Wall clock time and date at job start Sat Apr 11 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99754 * 2 1 4 4 H 1.48511 * 109.46829 * 270.00329 * 3 2 1 5 5 H 1.48498 * 109.47335 * 29.99598 * 3 2 1 6 6 H 1.48496 * 109.47498 * 149.99956 * 3 2 1 7 7 C 1.38811 * 120.00544 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00196 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.47738 * 125.97415 * 359.97417 * 9 7 2 11 11 C 1.55064 * 104.87519 * 157.70125 * 10 9 7 12 12 C 1.56002 * 101.17096 * 36.82699 * 11 10 9 13 13 H 1.09001 * 110.87147 * 204.43704 * 12 11 10 14 14 C 1.52049 * 107.47238 * 83.32794 * 12 11 10 15 15 N 1.46115 * 111.67610 * 208.67217 * 14 12 11 16 16 C 1.34773 * 120.93610 * 232.42856 * 15 14 12 17 17 O 1.21780 * 119.99922 * 5.55514 * 16 15 14 18 18 C 1.46204 * 120.00312 * 185.56186 * 16 15 14 19 19 C 1.41749 * 126.79921 * 42.03436 * 18 16 15 20 20 C 1.34520 * 107.77576 * 179.97438 * 19 18 16 21 21 N 1.36952 * 109.60464 * 359.47851 * 20 19 18 22 22 C 1.36703 * 131.35101 * 180.02562 * 21 20 19 23 23 C 1.34998 * 120.75421 * 179.70314 * 22 21 20 24 24 C 1.40308 * 120.38168 * 0.28458 * 23 22 21 25 25 C 1.36343 * 119.45902 * 359.97438 * 24 23 22 26 26 C 1.36945 * 108.73892 * 0.25911 * 21 20 19 27 27 C 1.47074 * 118.13349 * 52.69762 * 15 14 12 28 28 C 1.53093 * 107.54160 * 300.89842 * 27 15 14 29 29 C 1.46504 * 125.97323 * 179.97438 * 9 7 2 30 30 H 1.09004 * 106.03362 * 291.67954 * 29 9 7 31 31 H 0.96993 * 120.00118 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.35695 * 38.85594 * 10 9 7 33 33 H 1.08996 * 110.35991 * 276.55428 * 10 9 7 34 34 H 1.08999 * 111.08749 * 278.85701 * 11 10 9 35 35 H 1.08997 * 111.08474 * 154.80117 * 11 10 9 36 36 H 1.08999 * 109.04024 * 88.10575 * 14 12 11 37 37 H 1.09003 * 109.03926 * 329.23908 * 14 12 11 38 38 H 1.08007 * 126.10673 * 359.38476 * 19 18 16 39 39 H 1.08000 * 125.19463 * 179.46645 * 20 19 18 40 40 H 1.08002 * 119.62167 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.81163 * 180.30002 * 23 22 21 42 42 H 1.07997 * 120.26977 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.33801 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.79703 * 60.48874 * 27 15 14 45 45 H 1.09001 * 109.79433 * 181.34375 * 27 15 14 46 46 H 1.09001 * 109.01719 * 291.80147 * 28 27 15 47 47 H 1.08999 * 108.82600 * 173.28897 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4002 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 -0.1436 -2.5418 0.0005 11 6 -0.3951 -3.9623 -0.5681 12 6 0.8000 -4.7515 0.0505 13 1 1.0396 -5.6281 -0.5514 14 6 0.3973 -5.1600 1.4586 15 7 1.5577 -5.2797 2.3385 16 6 1.7692 -6.3997 3.0577 17 8 1.0460 -7.3674 2.9044 18 6 2.8668 -6.4529 4.0220 19 6 3.2530 -5.4318 4.9261 20 6 4.3045 -5.8847 5.6324 21 7 4.6106 -7.1590 5.2348 22 6 5.5819 -8.0262 5.6509 23 6 5.6886 -9.2565 5.1057 24 6 4.8046 -9.6640 4.0953 25 6 3.8344 -8.8069 3.6673 26 6 3.7397 -7.5325 4.2461 27 6 2.4852 -4.1414 2.4218 28 6 3.0225 -3.8798 1.0123 29 6 1.9224 -3.7260 0.0005 30 1 2.3984 -3.8434 -0.9730 31 1 -0.4850 0.8400 0.0004 32 1 -0.6036 -1.7899 -0.6406 33 1 -0.5329 -2.4653 1.0157 34 1 -0.3440 -3.9636 -1.6569 35 1 -1.3489 -4.3602 -0.2217 36 1 -0.1178 -6.1197 1.4169 37 1 -0.2818 -4.4108 1.8657 38 1 2.7919 -4.4599 5.0233 39 1 4.8274 -5.3283 6.3962 40 1 6.2691 -7.7251 6.4279 41 1 6.4588 -9.9312 5.4494 42 1 4.8918 -10.6486 3.6601 43 1 3.1466 -9.1057 2.8901 44 1 1.9570 -3.2608 2.7875 45 1 3.3085 -4.3844 3.0936 46 1 3.6613 -4.7117 0.7157 47 1 3.6186 -2.9674 1.0269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036768822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:14 Heat of formation + Delta-G solvation = 83.195687 kcal Electronic energy + Delta-G solvation = -29937.582551 eV Core-core repulsion = 26087.422416 eV Total energy + Delta-G solvation = -3850.160136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42835 -39.84606 -38.00492 -36.73945 -34.93485 -33.24787 -32.67516 -31.62272 -30.28492 -29.37262 -28.29832 -27.44778 -25.32154 -24.21010 -23.82194 -22.55248 -22.40351 -21.48410 -20.09452 -19.49525 -18.26082 -17.56497 -16.69063 -16.42109 -16.21381 -15.96386 -15.54782 -15.41279 -15.06064 -14.66510 -14.41301 -14.33321 -13.86990 -13.77853 -13.21682 -13.12898 -12.77273 -12.64170 -12.37203 -12.06861 -11.95080 -11.84983 -11.66011 -11.54798 -11.17245 -11.12888 -10.98808 -10.73216 -10.51521 -10.49021 -10.13581 -10.02856 -9.88922 -9.59064 -9.53670 -9.43212 -8.77569 -8.61401 -8.12940 -7.47080 -6.78074 -5.65047 -3.04071 0.57036 1.08059 2.36806 2.45890 3.11998 3.36685 3.39849 3.44830 3.46735 3.66845 4.24551 4.49109 4.56753 4.58726 4.72894 4.88284 5.04445 5.15904 5.30484 5.36066 5.40517 5.51393 5.54240 5.56160 5.60369 5.66815 5.71306 5.83095 5.95410 5.97276 6.05476 6.08736 6.13960 6.22439 6.31374 6.40467 6.43753 6.51764 6.55738 6.65424 6.68823 6.76441 6.90774 7.00955 7.04690 7.08340 7.54549 7.65476 7.86616 7.88105 8.36558 8.56945 9.23261 9.85469 10.52835 11.40602 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.003136 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.647584 B = 8927.631092 C = 9927.560267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.156 3.844 11 C -0.142 4.142 12 C -0.103 4.103 13 H 0.071 0.929 14 C 0.125 3.875 15 N -0.595 5.595 16 C 0.592 3.408 17 O -0.560 6.560 18 C -0.223 4.223 19 C -0.104 4.104 20 C -0.063 4.063 21 N -0.340 5.340 22 C 0.048 3.952 23 C -0.145 4.145 24 C -0.122 4.122 25 C -0.078 4.078 26 C 0.099 3.901 27 C 0.110 3.890 28 C -0.135 4.135 29 C 0.173 3.827 30 H 0.010 0.990 31 H 0.251 0.749 32 H 0.100 0.900 33 H 0.013 0.987 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.157 0.843 39 H 0.173 0.827 40 H 0.162 0.838 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.148 0.852 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 -16.173 10.680 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.031 3.969 11 C -0.181 4.181 12 C -0.123 4.123 13 H 0.089 0.911 14 C 0.002 3.998 15 N -0.325 5.325 16 C 0.381 3.619 17 O -0.440 6.440 18 C -0.232 4.232 19 C -0.126 4.126 20 C -0.189 4.189 21 N -0.004 5.004 22 C -0.073 4.073 23 C -0.166 4.166 24 C -0.143 4.143 25 C -0.097 4.097 26 C -0.009 4.009 27 C -0.012 4.012 28 C -0.175 4.175 29 C 0.065 3.935 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.174 0.826 39 H 0.191 0.809 40 H 0.179 0.821 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.067 0.933 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.051 -16.445 10.748 22.068 hybrid contribution 0.644 1.039 0.098 1.226 sum 10.695 -15.406 10.846 21.665 Atomic orbital electron populations 1.69836 1.04845 1.24723 1.57510 1.24748 0.95654 0.97535 1.02630 0.86135 0.78519 0.83665 0.77540 1.21719 1.21764 1.20793 1.18976 0.90414 0.82308 1.42939 0.90527 1.44541 1.01764 0.99262 1.86255 1.21908 0.84736 0.91861 0.98359 1.23296 0.95868 0.99056 0.99912 1.21878 0.97479 0.97485 0.95471 0.91106 1.21197 0.87104 1.02091 0.89366 1.47761 1.26494 1.15582 1.42701 1.17065 0.83013 0.82096 0.79679 1.90760 1.48945 1.35545 1.68776 1.19344 1.02948 0.95115 1.05841 1.21113 0.96335 0.99073 0.96090 1.21686 1.04193 0.84914 1.08063 1.41475 1.21259 1.12030 1.25679 1.21657 0.93237 0.90809 1.01573 1.20739 1.01667 0.95316 0.98828 1.21060 0.95227 1.00409 0.97637 1.20729 0.98639 0.90444 0.99873 1.18543 0.93849 0.95219 0.93307 1.21934 0.92812 0.88250 0.98211 1.21652 0.99211 1.01333 0.95265 1.19530 0.91737 0.86500 0.95746 0.97241 0.93805 0.88267 0.96920 0.91972 0.92066 0.89908 0.91369 0.82584 0.80944 0.82056 0.83642 0.84609 0.83476 0.90597 0.89632 0.93270 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.17 55.49 0.56 -25.74 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.22 -5.80 9.62 -15.06 -0.14 -5.95 16 8 H 0.08 1.97 7.09 -52.49 -0.37 1.60 16 9 N -0.59 -14.52 3.29 -165.48 -0.54 -15.06 16 10 C 0.16 3.70 5.50 -2.27 -0.01 3.69 16 11 C -0.14 -2.71 6.38 -24.03 -0.15 -2.87 16 12 C -0.10 -1.90 3.45 -89.95 -0.31 -2.21 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.12 2.24 5.64 -4.73 -0.03 2.21 16 15 N -0.59 -10.35 2.93 -175.76 -0.52 -10.86 16 16 C 0.59 10.47 7.53 -13.06 -0.10 10.37 16 17 O -0.56 -11.26 16.52 5.12 0.08 -11.18 16 18 C -0.22 -3.39 5.26 -104.46 -0.55 -3.94 16 19 C -0.10 -1.31 8.41 -39.56 -0.33 -1.64 16 20 C -0.06 -0.66 11.53 -16.58 -0.19 -0.85 16 21 N -0.34 -3.78 2.92 -60.81 -0.18 -3.96 16 22 C 0.05 0.38 10.89 -16.53 -0.18 0.20 16 23 C -0.15 -1.05 9.98 -39.95 -0.40 -1.45 16 24 C -0.12 -1.08 10.09 -39.49 -0.40 -1.48 16 25 C -0.08 -0.94 10.06 -39.49 -0.40 -1.34 16 26 C 0.10 1.36 6.71 -83.91 -0.56 0.80 16 27 C 0.11 1.85 5.81 -3.68 -0.02 1.82 16 28 C -0.13 -2.45 5.62 -28.05 -0.16 -2.61 16 29 C 0.17 3.55 2.69 -69.75 -0.19 3.37 16 30 H 0.01 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.10 2.67 6.04 -51.93 -0.31 2.35 16 33 H 0.01 0.32 7.44 -51.93 -0.39 -0.06 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.04 7.94 -51.93 -0.41 0.63 16 36 H 0.08 1.47 6.96 -51.93 -0.36 1.11 16 37 H 0.07 1.28 6.80 -51.93 -0.35 0.93 16 38 H 0.16 1.78 7.44 -52.48 -0.39 1.39 16 39 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.26 4.62 -51.93 -0.24 1.02 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.50 6.82 -51.93 -0.35 1.15 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -32.76 367.79 -10.83 -43.59 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.54 Total: 3.31 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -4.22 Total: -2.24 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.67 Total: -55.63 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.76 -10.83 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.790 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds