Wall clock time and date at job start Sat Apr 11 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00242 * 2 1 4 4 H 1.48504 * 109.47401 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47222 * 299.99732 * 3 2 1 6 6 H 1.48497 * 109.47376 * 59.99706 * 3 2 1 7 7 C 1.38817 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99653 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.47820 * 125.94346 * 359.91960 * 9 7 2 11 11 C 1.55105 * 104.89004 * 201.58024 * 10 9 7 12 12 C 1.56116 * 101.12074 * 322.99667 * 11 10 9 13 13 H 1.08999 * 112.18898 * 157.72773 * 12 11 10 14 14 C 1.53117 * 106.63859 * 281.13395 * 12 11 10 15 15 N 1.45040 * 110.00974 * 158.89976 * 14 12 11 16 16 C 1.34783 * 120.59343 * 121.70858 * 15 14 12 17 17 O 1.21776 * 119.99711 * 355.10635 * 16 15 14 18 18 C 1.46212 * 120.00024 * 175.10479 * 16 15 14 19 19 C 1.41731 * 126.79790 * 320.50040 * 18 16 15 20 20 C 1.34515 * 107.77587 * 179.82722 * 19 18 16 21 21 N 1.36958 * 109.60233 * 0.44264 * 20 19 18 22 22 C 1.36702 * 131.35124 * 179.74089 * 21 20 19 23 23 C 1.34991 * 120.75719 * 179.97438 * 22 21 20 24 24 C 1.40310 * 120.37907 * 0.02562 * 23 22 21 25 25 C 1.36336 * 119.45638 * 359.97438 * 24 23 22 26 26 C 1.36938 * 108.73895 * 359.71986 * 21 20 19 27 27 C 1.46536 * 118.43132 * 302.26273 * 15 14 12 28 28 C 1.51786 * 110.13213 * 53.19560 * 27 15 14 29 29 C 1.46257 * 125.96061 * 179.97438 * 9 7 2 30 30 H 1.09002 * 105.49980 * 70.57409 * 29 9 7 31 31 H 0.97005 * 119.99625 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.33329 * 82.74871 * 10 9 7 33 33 H 1.08996 * 110.39406 * 320.44687 * 10 9 7 34 34 H 1.08997 * 111.09637 * 205.01699 * 11 10 9 35 35 H 1.09007 * 111.09634 * 80.96497 * 11 10 9 36 36 H 1.09002 * 109.52595 * 279.95270 * 14 12 11 37 37 H 1.08993 * 109.53102 * 40.16480 * 14 12 11 38 38 H 1.08003 * 126.11280 * 359.96254 * 19 18 16 39 39 H 1.08001 * 125.20410 * 180.17964 * 20 19 18 40 40 H 1.08003 * 119.61989 * 359.95628 * 22 21 20 41 41 H 1.07997 * 119.81334 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.27023 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.33954 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.35457 * 292.99490 * 27 15 14 45 45 H 1.08999 * 109.36061 * 173.39937 * 27 15 14 46 46 H 1.08995 * 108.35908 * 196.93777 * 28 27 15 47 47 H 1.09004 * 108.22484 * 79.72924 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1448 -2.5410 0.0039 11 6 -0.3960 -3.9687 0.5556 12 6 0.7952 -4.7515 -0.0810 13 1 1.0309 -5.6619 0.4701 14 6 0.4068 -5.0348 -1.5347 15 7 1.5951 -5.2977 -2.3237 16 6 1.7354 -6.4639 -2.9847 17 8 0.9032 -7.3430 -2.8518 18 6 2.8867 -6.6735 -3.8613 19 6 3.4741 -5.7228 -4.7330 20 6 4.5091 -6.3182 -5.3525 21 7 4.6132 -7.6163 -4.9287 22 6 5.4894 -8.6095 -5.2674 23 6 5.3953 -9.8339 -4.7069 24 6 4.3925 -10.1077 -3.7645 25 6 3.5122 -9.1261 -3.4178 26 6 3.6265 -7.8600 -4.0110 27 6 2.6405 -4.2721 -2.3736 28 6 3.0496 -3.8743 -0.9671 29 6 1.9212 -3.7238 0.0017 30 1 2.3597 -3.8471 0.9920 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5365 -2.4519 -1.0094 33 1 -0.6030 -1.7969 0.6553 34 1 -1.3526 -4.3603 0.2096 35 1 -0.3389 -3.9844 1.6441 36 1 -0.2636 -5.8934 -1.5720 37 1 -0.0933 -4.1622 -1.9549 38 1 3.1502 -4.7020 -4.8731 39 1 5.1563 -5.8461 -6.0769 40 1 6.2657 -8.4123 -5.9920 41 1 6.0954 -10.6074 -4.9859 42 1 4.3185 -11.0881 -3.3174 43 1 2.7350 -9.3211 -2.6937 44 1 2.2626 -3.3964 -2.9013 45 1 3.5074 -4.6653 -2.9045 46 1 3.5853 -2.9266 -1.0204 47 1 3.7329 -4.6322 -0.5836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036768820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:04 Heat of formation + Delta-G solvation = 84.021289 kcal Electronic energy + Delta-G solvation = -29910.182506 eV Core-core repulsion = 26060.058171 eV Total energy + Delta-G solvation = -3850.124335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44592 -39.92800 -38.01480 -36.75568 -35.02077 -33.25432 -32.65931 -31.71589 -30.29979 -29.35140 -28.32904 -27.45248 -25.33577 -24.23246 -23.83689 -22.57509 -22.39964 -21.48760 -20.07883 -19.52070 -18.28794 -17.57801 -16.70533 -16.42399 -16.16146 -15.98830 -15.57197 -15.44166 -15.06412 -14.66990 -14.46572 -14.32264 -13.87702 -13.78304 -13.26871 -13.12582 -12.78861 -12.63245 -12.39926 -12.08287 -11.96893 -11.85814 -11.65188 -11.57332 -11.24283 -11.14315 -10.94576 -10.72646 -10.51160 -10.45713 -10.10194 -10.01899 -9.86346 -9.58527 -9.55901 -9.44589 -8.78966 -8.60856 -8.10952 -7.48426 -6.77514 -5.65532 -3.03953 0.55841 1.06537 2.35007 2.44590 3.11176 3.37945 3.39795 3.44902 3.47457 3.69349 4.23421 4.49115 4.55543 4.57830 4.71775 4.87334 5.03298 5.14702 5.29415 5.35711 5.39992 5.50420 5.54680 5.55789 5.60501 5.65433 5.69208 5.83036 5.94745 5.97393 6.03770 6.07081 6.12849 6.21818 6.34810 6.40433 6.43671 6.51176 6.54416 6.66304 6.68818 6.77620 6.90831 7.02342 7.03936 7.10201 7.55095 7.65873 7.86647 7.88507 8.36078 8.57070 9.23056 9.85581 10.52957 11.40628 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.003051 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.224877 B = 9174.871528 C =10118.819584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.157 3.843 11 C -0.143 4.143 12 C -0.105 4.105 13 H 0.075 0.925 14 C 0.121 3.879 15 N -0.592 5.592 16 C 0.590 3.410 17 O -0.559 6.559 18 C -0.224 4.224 19 C -0.104 4.104 20 C -0.064 4.064 21 N -0.340 5.340 22 C 0.048 3.952 23 C -0.145 4.145 24 C -0.122 4.122 25 C -0.078 4.078 26 C 0.100 3.900 27 C 0.113 3.887 28 C -0.135 4.135 29 C 0.173 3.827 30 H 0.008 0.992 31 H 0.251 0.749 32 H 0.014 0.986 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.157 0.843 39 H 0.173 0.827 40 H 0.162 0.838 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.148 0.852 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.481 -17.450 -10.023 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.033 3.967 11 C -0.182 4.182 12 C -0.125 4.125 13 H 0.094 0.906 14 C -0.002 4.002 15 N -0.322 5.322 16 C 0.380 3.620 17 O -0.439 6.439 18 C -0.234 4.234 19 C -0.126 4.126 20 C -0.189 4.189 21 N -0.004 5.004 22 C -0.073 4.073 23 C -0.165 4.165 24 C -0.143 4.143 25 C -0.097 4.097 26 C -0.008 4.008 27 C -0.010 4.010 28 C -0.175 4.175 29 C 0.065 3.935 30 H 0.025 0.975 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.174 0.826 39 H 0.190 0.810 40 H 0.179 0.821 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.166 0.834 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.212 -17.692 -10.088 22.783 hybrid contribution 0.676 1.042 -0.105 1.246 sum 10.888 -16.651 -10.194 22.354 Atomic orbital electron populations 1.69863 1.04851 1.24623 1.57516 1.24754 0.95664 0.97552 1.02627 0.86061 0.78650 0.83946 0.77212 1.20591 1.21864 1.21854 1.19015 0.90439 0.82313 1.42886 0.90459 1.44517 1.01817 0.99295 1.86271 1.21911 0.84680 0.91651 0.98508 1.23288 0.96045 0.99014 0.99818 1.22292 0.97284 0.97556 0.95407 0.90640 1.21344 0.86714 1.01728 0.90418 1.47366 1.20481 1.16562 1.47840 1.17088 0.84352 0.81419 0.79113 1.90760 1.44208 1.42697 1.66225 1.19358 1.02866 0.93458 1.07702 1.21130 0.95122 0.99422 0.96938 1.21689 1.05737 0.82611 1.08893 1.41482 1.20911 1.09740 1.28289 1.21656 0.95453 0.88082 1.02122 1.20742 1.00794 0.95878 0.99102 1.21066 0.95074 0.99896 0.98287 1.20740 0.99618 0.89814 0.99497 1.18552 0.92152 0.95147 0.94969 1.21516 0.90571 0.90578 0.98318 1.21241 0.99548 1.01640 0.95075 1.19435 0.91714 0.86656 0.95720 0.97451 0.93853 0.96767 0.88475 0.92056 0.92033 0.89674 0.90882 0.82576 0.80953 0.82053 0.83632 0.84590 0.83406 0.91377 0.89701 0.90039 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.18 55.49 0.56 -25.83 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -5.83 9.57 -15.06 -0.14 -5.97 16 8 H 0.08 2.00 7.01 -52.48 -0.37 1.63 16 9 N -0.59 -14.61 3.30 -165.66 -0.55 -15.15 16 10 C 0.16 3.74 5.35 -2.20 -0.01 3.73 16 11 C -0.14 -2.74 6.46 -23.95 -0.15 -2.90 16 12 C -0.11 -1.96 3.72 -89.06 -0.33 -2.29 16 13 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.12 2.19 5.42 -4.76 -0.03 2.16 16 15 N -0.59 -10.27 2.93 -177.18 -0.52 -10.79 16 16 C 0.59 10.40 7.53 -13.06 -0.10 10.30 16 17 O -0.56 -11.20 16.36 5.12 0.08 -11.12 16 18 C -0.22 -3.37 5.29 -104.46 -0.55 -3.92 16 19 C -0.10 -1.29 8.39 -39.56 -0.33 -1.62 16 20 C -0.06 -0.65 11.53 -16.58 -0.19 -0.85 16 21 N -0.34 -3.72 2.92 -60.81 -0.18 -3.90 16 22 C 0.05 0.37 10.89 -16.53 -0.18 0.19 16 23 C -0.14 -1.03 9.98 -39.96 -0.40 -1.43 16 24 C -0.12 -1.07 10.09 -39.49 -0.40 -1.47 16 25 C -0.08 -0.93 10.02 -39.50 -0.40 -1.33 16 26 C 0.10 1.36 6.70 -83.92 -0.56 0.80 16 27 C 0.11 1.85 5.55 -4.64 -0.03 1.82 16 28 C -0.14 -2.45 5.59 -29.08 -0.16 -2.61 16 29 C 0.17 3.56 2.65 -69.96 -0.19 3.38 16 30 H 0.01 0.17 8.08 -51.93 -0.42 -0.25 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 32 H 0.01 0.36 7.10 -51.93 -0.37 -0.01 16 33 H 0.10 2.62 6.09 -51.93 -0.32 2.31 16 34 H 0.06 1.05 7.98 -51.93 -0.41 0.64 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.54 6.97 -51.93 -0.36 1.18 16 37 H 0.07 1.43 6.49 -51.93 -0.34 1.09 16 38 H 0.16 1.74 7.32 -52.48 -0.38 1.35 16 39 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.15 1.84 7.98 -52.49 -0.42 1.42 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.21 4.71 -51.93 -0.24 0.97 16 46 H 0.08 1.57 6.60 -51.93 -0.34 1.22 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -32.93 366.24 -10.84 -43.77 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.49 Total: 3.21 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -4.25 Total: -2.36 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.68 Total: -55.67 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.93 -10.84 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.792 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds