Wall clock time and date at job start Sat Apr 11 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99494 * 2 1 4 4 H 1.48498 * 109.47540 * 275.00348 * 3 2 1 5 5 H 1.48505 * 109.46994 * 35.00461 * 3 2 1 6 6 H 1.48505 * 109.47201 * 155.00151 * 3 2 1 7 7 C 1.38804 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99915 * 185.06401 * 7 2 1 9 9 N 1.36940 * 120.00591 * 5.06469 * 7 2 1 10 10 C 1.47656 * 126.19403 * 354.95957 * 9 7 2 11 11 C 1.54642 * 106.93748 * 178.36571 * 10 9 7 12 12 C 1.56262 * 102.20636 * 335.91635 * 11 10 9 13 13 H 1.09003 * 112.61421 * 158.26856 * 12 11 10 14 14 C 1.51865 * 106.82149 * 282.54983 * 12 11 10 15 15 N 1.43517 * 116.04442 * 130.06512 * 14 12 11 16 16 C 1.34782 * 115.76879 * 180.58644 * 15 14 12 17 17 O 1.21620 * 119.99053 * 354.52920 * 16 15 14 18 18 C 1.47372 * 120.00426 * 174.53089 * 16 15 14 19 19 C 1.39309 * 120.34616 * 305.24530 * 18 16 15 20 20 C 1.38274 * 120.20340 * 180.02562 * 19 18 16 21 21 C 1.38057 * 120.88002 * 0.02562 * 20 19 18 22 22 C 1.38983 * 120.27208 * 0.02562 * 21 20 19 23 23 N 1.37799 * 133.37799 * 179.97438 * 22 21 20 24 24 H 0.96998 * 125.07064 * 0.02562 * 23 22 21 25 25 C 1.36549 * 109.85364 * 180.02562 * 23 22 21 26 26 C 1.34545 * 109.89554 * 0.02562 * 25 23 22 27 27 C 1.40670 * 119.51537 * 359.68203 * 22 21 20 28 28 C 1.44226 * 128.47412 * 0.55925 * 15 14 12 29 29 C 1.51857 * 112.74836 * 6.21307 * 28 15 14 30 30 C 1.46658 * 126.19970 * 174.98671 * 9 7 2 31 31 H 1.09000 * 108.98428 * 90.75293 * 30 9 7 32 32 H 0.96995 * 120.00673 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.96864 * 58.99105 * 10 9 7 34 34 H 1.08997 * 110.00302 * 297.75600 * 10 9 7 35 35 H 1.09002 * 110.85649 * 217.74027 * 11 10 9 36 36 H 1.09003 * 110.85618 * 94.10132 * 11 10 9 37 37 H 1.08997 * 108.16841 * 251.77354 * 14 12 11 38 38 H 1.09004 * 108.16796 * 8.36027 * 14 12 11 39 39 H 1.08009 * 119.90459 * 359.97438 * 19 18 16 40 40 H 1.07998 * 119.56207 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.86885 * 179.97438 * 21 20 19 42 42 H 1.07997 * 125.05040 * 180.02562 * 25 23 22 43 43 H 1.08001 * 126.49551 * 180.02562 * 26 25 23 44 44 H 1.08997 * 108.82952 * 245.36389 * 28 15 14 45 45 H 1.09001 * 108.82441 * 127.05366 * 28 15 14 46 46 H 1.09003 * 108.99306 * 203.59724 * 29 28 15 47 47 H 1.08997 * 109.00192 * 84.83557 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3918 2.1076 -1.3947 5 1 1.5043 2.6198 0.8032 6 1 3.5965 1.4122 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2039 0.0820 9 7 1.3297 -2.3857 -0.1058 10 6 -0.1376 -2.5495 -0.1206 11 6 -0.4206 -4.0596 -0.2971 12 6 0.8878 -4.5624 -0.9876 13 1 1.0450 -5.6333 -0.8584 14 6 0.7991 -4.1542 -2.4476 15 7 1.9444 -3.4747 -2.9826 16 6 1.8549 -3.1040 -4.2754 17 8 0.8909 -3.4370 -4.9379 18 6 2.9250 -2.2954 -4.8860 19 6 3.3127 -1.0889 -4.3075 20 6 4.3167 -0.3323 -4.8832 21 6 4.9501 -0.7543 -6.0350 22 6 4.5849 -1.9529 -6.6364 23 7 5.0217 -2.6192 -7.7608 24 1 5.7232 -2.3096 -8.3548 25 6 4.3194 -3.7802 -7.9139 26 6 3.4224 -3.9073 -6.9192 27 6 3.5695 -2.7368 -6.0592 28 6 3.1786 -3.1361 -2.3176 29 6 3.2680 -3.7135 -0.9159 30 6 1.9263 -3.7203 -0.2235 31 1 2.0575 -4.1394 0.7741 32 1 -0.4851 0.8399 0.0004 33 1 -0.5662 -1.9907 -0.9526 34 1 -0.5615 -2.1989 0.8204 35 1 -1.2854 -4.2197 -0.9410 36 1 -0.5603 -4.5438 0.6695 37 1 0.6283 -5.0519 -3.0417 38 1 -0.0679 -3.5043 -2.5667 39 1 2.8270 -0.7429 -3.4069 40 1 4.6087 0.6017 -4.4262 41 1 5.7319 -0.1502 -6.4711 42 1 4.4628 -4.4908 -8.7144 43 1 2.7290 -4.7235 -6.7799 44 1 3.2593 -2.0509 -2.2569 45 1 4.0122 -3.5161 -2.9084 46 1 3.9666 -3.1162 -0.3301 47 1 3.6413 -4.7358 -0.9763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036827210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:31 Heat of formation + Delta-G solvation = 69.338472 kcal Electronic energy + Delta-G solvation = -30894.404856 eV Core-core repulsion = 27043.643826 eV Total energy + Delta-G solvation = -3850.761030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29792 -40.12299 -38.11509 -36.55181 -34.89205 -32.92941 -31.90928 -31.77217 -29.80785 -29.19126 -28.78109 -27.58046 -25.21776 -24.21989 -22.96582 -22.58537 -21.68287 -20.96058 -20.05133 -19.76375 -18.06672 -17.50396 -16.75188 -16.37329 -16.04206 -15.66020 -15.36607 -15.03783 -14.73558 -14.43648 -14.26751 -13.94105 -13.85043 -13.51347 -13.14648 -12.99144 -12.76660 -12.61298 -12.39960 -12.06409 -11.72505 -11.51703 -11.36475 -11.32356 -11.25926 -11.10726 -10.88934 -10.70611 -10.65503 -10.14406 -9.88531 -9.79261 -9.71733 -9.65725 -9.56693 -9.25731 -8.57454 -8.18806 -7.90788 -7.62385 -6.79929 -5.70348 -3.02094 0.95264 1.68556 2.71469 3.04094 3.17391 3.38020 3.43049 3.46609 3.59657 4.02126 4.48738 4.71799 4.79827 5.03771 5.15188 5.17867 5.29124 5.33218 5.37284 5.41895 5.53463 5.58213 5.59932 5.62928 5.79456 5.85767 5.96446 5.98204 6.08909 6.11378 6.17780 6.31757 6.36519 6.40794 6.52551 6.54708 6.56063 6.63661 6.70319 6.72846 6.76025 6.80076 6.93870 7.15600 7.31947 7.47506 7.56100 7.66379 7.84171 7.87208 8.26014 8.67549 9.21391 9.84123 10.53400 11.42101 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012012 B = 0.004825 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.381883 B = 5801.649117 C = 7303.581108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.113 4.113 13 H 0.081 0.919 14 C 0.146 3.854 15 N -0.568 5.568 16 C 0.551 3.449 17 O -0.542 6.542 18 C -0.072 4.072 19 C -0.104 4.104 20 C -0.100 4.100 21 C -0.118 4.118 22 C 0.087 3.913 23 N -0.598 5.598 24 H 0.414 0.586 25 C 0.046 3.954 26 C -0.194 4.194 27 C -0.070 4.070 28 C 0.124 3.876 29 C -0.123 4.123 30 C 0.170 3.830 31 H 0.024 0.976 32 H 0.251 0.749 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.170 0.830 43 H 0.146 0.854 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.604 -7.538 -11.417 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.099 0.901 14 C 0.023 3.977 15 N -0.298 5.298 16 C 0.338 3.662 17 O -0.421 6.421 18 C -0.076 4.076 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.139 4.139 22 C -0.020 4.020 23 N -0.202 5.202 24 H 0.250 0.750 25 C -0.080 4.080 26 C -0.219 4.219 27 C -0.075 4.075 28 C 0.001 3.999 29 C -0.162 4.162 30 C 0.062 3.938 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.138 0.862 42 H 0.187 0.813 43 H 0.164 0.836 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.114 -7.488 -11.732 17.205 hybrid contribution 0.750 1.157 -0.186 1.391 sum 10.864 -6.331 -11.918 17.325 Atomic orbital electron populations 1.69947 1.04859 1.24906 1.56574 1.24759 0.95540 0.97341 1.02406 0.86292 0.78801 0.84315 0.77625 1.21521 1.21865 1.20620 1.18906 0.90630 0.82227 1.43278 0.90470 1.44349 1.01379 1.00068 1.85864 1.21310 0.84394 0.88446 1.00689 1.23324 0.95717 0.99947 0.99125 1.22440 0.98492 0.98584 0.93754 0.90094 1.20264 0.87640 0.96090 0.93662 1.46210 1.16566 1.56557 1.10505 1.18302 0.86097 0.79777 0.82028 1.90739 1.33404 1.55647 1.62319 1.19298 0.96985 0.96249 0.95068 1.21350 0.97028 0.93733 1.00218 1.20768 0.96224 0.99877 0.95055 1.20077 1.02228 0.94360 0.97242 1.18117 0.98340 0.95525 0.89987 1.41655 1.35149 1.19535 1.23872 0.74989 1.21798 0.95463 0.89682 1.01032 1.21719 1.03435 1.00039 0.96695 1.18916 0.97326 0.95976 0.95327 1.20858 0.84022 1.01704 0.93316 1.21232 0.99617 1.00055 0.95285 1.20236 0.90679 0.87870 0.94992 0.95880 0.93816 0.93177 0.94338 0.91944 0.92311 0.93306 0.91588 0.84018 0.85107 0.86246 0.81310 0.83637 0.90165 0.93085 0.90608 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 10.43 55.49 0.58 -25.68 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.90 21.21 29.56 -169.99 -5.02 16.18 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.22 -5.70 8.80 -15.06 -0.13 -5.83 16 8 H 0.08 1.90 6.97 -52.48 -0.37 1.53 16 9 N -0.59 -14.00 3.04 -164.18 -0.50 -14.50 16 10 C 0.18 4.17 4.83 -2.54 -0.01 4.16 16 11 C -0.14 -2.64 6.14 -24.12 -0.15 -2.79 16 12 C -0.11 -1.98 3.80 -88.93 -0.34 -2.31 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.15 2.78 4.61 -6.20 -0.03 2.75 16 15 N -0.57 -10.89 3.19 -180.47 -0.58 -11.46 16 16 C 0.55 11.09 6.89 -12.54 -0.09 11.00 16 17 O -0.54 -12.29 16.68 5.26 0.09 -12.21 16 18 C -0.07 -1.30 4.57 -104.76 -0.48 -1.78 16 19 C -0.10 -1.76 7.98 -39.17 -0.31 -2.07 16 20 C -0.10 -1.39 9.99 -39.63 -0.40 -1.79 16 21 C -0.12 -1.46 10.05 -39.37 -0.40 -1.86 16 22 C 0.09 1.16 7.27 -83.99 -0.61 0.55 16 23 N -0.60 -5.97 6.06 -10.66 -0.06 -6.04 16 24 H 0.41 2.61 8.96 -40.82 -0.37 2.24 16 25 C 0.05 0.47 11.82 -16.76 -0.20 0.27 16 26 C -0.19 -2.72 10.95 -37.78 -0.41 -3.13 16 27 C -0.07 -1.13 6.17 -104.85 -0.65 -1.78 16 28 C 0.12 2.18 4.55 -5.83 -0.03 2.15 16 29 C -0.12 -2.09 5.12 -28.32 -0.15 -2.24 16 30 C 0.17 3.30 2.93 -68.34 -0.20 3.10 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.05 1.35 7.00 -51.93 -0.36 0.99 16 34 H 0.04 1.01 7.72 -51.93 -0.40 0.61 16 35 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.88 7.97 -51.93 -0.41 0.47 16 38 H 0.07 1.43 6.64 -51.93 -0.34 1.09 16 39 H 0.14 2.67 6.78 -52.48 -0.36 2.31 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 44 H 0.08 1.54 4.76 -51.93 -0.25 1.29 16 45 H 0.05 0.81 7.66 -51.93 -0.40 0.42 16 46 H 0.08 1.29 7.37 -51.93 -0.38 0.91 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -32.63 364.99 -11.22 -43.86 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.56 Total: 6.12 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -4.67 Total: -1.78 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.56 Total: -57.68 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.63 -11.22 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036827210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.195 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds