Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99897 * 2 1 4 4 H 1.48499 * 109.47481 * 275.00130 * 3 2 1 5 5 H 1.48500 * 109.46860 * 34.99816 * 3 2 1 6 6 H 1.48495 * 109.47023 * 154.99890 * 3 2 1 7 7 C 1.38812 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99826 * 173.78712 * 7 2 1 9 9 N 1.36939 * 120.00282 * 353.77732 * 7 2 1 10 10 C 1.48158 * 126.40175 * 4.51066 * 9 7 2 11 11 C 1.55290 * 107.04151 * 184.93881 * 10 9 7 12 12 C 1.53740 * 101.84325 * 22.48202 * 11 10 9 13 13 H 1.09000 * 111.30448 * 78.94655 * 12 11 10 14 14 C 1.52662 * 114.68524 * 207.36186 * 12 11 10 15 15 N 1.47716 * 106.13938 * 169.72411 * 14 12 11 16 16 C 1.34782 * 119.68652 * 127.91664 * 15 14 12 17 17 O 1.21774 * 119.99944 * 3.95712 * 16 15 14 18 18 C 1.46206 * 119.99803 * 183.96386 * 16 15 14 19 19 C 1.41737 * 126.80040 * 310.93218 * 18 16 15 20 20 C 1.34522 * 107.77714 * 180.02562 * 19 18 16 21 21 N 1.36950 * 109.60395 * 0.02562 * 20 19 18 22 22 C 1.36704 * 131.35280 * 180.02562 * 21 20 19 23 23 C 1.35007 * 120.75648 * 180.02562 * 22 21 20 24 24 C 1.40302 * 120.37996 * 359.97438 * 23 22 21 25 25 C 1.36337 * 119.45842 * 0.02562 * 24 23 22 26 26 C 1.36950 * 108.74102 * 359.97438 * 21 20 19 27 27 C 1.46598 * 120.63000 * 307.63425 * 15 14 12 28 28 C 1.53953 * 110.58188 * 48.07341 * 27 15 14 29 29 C 1.45469 * 126.40748 * 184.53100 * 9 7 2 30 30 H 1.08999 * 108.78162 * 265.97725 * 29 9 7 31 31 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.92402 * 65.59005 * 10 9 7 33 33 H 1.09005 * 110.08597 * 304.37681 * 10 9 7 34 34 H 1.08998 * 110.95490 * 264.34401 * 11 10 9 35 35 H 1.08997 * 110.95363 * 140.61712 * 11 10 9 36 36 H 1.09003 * 110.22046 * 50.56142 * 14 12 11 37 37 H 1.08997 * 110.13707 * 288.84213 * 14 12 11 38 38 H 1.07997 * 126.10913 * 0.05593 * 19 18 16 39 39 H 1.07995 * 125.19925 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.62033 * 0.02562 * 22 21 20 41 41 H 1.08001 * 119.80589 * 180.27757 * 23 22 21 42 42 H 1.08000 * 120.27180 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.34219 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.25787 * 168.36518 * 27 15 14 45 45 H 1.09000 * 109.25100 * 287.83266 * 27 15 14 46 46 H 1.08996 * 109.87967 * 68.41370 * 28 27 15 47 47 H 1.09001 * 109.87857 * 189.48904 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5044 2.6198 0.8030 6 1 3.5965 1.4120 0.5917 7 6 2.0103 -1.2022 -0.0005 8 1 3.0855 -1.2048 -0.1018 9 7 1.3317 -2.3847 0.1275 10 6 -0.1394 -2.5529 0.1811 11 6 -0.4158 -4.0558 0.4571 12 6 0.9049 -4.5063 1.1024 13 1 0.9550 -4.2101 2.1503 14 6 1.2373 -5.9837 0.9098 15 7 2.6305 -6.1546 1.3701 16 6 2.9228 -7.1124 2.2722 17 8 2.0547 -7.8784 2.6498 18 6 4.2820 -7.2315 2.7976 19 6 5.4830 -7.2644 2.0457 20 6 6.5062 -7.3826 2.9110 21 7 6.0222 -7.4284 4.1913 22 6 6.6608 -7.5416 5.3947 23 6 5.9601 -7.5664 6.5484 24 6 4.5601 -7.4755 6.5305 25 6 3.9108 -7.3622 5.3370 26 6 4.6564 -7.3370 4.1489 27 6 3.6994 -5.2964 0.8504 28 6 3.2780 -3.8165 0.9008 29 6 1.9203 -3.7105 0.2366 30 1 1.9700 -4.1553 -0.7573 31 1 -0.4850 0.8400 0.0004 32 1 -0.5814 -2.2629 -0.7721 33 1 -0.5566 -1.9450 0.9840 34 1 -0.5997 -4.5954 -0.4719 35 1 -1.2492 -4.1783 1.1488 36 1 1.1554 -6.2542 -0.1430 37 1 0.5672 -6.6003 1.5088 38 1 5.5625 -7.2047 0.9703 39 1 7.5497 -7.4343 2.6377 40 1 7.7381 -7.6120 5.4228 41 1 6.4806 -7.6518 7.4909 42 1 4.0013 -7.4960 7.4544 43 1 2.8336 -7.2909 5.3066 44 1 4.5970 -5.4353 1.4530 45 1 3.9130 -5.5737 -0.1819 46 1 3.2105 -3.4855 1.9371 47 1 4.0029 -3.2061 0.3623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036768821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = 63.253268 kcal Electronic energy + Delta-G solvation = -29676.532319 eV Core-core repulsion = 25825.507415 eV Total energy + Delta-G solvation = -3851.024904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.24285 -41.26667 -39.52954 -37.51822 -36.70472 -34.58712 -33.92962 -32.99821 -31.51612 -30.89163 -29.82105 -28.75116 -26.70484 -25.48979 -24.59697 -23.78150 -23.34055 -22.28862 -21.85886 -21.13862 -20.09106 -18.82818 -18.27143 -17.43229 -17.38439 -16.99912 -16.80659 -16.44326 -16.23589 -16.01648 -15.90383 -15.60554 -15.28698 -15.02448 -14.63306 -14.55508 -14.16903 -13.84090 -13.76236 -13.54233 -13.33490 -13.09239 -13.06166 -12.80288 -12.70474 -12.52800 -12.45286 -12.26526 -12.07781 -11.99715 -11.78005 -11.60131 -11.52201 -11.36807 -11.02477 -10.82955 -10.66973 -9.66778 -9.57134 -8.86391 -8.30261 -7.83300 -5.16517 -0.17805 0.31821 1.40388 1.46000 1.47717 1.56672 1.67133 1.99188 2.27012 2.51327 2.59820 3.35185 3.45466 3.60087 3.76679 3.85216 3.89698 3.97220 3.98865 4.02354 4.10152 4.23259 4.24596 4.26853 4.39116 4.45840 4.54770 4.66367 4.72719 4.77363 4.81954 4.84309 4.90437 4.91924 4.95800 5.05953 5.08867 5.19191 5.22978 5.33290 5.38447 5.48076 5.54414 5.58327 5.66653 5.71521 5.77120 5.88140 6.21593 6.34551 6.47178 7.10112 7.21620 7.80422 8.50047 9.29187 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.003057 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.423549 B = 9158.568094 C = 9958.176015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.230 4.230 8 H 0.087 0.913 9 N -0.616 5.616 10 C 0.182 3.818 11 C -0.121 4.121 12 C -0.108 4.108 13 H 0.057 0.943 14 C 0.136 3.864 15 N -0.602 5.602 16 C 0.590 3.410 17 O -0.594 6.594 18 C -0.273 4.273 19 C -0.116 4.116 20 C -0.053 4.053 21 N -0.344 5.344 22 C 0.052 3.948 23 C -0.150 4.150 24 C -0.098 4.098 25 C -0.132 4.132 26 C 0.084 3.916 27 C 0.117 3.883 28 C -0.120 4.120 29 C 0.159 3.841 30 H 0.025 0.975 31 H 0.245 0.755 32 H 0.004 0.996 33 H 0.017 0.983 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.171 0.829 39 H 0.215 0.785 40 H 0.207 0.793 41 H 0.187 0.813 42 H 0.158 0.842 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.320 -18.157 10.478 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.359 4.359 8 H 0.105 0.895 9 N -0.341 5.341 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.129 4.129 13 H 0.076 0.924 14 C 0.014 3.986 15 N -0.333 5.333 16 C 0.381 3.619 17 O -0.476 6.476 18 C -0.282 4.282 19 C -0.137 4.137 20 C -0.177 4.177 21 N -0.007 5.007 22 C -0.068 4.068 23 C -0.169 4.169 24 C -0.119 4.119 25 C -0.151 4.151 26 C -0.026 4.026 27 C -0.006 4.006 28 C -0.159 4.159 29 C 0.052 3.948 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.035 0.965 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.189 0.811 39 H 0.231 0.769 40 H 0.224 0.776 41 H 0.204 0.796 42 H 0.176 0.824 43 H 0.140 0.860 44 H 0.127 0.873 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.085 -18.329 10.729 27.257 hybrid contribution -0.594 1.487 -0.220 1.617 sum 16.490 -16.842 10.508 25.807 Atomic orbital electron populations 1.70181 1.06408 1.25078 1.58628 1.25652 0.96514 1.00997 1.03121 0.85125 0.77923 0.79514 0.77218 1.21457 1.22489 1.19047 1.19409 0.91545 0.83507 1.41393 0.89499 1.44512 1.02237 1.01820 1.85519 1.21300 0.83847 0.91753 0.97392 1.22588 0.96649 0.95968 1.00784 1.22524 0.96682 0.94891 0.98776 0.92412 1.21552 0.81976 0.94603 1.00481 1.48202 1.09235 1.33273 1.42567 1.17599 0.87395 0.79415 0.77492 1.90735 1.50785 1.44509 1.61604 1.19263 0.93422 1.23018 0.92498 1.21270 0.89527 1.02430 1.00502 1.22300 1.01353 1.14793 0.79251 1.41758 1.06099 1.45418 1.07464 1.22549 1.00938 1.01313 0.82047 1.21274 0.93796 1.02669 0.99161 1.21493 0.95549 0.97018 0.97852 1.20679 1.00256 1.03168 0.90995 1.18664 0.83847 1.05740 0.94353 1.22009 0.90079 0.87835 1.00636 1.21783 0.97499 0.96388 1.00218 1.20875 0.93127 0.85456 0.95345 0.95769 0.94610 0.97743 0.96450 0.90136 0.90527 0.89620 0.89776 0.81121 0.76855 0.77605 0.79581 0.82395 0.85955 0.87314 0.89650 0.93612 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 10.47 21.65 0.23 -58.34 16 2 C -0.07 -4.05 5.48 84.86 0.47 -3.58 16 3 Si 0.97 46.10 29.56 68.60 2.03 48.13 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.23 -12.80 9.85 84.03 0.83 -11.97 16 8 H 0.09 4.56 7.28 -2.91 -0.02 4.54 16 9 N -0.62 -31.91 3.35 -669.89 -2.24 -34.15 16 10 C 0.18 9.28 5.47 86.85 0.47 9.76 16 11 C -0.12 -4.66 6.54 31.63 0.21 -4.46 16 12 C -0.11 -4.05 2.87 -9.84 -0.03 -4.08 16 13 H 0.06 2.41 8.12 -2.39 -0.02 2.39 16 14 C 0.14 4.38 5.97 86.03 0.51 4.90 16 15 N -0.60 -18.85 2.99 -822.41 -2.46 -21.31 16 16 C 0.59 19.99 7.50 86.31 0.65 20.64 16 17 O -0.59 -24.04 16.49 -4.58 -0.08 -24.11 16 18 C -0.27 -7.72 5.12 -19.76 -0.10 -7.82 16 19 C -0.12 -2.34 8.39 22.28 0.19 -2.16 16 20 C -0.05 -0.81 11.53 83.04 0.96 0.15 16 21 N -0.34 -6.31 2.92 -346.29 -1.01 -7.32 16 22 C 0.05 0.57 10.89 83.19 0.91 1.47 16 23 C -0.15 -1.54 9.98 22.03 0.22 -1.32 16 24 C -0.10 -1.57 10.09 22.33 0.23 -1.35 16 25 C -0.13 -3.25 10.06 22.32 0.22 -3.03 16 26 C 0.08 2.19 6.72 39.43 0.27 2.45 16 27 C 0.12 3.17 5.61 86.68 0.49 3.66 16 28 C -0.12 -4.16 5.50 30.43 0.17 -4.00 16 29 C 0.16 6.48 2.55 45.51 0.12 6.59 16 30 H 0.02 1.00 7.94 -2.39 -0.02 0.98 16 31 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.00 0.25 7.85 -2.38 -0.02 0.23 16 33 H 0.02 1.00 7.13 -2.38 -0.02 0.98 16 34 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 35 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.09 2.48 8.08 -2.39 -0.02 2.46 16 37 H 0.08 2.83 7.02 -2.39 -0.02 2.81 16 38 H 0.17 2.65 7.61 -2.91 -0.02 2.63 16 39 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.21 0.35 8.06 -2.91 -0.02 0.33 16 41 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 42 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.12 3.42 8.06 -2.91 -0.02 3.39 16 44 H 0.11 2.61 4.65 -2.39 -0.01 2.60 16 45 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.05 1.76 8.12 -2.39 -0.02 1.74 16 47 H 0.08 2.62 7.64 -2.39 -0.02 2.60 16 Total: -1.00 -80.53 371.66 4.19 -76.34 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.97 Total: 14.92 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.76 Total: 5.85 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -5.49 Total: -121.12 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.08 Total: -24.11 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -80.53 4.19 -76.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.589 kcal (2) G-P(sol) polarization free energy of solvation -80.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds