76 16 26 C 0.01 0.15 11.49 -16.17 -0.19 -0.04 16 27 C 0.12 1.66 6.35 -3.64 -0.02 1.64 16 28 C -0.11 -1.76 5.30 -26.78 -0.14 -1.90 16 29 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 31 H 0.04 0.69 7.53 -51.93 -0.39 0.30 16 32 H 0.07 1.81 7.11 -51.93 -0.37 1.44 16 33 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.09 1.68 7.95 -51.93 -0.41 1.27 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.25 4.08 -51.93 -0.21 1.04 16 37 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 38 H 0.16 1.63 6.56 -52.49 -0.34 1.29 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.18 1.77 8.06 -52.48 -0.42 1.34 16 44 H 0.09 1.28 6.97 -51.93 -0.36 0.92 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -34.21 375.35 -10.61 -44.82 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.67 Total: 0.96 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.95 Total: -2.89 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.70 Total: -55.65 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.21 -10.61 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035808529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.107 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds