Wall clock time and date at job start Sat Apr 11 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99906 * 2 1 4 4 H 1.48503 * 109.46883 * 269.99747 * 3 2 1 5 5 H 1.48499 * 109.47389 * 29.99507 * 3 2 1 6 6 H 1.48491 * 109.47310 * 150.00029 * 3 2 1 7 7 C 1.38810 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99774 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.48165 * 126.40231 * 0.02562 * 9 7 2 11 11 C 1.55284 * 107.03855 * 175.07837 * 10 9 7 12 12 C 1.53749 * 101.84560 * 337.52086 * 11 10 9 13 13 H 1.08995 * 111.31010 * 280.15225 * 12 11 10 14 14 C 1.52239 * 114.73897 * 152.75085 * 12 11 10 15 15 N 1.47718 * 106.36822 * 190.43446 * 14 12 11 16 16 C 1.34777 * 119.68294 * 232.08564 * 15 14 12 17 17 O 1.21613 * 119.99783 * 355.76277 * 16 15 14 18 18 C 1.47371 * 119.99979 * 175.76717 * 16 15 14 19 19 C 1.39318 * 120.34597 * 54.03755 * 18 16 15 20 20 C 1.38276 * 120.20143 * 179.76667 * 19 18 16 21 21 C 1.38055 * 120.88207 * 0.51651 * 20 19 18 22 22 C 1.38977 * 120.27018 * 359.73388 * 21 20 19 23 23 N 1.37798 * 133.37763 * 180.02562 * 22 21 20 24 24 H 0.97006 * 125.07410 * 359.95861 * 23 22 21 25 25 C 1.36541 * 109.85421 * 179.97438 * 23 22 21 26 26 C 1.34550 * 109.90263 * 0.02562 * 25 23 22 27 27 C 1.40666 * 119.51607 * 0.02562 * 22 21 20 28 28 C 1.46598 * 120.63342 * 52.05420 * 15 14 12 29 29 C 1.53950 * 110.57639 * 312.18129 * 28 15 14 30 30 C 1.45464 * 126.40471 * 179.71503 * 9 7 2 31 31 H 1.08994 * 109.26670 * 93.80021 * 30 9 7 32 32 H 0.96998 * 120.00105 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.92189 * 294.42559 * 10 9 7 34 34 H 1.09000 * 109.91771 * 55.73262 * 10 9 7 35 35 H 1.09000 * 110.95493 * 95.66372 * 11 10 9 36 36 H 1.09003 * 110.95386 * 219.38320 * 11 10 9 37 37 H 1.09005 * 110.07080 * 309.64313 * 14 12 11 38 38 H 1.08999 * 110.07204 * 71.21945 * 14 12 11 39 39 H 1.08002 * 119.89625 * 0.02562 * 19 18 16 40 40 H 1.08002 * 119.55706 * 180.27719 * 20 19 18 41 41 H 1.07996 * 119.86525 * 179.76818 * 21 20 19 42 42 H 1.08006 * 125.05282 * 180.02562 * 25 23 22 43 43 H 1.08000 * 126.49864 * 180.02562 * 26 25 23 44 44 H 1.09000 * 109.25337 * 72.46859 * 28 15 14 45 45 H 1.09000 * 109.25137 * 191.93365 * 28 15 14 46 46 H 1.09003 * 109.88420 * 170.51608 * 29 28 15 47 47 H 1.09003 * 109.88080 * 291.51571 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1468 -2.5534 -0.0005 11 6 -0.4339 -4.0742 -0.1274 12 6 0.8691 -4.5896 -0.7603 13 1 0.8867 -4.4074 -1.8347 14 6 1.2013 -6.0408 -0.4421 15 7 2.5834 -6.2644 -0.9133 16 6 2.8505 -7.3036 -1.7289 17 8 1.9723 -8.0961 -2.0116 18 6 4.2066 -7.4796 -2.2782 19 6 5.3096 -7.5265 -1.4283 20 6 6.5802 -7.6966 -1.9465 21 6 6.7809 -7.8119 -3.3075 22 6 5.7013 -7.7638 -4.1814 23 7 5.5887 -7.8485 -5.5521 24 1 6.3304 -7.9661 -6.1662 25 6 4.2773 -7.7418 -5.9172 26 6 3.5086 -7.5870 -4.8238 27 6 4.4020 -7.5962 -3.6691 28 6 3.6670 -5.3665 -0.5029 29 6 3.2484 -3.8959 -0.6824 30 6 1.9079 -3.7211 -0.0048 31 1 1.9934 -4.0803 1.0207 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5639 -2.1733 0.9320 34 1 -0.5795 -2.0217 -0.8480 35 1 -0.5958 -4.5234 0.8524 36 1 -1.2848 -4.2568 -0.7837 37 1 1.1405 -6.2115 0.6328 38 1 0.5151 -6.7054 -0.9668 39 1 5.1712 -7.4340 -0.3612 40 1 7.4274 -7.7360 -1.2778 41 1 7.7808 -7.9405 -3.6947 42 1 3.9113 -7.7765 -6.9328 43 1 2.4344 -7.4776 -4.8041 44 1 3.9059 -5.5469 0.5452 45 1 4.5488 -5.5656 -1.1119 46 1 3.9879 -3.2410 -0.2216 47 1 3.1575 -3.6632 -1.7434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036827207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:18 Heat of formation + Delta-G solvation = 64.668527 kcal Electronic energy + Delta-G solvation = -29766.715158 eV Core-core repulsion = 25915.751624 eV Total energy + Delta-G solvation = -3850.963534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49944 -40.07638 -38.22180 -36.83077 -35.26745 -32.78689 -32.09682 -31.51089 -30.12004 -29.37779 -28.91972 -27.88949 -25.10306 -24.21913 -22.80662 -22.44499 -21.85029 -21.10236 -20.10156 -19.87531 -19.21316 -17.79815 -17.06467 -16.41604 -16.03531 -15.72171 -15.35454 -15.15977 -14.89011 -14.56209 -14.33777 -14.11930 -13.86013 -13.65193 -13.26019 -12.99678 -12.95775 -12.74326 -12.61366 -12.37440 -11.88306 -11.79099 -11.59047 -11.55037 -11.38943 -11.32743 -10.80149 -10.76374 -10.63377 -10.13565 -10.08307 -9.89549 -9.83964 -9.60916 -9.55815 -9.41392 -8.60278 -8.45148 -8.40248 -7.86281 -6.80890 -5.69465 -3.02380 0.68850 1.39076 2.54165 2.77219 2.93835 3.15519 3.40688 3.45575 3.47579 3.73205 4.42110 4.51007 4.61002 4.74152 4.93962 4.97084 5.11505 5.16943 5.20003 5.31289 5.37388 5.40875 5.53543 5.59527 5.64056 5.68304 5.73090 5.86585 5.90109 5.94767 6.08786 6.19120 6.22334 6.24416 6.26898 6.30093 6.40914 6.45700 6.53268 6.57890 6.66489 6.69690 6.88555 6.91219 7.11507 7.29394 7.55752 7.58217 7.64693 7.83366 8.26776 8.30260 9.21715 9.85344 10.53786 11.43129 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003140 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.392239 B = 8915.483296 C = 9581.062819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.123 4.123 13 H 0.079 0.921 14 C 0.127 3.873 15 N -0.599 5.599 16 C 0.560 3.440 17 O -0.540 6.540 18 C -0.073 4.073 19 C -0.115 4.115 20 C -0.104 4.104 21 C -0.114 4.114 22 C 0.090 3.910 23 N -0.597 5.597 24 H 0.416 0.584 25 C 0.052 3.948 26 C -0.193 4.193 27 C -0.067 4.067 28 C 0.104 3.896 29 C -0.129 4.129 30 C 0.169 3.831 31 H 0.018 0.982 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.122 0.878 42 H 0.173 0.827 43 H 0.149 0.851 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.254 -17.078 -7.706 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.143 4.143 13 H 0.097 0.903 14 C 0.005 3.995 15 N -0.331 5.331 16 C 0.348 3.652 17 O -0.418 6.418 18 C -0.076 4.076 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.016 4.016 23 N -0.200 5.200 24 H 0.252 0.748 25 C -0.074 4.074 26 C -0.218 4.218 27 C -0.072 4.072 28 C -0.020 4.020 29 C -0.169 4.169 30 C 0.060 3.940 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.190 0.810 43 H 0.166 0.834 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.789 -17.233 -7.916 22.330 hybrid contribution 0.824 1.016 -0.339 1.351 sum 12.613 -16.217 -8.256 22.141 Atomic orbital electron populations 1.69943 1.04874 1.24976 1.57124 1.24785 0.95669 0.97591 1.02421 0.86159 0.78609 0.83731 0.77516 1.21703 1.21727 1.20722 1.18999 0.90358 0.82334 1.43567 0.90396 1.44215 1.01671 0.99473 1.86542 1.21525 0.83925 0.88306 1.00916 1.22717 0.95766 0.99658 0.99328 1.22566 0.97808 0.93329 1.00646 0.90291 1.21636 0.81501 0.97087 0.99245 1.48250 1.09904 1.27294 1.47651 1.18270 0.87728 0.81134 0.78101 1.90766 1.47397 1.43568 1.60080 1.19277 0.93337 1.02933 0.92070 1.21094 0.91490 1.01317 0.99527 1.20694 0.96964 1.00619 0.94034 1.20108 0.96359 1.04553 0.92472 1.18140 0.95278 1.04631 0.83594 1.41701 1.08247 1.64861 1.05202 0.74760 1.21884 0.82387 1.03431 0.99716 1.21775 0.99407 1.10671 0.89926 1.18910 0.92684 1.03724 0.91923 1.22040 0.89523 0.90276 1.00122 1.21840 0.99343 0.93649 1.02026 1.20487 0.91152 0.87157 0.95179 0.96455 0.93798 0.94356 0.92791 0.92314 0.92064 0.91259 0.89240 0.85165 0.85061 0.86014 0.81010 0.83372 0.91645 0.89375 0.90573 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.44 55.49 0.58 -26.44 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -6.12 9.88 -15.06 -0.15 -6.27 16 8 H 0.08 2.04 7.21 -52.49 -0.38 1.66 16 9 N -0.59 -14.91 3.35 -163.46 -0.55 -15.46 16 10 C 0.18 4.30 5.45 -1.92 -0.01 4.29 16 11 C -0.14 -2.55 6.54 -25.13 -0.16 -2.72 16 12 C -0.12 -2.25 2.85 -89.53 -0.26 -2.50 16 13 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 14 C 0.13 2.03 5.94 -3.76 -0.02 2.00 16 15 N -0.60 -9.27 3.00 -173.78 -0.52 -9.79 16 16 C 0.56 9.13 7.08 -12.54 -0.09 9.04 16 17 O -0.54 -10.33 16.46 5.27 0.09 -10.24 16 18 C -0.07 -1.03 4.81 -104.76 -0.50 -1.53 16 19 C -0.11 -1.29 7.45 -39.17 -0.29 -1.58 16 20 C -0.10 -0.96 9.99 -39.63 -0.40 -1.36 16 21 C -0.11 -1.06 10.05 -39.37 -0.40 -1.46 16 22 C 0.09 1.00 7.27 -83.99 -0.61 0.39 16 23 N -0.60 -5.06 6.06 -10.66 -0.06 -5.12 16 24 H 0.42 2.04 8.96 -40.82 -0.37 1.67 16 25 C 0.05 0.47 11.82 -16.76 -0.20 0.28 16 26 C -0.19 -2.47 10.95 -37.78 -0.41 -2.88 16 27 C -0.07 -0.92 6.17 -104.85 -0.65 -1.57 16 28 C 0.10 1.45 5.24 -3.49 -0.02 1.44 16 29 C -0.13 -2.25 5.48 -27.13 -0.15 -2.40 16 30 C 0.17 3.40 2.55 -68.30 -0.17 3.22 16 31 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 34 H 0.05 1.45 7.21 -51.93 -0.37 1.08 16 35 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 38 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 39 H 0.13 1.28 7.33 -52.49 -0.38 0.89 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.12 4.84 -51.93 -0.25 0.87 16 46 H 0.08 1.33 7.62 -51.93 -0.40 0.93 16 47 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -34.12 370.37 -11.18 -45.30 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.69 Total: 3.14 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -4.58 Total: -3.93 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.56 Total: -56.80 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.12 -11.18 -45.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036827207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.970 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds