Wall clock time and date at job start Sat Apr 11 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86789 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47516 * 274.99603 * 3 2 1 5 5 H 1.48506 * 109.47159 * 34.99431 * 3 2 1 6 6 H 1.48502 * 109.47462 * 154.99280 * 3 2 1 7 7 C 1.38817 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99609 * 185.06093 * 7 2 1 9 9 N 1.36934 * 120.00085 * 5.06139 * 7 2 1 10 10 C 1.48250 * 126.39675 * 354.83551 * 9 7 2 11 11 C 1.55290 * 106.99575 * 184.94045 * 10 9 7 12 12 C 1.53743 * 101.87478 * 22.48210 * 11 10 9 13 13 H 1.09001 * 111.30308 * 78.94325 * 12 11 10 14 14 C 1.52235 * 114.74937 * 207.21859 * 12 11 10 15 15 N 1.48915 * 105.76506 * 170.11500 * 14 12 11 16 16 C 1.34774 * 119.82268 * 127.75686 * 15 14 12 17 17 O 1.21619 * 120.00131 * 353.82131 * 16 15 14 18 18 C 1.47372 * 120.00154 * 173.81095 * 16 15 14 19 19 C 1.39324 * 120.34936 * 306.31844 * 18 16 15 20 20 C 1.38265 * 120.20398 * 179.97438 * 19 18 16 21 21 C 1.38057 * 120.88421 * 0.02562 * 20 19 18 22 22 C 1.38980 * 120.27046 * 0.02562 * 21 20 19 23 23 N 1.37796 * 133.37455 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.07678 * 359.97434 * 23 22 21 25 25 C 1.36557 * 109.84935 * 179.21430 * 23 22 21 26 26 C 1.34548 * 109.89764 * 0.69210 * 25 23 22 27 27 C 1.40665 * 119.51510 * 359.70221 * 22 21 20 28 28 C 1.46595 * 120.49154 * 307.42155 * 15 14 12 29 29 C 1.53950 * 110.57864 * 48.14341 * 28 15 14 30 30 C 1.45476 * 126.40025 * 174.85550 * 9 7 2 31 31 H 1.08992 * 109.26778 * 266.18664 * 30 9 7 32 32 H 0.97000 * 120.00326 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.95368 * 65.60173 * 10 9 7 34 34 H 1.08999 * 109.93305 * 304.26702 * 10 9 7 35 35 H 1.09009 * 110.95269 * 264.33317 * 11 10 9 36 36 H 1.08995 * 110.95754 * 140.64797 * 11 10 9 37 37 H 1.08999 * 110.07396 * 288.79977 * 14 12 11 38 38 H 1.09006 * 110.06601 * 50.37860 * 14 12 11 39 39 H 1.08003 * 119.89329 * 0.02562 * 19 18 16 40 40 H 1.08003 * 119.55872 * 180.02562 * 20 19 18 41 41 H 1.08005 * 119.86752 * 179.97438 * 21 20 19 42 42 H 1.07999 * 125.04900 * 180.08695 * 25 23 22 43 43 H 1.08001 * 126.50084 * 179.43434 * 26 25 23 44 44 H 1.08997 * 109.25849 * 287.85173 * 28 15 14 45 45 H 1.09003 * 109.25745 * 168.42367 * 28 15 14 46 46 H 1.09007 * 109.88436 * 189.48676 * 29 28 15 47 47 H 1.08998 * 109.94795 * 68.43930 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 2.3921 2.1073 -1.3947 5 1 1.5044 2.6198 0.8030 6 1 3.5965 1.4119 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0831 9 7 1.3295 -2.3858 -0.1036 10 6 -0.1432 -2.5554 -0.1161 11 6 -0.4242 -4.0827 -0.1231 12 6 0.8810 -4.6471 0.4613 13 1 0.9057 -4.5457 1.5463 14 6 1.2179 -6.0638 0.0172 15 7 2.6081 -6.3155 0.4878 16 6 2.8799 -7.4157 1.2173 17 8 1.9750 -8.1404 1.5850 18 6 4.2736 -7.7408 1.5693 19 6 5.2468 -7.8342 0.5768 20 6 6.5536 -8.1388 0.9104 21 6 6.9174 -8.3555 2.2245 22 6 5.9692 -8.2705 3.2370 23 7 6.0279 -8.4308 4.6044 24 1 6.8286 -8.6501 5.1060 25 6 4.7940 -8.2183 5.1495 26 6 3.9070 -7.9344 4.1785 27 6 4.6368 -7.9558 2.9141 28 6 3.6864 -5.3788 0.1575 29 6 3.2548 -3.9309 0.4532 30 6 1.9163 -3.7117 -0.2221 31 1 1.9973 -3.9762 -1.2763 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5629 -2.0966 -1.0113 34 1 -0.5771 -2.1021 0.7751 35 1 -0.5853 -4.4448 -1.1385 36 1 -1.2741 -4.3256 0.5147 37 1 0.5342 -6.7741 0.4820 38 1 1.1570 -6.1398 -1.0685 39 1 4.9798 -7.6673 -0.4564 40 1 7.2997 -8.2082 0.1327 41 1 7.9428 -8.5929 2.4665 42 1 4.5623 -8.2796 6.2026 43 1 2.8547 -7.7298 4.3093 44 1 3.9319 -5.4719 -0.9003 45 1 4.5671 -5.6201 0.7528 46 1 3.9913 -3.2351 0.0510 47 1 3.1558 -3.7847 1.5288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036827209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:26 Heat of formation + Delta-G solvation = 63.301903 kcal Electronic energy + Delta-G solvation = -29709.987187 eV Core-core repulsion = 25858.964393 eV Total energy + Delta-G solvation = -3851.022795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48954 -40.00527 -38.20484 -36.80776 -35.22419 -32.77721 -32.09402 -31.47141 -30.09507 -29.36329 -28.90655 -27.90244 -25.07015 -24.20670 -22.82407 -22.36254 -21.88906 -21.08825 -20.10091 -19.85680 -19.23887 -17.77981 -17.03178 -16.40318 -16.04615 -15.70940 -15.32210 -15.17776 -14.90030 -14.57041 -14.32148 -14.08557 -13.85053 -13.57690 -13.25018 -13.01415 -12.94552 -12.77036 -12.61003 -12.36838 -11.87696 -11.78835 -11.58595 -11.56347 -11.41820 -11.33023 -10.79976 -10.76185 -10.64509 -10.12521 -10.07762 -9.89674 -9.85494 -9.60231 -9.55460 -9.39092 -8.59332 -8.44466 -8.42017 -7.87070 -6.80092 -5.70176 -3.02419 0.68162 1.39292 2.53833 2.78571 2.93149 3.13215 3.40862 3.45821 3.48001 3.73130 4.42235 4.51301 4.61132 4.74541 4.94523 4.97288 5.11523 5.16418 5.20113 5.33195 5.37275 5.41818 5.53028 5.57937 5.64385 5.69459 5.72975 5.86692 5.90026 5.95364 6.08056 6.18897 6.22015 6.24670 6.27392 6.29444 6.40046 6.45690 6.52582 6.57591 6.66553 6.70568 6.88211 6.90806 7.12663 7.28950 7.56984 7.59470 7.64031 7.83328 8.26643 8.30637 9.21562 9.85423 10.54289 11.42915 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.003059 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.864188 B = 9151.992172 C = 9795.987482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.128 3.872 15 N -0.602 5.602 16 C 0.560 3.440 17 O -0.540 6.540 18 C -0.073 4.073 19 C -0.112 4.112 20 C -0.104 4.104 21 C -0.114 4.114 22 C 0.090 3.910 23 N -0.597 5.597 24 H 0.416 0.584 25 C 0.051 3.949 26 C -0.193 4.193 27 C -0.068 4.068 28 C 0.110 3.890 29 C -0.129 4.129 30 C 0.168 3.832 31 H 0.021 0.979 32 H 0.252 0.748 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.173 0.827 43 H 0.149 0.851 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.860 -18.195 5.318 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.007 3.993 15 N -0.335 5.335 16 C 0.348 3.652 17 O -0.418 6.418 18 C -0.076 4.076 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.017 4.017 23 N -0.200 5.200 24 H 0.252 0.748 25 C -0.074 4.074 26 C -0.218 4.218 27 C -0.073 4.073 28 C -0.013 4.013 29 C -0.168 4.168 30 C 0.059 3.941 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.190 0.810 43 H 0.166 0.834 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.395 -18.331 5.604 22.827 hybrid contribution 0.869 0.961 0.278 1.325 sum 13.263 -17.370 5.882 22.633 Atomic orbital electron populations 1.69951 1.04901 1.24982 1.56945 1.24795 0.95659 0.97596 1.02376 0.86150 0.78652 0.83823 0.77456 1.21686 1.21832 1.20683 1.19009 0.90708 0.82397 1.43208 0.90385 1.44245 1.01633 1.00126 1.85990 1.21531 0.83999 0.88120 1.00994 1.22720 0.95802 0.99500 0.99499 1.22631 0.97721 0.93377 1.00678 0.90203 1.21840 0.81275 0.97316 0.98885 1.48546 1.10232 1.22220 1.52489 1.18273 0.88277 0.80954 0.77658 1.90767 1.46889 1.50447 1.53677 1.19297 0.93408 1.02626 0.92317 1.21063 0.92284 1.01133 0.98724 1.20690 0.96051 1.00322 0.95231 1.20110 0.97742 1.04419 0.91255 1.18145 0.95379 1.04098 0.84055 1.41708 1.10642 1.62623 1.05058 0.74773 1.21887 0.83717 1.02866 0.98972 1.21780 0.99772 1.10215 0.89986 1.18935 0.92707 1.03265 0.92414 1.21883 0.89278 0.89638 1.00525 1.21893 0.99335 0.93774 1.01807 1.20646 0.91141 0.86868 0.95415 0.96186 0.93803 0.94117 0.93167 0.92325 0.92084 0.89216 0.91006 0.85258 0.85095 0.86033 0.81018 0.83361 0.91772 0.89900 0.90589 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.00 10.47 55.49 0.58 -26.42 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.99 29.56 -169.99 -5.02 16.97 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -6.14 9.88 -15.06 -0.15 -6.29 16 8 H 0.08 2.04 7.15 -52.48 -0.38 1.67 16 9 N -0.60 -14.92 3.35 -163.02 -0.55 -15.46 16 10 C 0.18 4.30 5.44 -1.86 -0.01 4.29 16 11 C -0.14 -2.56 6.53 -25.13 -0.16 -2.72 16 12 C -0.12 -2.25 2.84 -89.37 -0.25 -2.51 16 13 H 0.08 1.59 8.12 -51.93 -0.42 1.17 16 14 C 0.13 2.02 6.05 -3.10 -0.02 2.00 16 15 N -0.60 -9.27 3.01 -172.78 -0.52 -9.79 16 16 C 0.56 9.11 7.06 -12.54 -0.09 9.03 16 17 O -0.54 -10.34 16.47 5.26 0.09 -10.26 16 18 C -0.07 -1.02 4.53 -104.75 -0.47 -1.50 16 19 C -0.11 -1.26 7.83 -39.17 -0.31 -1.57 16 20 C -0.10 -0.95 9.99 -39.64 -0.40 -1.35 16 21 C -0.11 -1.05 10.05 -39.37 -0.40 -1.45 16 22 C 0.09 0.99 7.27 -83.99 -0.61 0.38 16 23 N -0.60 -5.00 6.06 -10.66 -0.06 -5.06 16 24 H 0.42 2.00 8.96 -40.82 -0.37 1.63 16 25 C 0.05 0.47 11.82 -16.75 -0.20 0.27 16 26 C -0.19 -2.45 10.95 -37.78 -0.41 -2.87 16 27 C -0.07 -0.93 6.17 -104.85 -0.65 -1.57 16 28 C 0.11 1.55 5.29 -3.49 -0.02 1.53 16 29 C -0.13 -2.25 5.43 -26.99 -0.15 -2.40 16 30 C 0.17 3.37 2.57 -67.98 -0.17 3.19 16 31 H 0.02 0.42 7.93 -51.93 -0.41 0.01 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.04 1.08 7.65 -51.93 -0.40 0.68 16 34 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 35 H 0.06 1.01 8.12 -51.92 -0.42 0.59 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.45 7.01 -51.93 -0.36 1.09 16 38 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 39 H 0.13 1.27 7.71 -52.48 -0.40 0.87 16 40 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.15 1.98 8.06 -52.49 -0.42 1.55 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.08 5.52 -51.93 -0.29 0.79 16 46 H 0.08 1.33 7.60 -51.92 -0.39 0.94 16 47 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -34.09 371.59 -11.19 -45.28 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.74 Total: 2.97 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -4.56 Total: -3.83 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.55 Total: -56.74 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.09 -11.19 -45.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036827209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.582 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds