Wall clock time and date at job start Sat Apr 11 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48506 * 109.46879 * 269.99589 * 3 2 1 5 5 H 1.48501 * 109.47447 * 29.99569 * 3 2 1 6 6 H 1.48504 * 109.47017 * 149.99912 * 3 2 1 7 7 C 1.38807 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99777 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.46861 * 125.33851 * 0.02796 * 9 7 2 11 11 C 1.54470 * 106.65540 * 195.40626 * 10 9 7 12 12 C 1.53386 * 102.53863 * 332.25993 * 11 10 9 13 13 H 1.08994 * 105.68362 * 278.46059 * 12 11 10 14 14 C 1.49269 * 114.29144 * 161.96933 * 12 11 10 15 15 N 1.45645 * 114.67633 * 259.00812 * 14 12 11 16 16 C 1.34780 * 120.30353 * 143.50501 * 15 14 12 17 17 O 1.21597 * 120.00336 * 177.41923 * 16 15 14 18 18 C 1.47502 * 120.00191 * 357.42131 * 16 15 14 19 19 C 1.41206 * 126.36885 * 29.84181 * 18 16 15 20 20 C 1.37999 * 106.86136 * 179.84169 * 19 18 16 21 21 C 1.41382 * 131.98096 * 180.02562 * 20 19 18 22 22 C 1.35743 * 119.33175 * 180.40216 * 21 20 19 23 23 C 1.40828 * 119.71841 * 359.97438 * 22 21 20 24 24 C 1.34541 * 120.58100 * 0.02562 * 23 22 21 25 25 N 1.37432 * 120.74755 * 0.02562 * 24 23 22 26 26 C 1.35128 * 131.28694 * 179.97438 * 25 24 23 27 27 C 1.46820 * 119.39312 * 323.52724 * 15 14 12 28 28 C 1.52964 * 107.39153 * 55.01817 * 27 15 14 29 29 C 1.48008 * 125.33423 * 179.72117 * 9 7 2 30 30 H 1.09009 * 110.21364 * 303.19842 * 29 9 7 31 31 H 0.97004 * 119.99997 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.02071 * 314.70688 * 10 9 7 33 33 H 1.09000 * 110.02447 * 76.10420 * 10 9 7 34 34 H 1.09001 * 110.79208 * 90.52139 * 11 10 9 35 35 H 1.09004 * 110.79167 * 213.99679 * 11 10 9 36 36 H 1.09003 * 108.44121 * 20.35573 * 14 12 11 37 37 H 1.08996 * 108.43968 * 137.66012 * 14 12 11 38 38 H 1.07995 * 126.56424 * 0.02562 * 19 18 16 39 39 H 1.08004 * 120.33707 * 0.40484 * 21 20 19 40 40 H 1.08000 * 120.14275 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.70871 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.62453 * 179.97438 * 24 23 22 43 43 H 1.07991 * 125.61174 * 0.02562 * 26 25 24 44 44 H 1.09004 * 109.87011 * 174.48532 * 27 15 14 45 45 H 1.08996 * 109.87715 * 295.47450 * 27 15 14 46 46 H 1.09001 * 109.38472 * 58.68057 * 28 27 15 47 47 H 1.09001 * 109.38465 * 178.46648 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1368 -2.5246 -0.0006 11 6 -0.4452 -3.9861 0.3930 12 6 0.8041 -4.7323 -0.0919 13 1 0.6538 -4.8963 -1.1589 14 6 0.9877 -6.0828 0.5170 15 7 1.9645 -6.1355 1.5961 16 6 1.7598 -6.9370 2.6602 17 8 2.6006 -7.0123 3.5354 18 6 0.5158 -7.7228 2.7631 19 6 -0.2500 -8.2231 1.6874 20 6 -1.3209 -8.8972 2.2379 21 6 -2.4030 -9.5931 1.6515 22 6 -3.3368 -10.1669 2.4523 23 6 -3.2159 -10.0625 3.8515 24 6 -2.1832 -9.3985 4.4017 25 7 -1.2261 -8.8085 3.6113 26 6 -0.1192 -8.1016 3.9290 27 6 3.1740 -5.3072 1.5143 28 6 2.7239 -3.8595 1.3113 29 6 1.9431 -3.7331 -0.0048 30 1 2.6060 -3.8398 -0.8636 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5760 -1.8416 0.7267 33 1 -0.5305 -2.3149 -0.9951 34 1 -0.5576 -4.0805 1.4731 35 1 -1.3355 -4.3461 -0.1227 36 1 0.0265 -6.4196 0.9052 37 1 1.3006 -6.7741 -0.2654 38 1 -0.0366 -8.1039 0.6355 39 1 -2.4857 -9.6675 0.5772 40 1 -4.1690 -10.7012 2.0183 41 1 -3.9588 -10.5194 4.4885 42 1 -2.1059 -9.3276 5.4766 43 1 0.2140 -7.8712 4.9301 44 1 3.7441 -5.3916 2.4396 45 1 3.7863 -5.6276 0.6715 46 1 2.0863 -3.5588 2.1427 47 1 3.5988 -3.2105 1.2733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036833299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:51 Heat of formation + Delta-G solvation = 87.117184 kcal Electronic energy + Delta-G solvation = -29664.136119 eV Core-core repulsion = 25814.146032 eV Total energy + Delta-G solvation = -3849.990087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.43363 -40.02170 -38.14942 -36.60577 -35.24092 -33.42316 -32.63879 -31.88766 -30.21198 -29.37156 -28.26451 -27.86121 -25.44188 -24.27641 -23.57234 -22.96946 -21.84525 -21.69763 -20.21487 -19.53378 -18.15788 -17.65714 -16.92872 -16.83290 -16.48771 -15.83932 -15.66627 -15.12413 -15.01034 -14.76500 -14.62909 -14.40058 -14.15000 -13.74972 -13.29967 -12.96629 -12.86125 -12.70816 -12.36451 -12.20887 -12.09912 -11.90900 -11.67867 -11.49285 -11.40462 -11.28365 -10.91299 -10.80257 -10.68740 -10.60130 -10.08894 -9.99080 -9.91808 -9.62389 -9.53207 -9.41679 -8.72619 -8.58893 -8.30420 -7.57702 -6.80235 -5.65001 -3.02084 0.52995 1.13988 2.09434 2.42286 3.20528 3.25239 3.41723 3.46909 3.48688 3.52939 4.23919 4.47848 4.51039 4.56097 4.65616 4.82778 4.97899 5.01416 5.15715 5.26541 5.30751 5.33304 5.47143 5.52534 5.56407 5.61144 5.68609 5.78565 5.85837 5.92378 5.98686 6.02279 6.04051 6.07551 6.13304 6.31553 6.39837 6.44799 6.52221 6.61593 6.64638 6.71052 6.83496 7.00348 7.02834 7.16143 7.57665 7.66387 7.68443 7.88526 8.34528 8.39512 9.25934 9.86088 10.50842 11.42468 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.002871 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.851060 B = 9748.988998 C =10489.496772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.167 3.833 11 C -0.134 4.134 12 C -0.108 4.108 13 H 0.064 0.936 14 C 0.116 3.884 15 N -0.591 5.591 16 C 0.586 3.414 17 O -0.551 6.551 18 C -0.160 4.160 19 C -0.167 4.167 20 C 0.027 3.973 21 C -0.074 4.074 22 C -0.136 4.136 23 C -0.138 4.138 24 C 0.043 3.957 25 N -0.342 5.342 26 C 0.014 3.986 27 C 0.111 3.889 28 C -0.137 4.137 29 C 0.172 3.828 30 H 0.041 0.959 31 H 0.251 0.749 32 H 0.082 0.918 33 H 0.017 0.983 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.161 0.839 43 H 0.179 0.821 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 -22.079 4.618 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.042 3.958 11 C -0.173 4.173 12 C -0.128 4.128 13 H 0.082 0.918 14 C -0.007 4.007 15 N -0.322 5.322 16 C 0.375 3.625 17 O -0.430 6.430 18 C -0.167 4.167 19 C -0.191 4.191 20 C -0.077 4.077 21 C -0.092 4.092 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.075 4.075 25 N -0.005 5.005 26 C -0.119 4.119 27 C -0.011 4.011 28 C -0.177 4.177 29 C 0.065 3.935 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.177 0.823 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.178 0.822 43 H 0.196 0.804 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.304 -21.917 5.251 23.402 hybrid contribution 0.298 0.992 -0.135 1.045 sum -6.006 -20.925 5.115 22.363 Atomic orbital electron populations 1.69932 1.04844 1.24751 1.57543 1.24779 0.95704 0.97613 1.02538 0.86125 0.78591 0.83608 0.77493 1.21720 1.21767 1.20710 1.19021 0.90464 0.82357 1.43029 0.90515 1.44713 1.01521 0.99432 1.86793 1.21376 0.84501 0.90174 0.99732 1.22667 0.95336 0.99163 1.00134 1.20739 0.97825 0.93824 1.00395 0.91784 1.21042 0.93523 0.97025 0.89116 1.47545 1.22102 1.42129 1.20432 1.17413 0.85079 0.78832 0.81154 1.90746 1.45766 1.66646 1.39878 1.19539 0.98190 1.05807 0.93195 1.21486 0.94979 1.03568 0.99074 1.18834 1.00204 1.06762 0.81927 1.20677 0.91939 0.95985 1.00643 1.20930 0.99990 1.01632 0.93114 1.20715 0.98038 1.01018 0.96009 1.21674 0.90245 0.98748 0.96854 1.41307 1.17240 1.34804 1.07178 1.21930 0.88511 1.01596 0.99909 1.21701 0.86038 0.90932 1.02428 1.22483 1.01218 0.93404 1.00642 1.20562 0.92425 0.86040 0.94460 0.94158 0.93876 0.89977 0.96494 0.92619 0.92196 0.88572 0.92603 0.82321 0.83895 0.84917 0.83790 0.82171 0.80370 0.89404 0.91698 0.91435 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.22 55.49 0.57 -26.43 16 2 C -0.01 -0.30 5.48 -17.43 -0.10 -0.40 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.04 9.83 -15.06 -0.15 -6.19 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.97 3.04 -163.71 -0.50 -15.47 16 10 C 0.17 4.03 5.54 -3.07 -0.02 4.01 16 11 C -0.13 -2.51 6.37 -25.76 -0.16 -2.67 16 12 C -0.11 -1.82 2.45 -92.88 -0.23 -2.05 16 13 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 14 C 0.12 1.63 4.61 -6.34 -0.03 1.60 16 15 N -0.59 -9.29 3.00 -177.58 -0.53 -9.82 16 16 C 0.59 9.68 7.63 -12.48 -0.10 9.58 16 17 O -0.55 -10.60 16.41 5.28 0.09 -10.51 16 18 C -0.16 -2.24 5.57 -105.06 -0.59 -2.83 16 19 C -0.17 -2.00 8.51 -38.54 -0.33 -2.33 16 20 C 0.03 0.30 6.70 -84.00 -0.56 -0.27 16 21 C -0.07 -0.63 10.11 -39.28 -0.40 -1.02 16 22 C -0.14 -0.96 10.07 -39.50 -0.40 -1.36 16 23 C -0.14 -0.91 9.97 -39.91 -0.40 -1.31 16 24 C 0.04 0.34 10.89 -16.35 -0.18 0.16 16 25 N -0.34 -3.73 2.92 -60.42 -0.18 -3.90 16 26 C 0.01 0.17 11.49 -16.17 -0.19 -0.01 16 27 C 0.11 1.79 6.43 -3.89 -0.02 1.77 16 28 C -0.14 -2.59 5.19 -26.47 -0.14 -2.72 16 29 C 0.17 3.45 3.43 -67.44 -0.23 3.22 16 30 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.08 2.25 6.41 -51.93 -0.33 1.92 16 33 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.28 4.13 -51.93 -0.21 1.06 16 37 H 0.06 0.66 7.83 -51.93 -0.41 0.26 16 38 H 0.16 1.62 6.02 -52.49 -0.32 1.31 16 39 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 44 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.07 1.33 8.11 -51.93 -0.42 0.90 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -33.67 369.54 -10.88 -44.55 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.67 Total: 1.65 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -4.20 Total: -2.81 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.64 Total: -55.62 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.67 -10.88 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036833299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.667 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds