Wall clock time and date at job start Sat Apr 11 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48506 * 109.46879 * 269.99589 * 3 2 1 5 5 H 1.48501 * 109.47447 * 29.99569 * 3 2 1 6 6 H 1.48504 * 109.47017 * 149.99912 * 3 2 1 7 7 C 1.38807 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99777 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.46861 * 125.33851 * 0.02796 * 9 7 2 11 11 C 1.54470 * 106.65540 * 195.40626 * 10 9 7 12 12 C 1.53386 * 102.53863 * 332.25993 * 11 10 9 13 13 H 1.08994 * 105.68362 * 278.46059 * 12 11 10 14 14 C 1.49269 * 114.29144 * 161.96933 * 12 11 10 15 15 N 1.45645 * 114.67633 * 259.00812 * 14 12 11 16 16 C 1.34780 * 120.30353 * 143.50501 * 15 14 12 17 17 O 1.21597 * 120.00336 * 177.41923 * 16 15 14 18 18 C 1.47502 * 120.00191 * 357.42131 * 16 15 14 19 19 C 1.41206 * 126.36885 * 29.84181 * 18 16 15 20 20 C 1.37999 * 106.86136 * 179.84169 * 19 18 16 21 21 C 1.41382 * 131.98096 * 180.02562 * 20 19 18 22 22 C 1.35743 * 119.33175 * 180.40216 * 21 20 19 23 23 C 1.40828 * 119.71841 * 359.97438 * 22 21 20 24 24 C 1.34541 * 120.58100 * 0.02562 * 23 22 21 25 25 N 1.37432 * 120.74755 * 0.02562 * 24 23 22 26 26 C 1.35128 * 131.28694 * 179.97438 * 25 24 23 27 27 C 1.46820 * 119.39312 * 323.52724 * 15 14 12 28 28 C 1.52964 * 107.39153 * 55.01817 * 27 15 14 29 29 C 1.48008 * 125.33423 * 179.72117 * 9 7 2 30 30 H 1.09009 * 110.21364 * 303.19842 * 29 9 7 31 31 H 0.97004 * 119.99997 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.02071 * 314.70688 * 10 9 7 33 33 H 1.09000 * 110.02447 * 76.10420 * 10 9 7 34 34 H 1.09001 * 110.79208 * 90.52139 * 11 10 9 35 35 H 1.09004 * 110.79167 * 213.99679 * 11 10 9 36 36 H 1.09003 * 108.44121 * 20.35573 * 14 12 11 37 37 H 1.08996 * 108.43968 * 137.66012 * 14 12 11 38 38 H 1.07995 * 126.56424 * 0.02562 * 19 18 16 39 39 H 1.08004 * 120.33707 * 0.40484 * 21 20 19 40 40 H 1.08000 * 120.14275 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.70871 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.62453 * 179.97438 * 24 23 22 43 43 H 1.07991 * 125.61174 * 0.02562 * 26 25 24 44 44 H 1.09004 * 109.87011 * 174.48532 * 27 15 14 45 45 H 1.08996 * 109.87715 * 295.47450 * 27 15 14 46 46 H 1.09001 * 109.38472 * 58.68057 * 28 27 15 47 47 H 1.09001 * 109.38465 * 178.46648 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1368 -2.5246 -0.0006 11 6 -0.4452 -3.9861 0.3930 12 6 0.8041 -4.7323 -0.0919 13 1 0.6538 -4.8963 -1.1589 14 6 0.9877 -6.0828 0.5170 15 7 1.9645 -6.1355 1.5961 16 6 1.7598 -6.9370 2.6602 17 8 2.6006 -7.0123 3.5354 18 6 0.5158 -7.7228 2.7631 19 6 -0.2500 -8.2231 1.6874 20 6 -1.3209 -8.8972 2.2379 21 6 -2.4030 -9.5931 1.6515 22 6 -3.3368 -10.1669 2.4523 23 6 -3.2159 -10.0625 3.8515 24 6 -2.1832 -9.3985 4.4017 25 7 -1.2261 -8.8085 3.6113 26 6 -0.1192 -8.1016 3.9290 27 6 3.1740 -5.3072 1.5143 28 6 2.7239 -3.8595 1.3113 29 6 1.9431 -3.7331 -0.0048 30 1 2.6060 -3.8398 -0.8636 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5760 -1.8416 0.7267 33 1 -0.5305 -2.3149 -0.9951 34 1 -0.5576 -4.0805 1.4731 35 1 -1.3355 -4.3461 -0.1227 36 1 0.0265 -6.4196 0.9052 37 1 1.3006 -6.7741 -0.2654 38 1 -0.0366 -8.1039 0.6355 39 1 -2.4857 -9.6675 0.5772 40 1 -4.1690 -10.7012 2.0183 41 1 -3.9588 -10.5194 4.4885 42 1 -2.1059 -9.3276 5.4766 43 1 0.2140 -7.8712 4.9301 44 1 3.7441 -5.3916 2.4396 45 1 3.7863 -5.6276 0.6715 46 1 2.0863 -3.5588 2.1427 47 1 3.5988 -3.2105 1.2733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036833299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:50 Heat of formation + Delta-G solvation = 68.669394 kcal Electronic energy + Delta-G solvation = -29664.936075 eV Core-core repulsion = 25814.146032 eV Total energy + Delta-G solvation = -3850.790043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.20855 -41.32496 -39.61522 -37.31553 -36.76641 -34.46767 -34.23572 -33.25207 -31.50475 -30.72217 -29.75603 -28.67971 -27.00903 -25.64980 -24.86422 -23.97448 -22.85221 -22.66589 -22.06385 -20.75806 -19.39755 -18.85698 -18.48699 -17.84134 -17.39498 -16.80531 -16.78101 -16.71184 -16.20272 -15.95935 -15.83393 -15.63415 -15.24037 -15.03968 -14.52184 -14.33309 -14.25900 -14.00704 -13.80701 -13.64951 -13.18149 -13.07273 -12.98302 -12.79136 -12.64814 -12.60071 -12.39056 -12.36587 -12.13144 -12.01031 -11.65227 -11.59090 -11.45105 -11.27407 -11.02444 -10.87263 -10.68482 -9.70113 -9.45696 -8.84373 -8.29209 -7.78194 -5.16603 -0.11365 0.42168 1.14485 1.45312 1.46767 1.55153 1.65154 2.08028 2.39993 2.50315 2.63796 3.34607 3.53818 3.57900 3.67505 3.76893 3.92382 3.94732 4.04534 4.07208 4.18056 4.24631 4.29312 4.34429 4.46545 4.47391 4.57157 4.60480 4.65781 4.76298 4.80089 4.88999 4.91148 4.93627 5.00207 5.09721 5.17024 5.28660 5.35110 5.37158 5.46562 5.48853 5.56878 5.59963 5.70817 5.74228 5.84193 5.94664 6.28346 6.30760 6.45054 7.14481 7.16335 7.82582 8.45229 9.27716 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.002871 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.851060 B = 9748.988998 C =10489.496772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.227 4.227 8 H 0.081 0.919 9 N -0.620 5.620 10 C 0.172 3.828 11 C -0.118 4.118 12 C -0.098 4.098 13 H 0.082 0.918 14 C 0.119 3.881 15 N -0.593 5.593 16 C 0.584 3.416 17 O -0.590 6.590 18 C -0.186 4.186 19 C -0.180 4.180 20 C 0.021 3.979 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.129 4.129 24 C 0.019 3.981 25 N -0.342 5.342 26 C -0.004 4.004 27 C 0.120 3.880 28 C -0.124 4.124 29 C 0.166 3.834 30 H 0.047 0.953 31 H 0.244 0.756 32 H 0.040 0.960 33 H -0.010 1.010 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.175 0.825 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.179 0.821 42 H 0.184 0.816 43 H 0.182 0.818 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.033 0.967 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -25.085 4.019 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.357 4.357 8 H 0.099 0.901 9 N -0.345 5.345 10 C 0.046 3.954 11 C -0.157 4.157 12 C -0.118 4.118 13 H 0.100 0.900 14 C -0.003 4.003 15 N -0.323 5.323 16 C 0.374 3.626 17 O -0.472 6.472 18 C -0.194 4.194 19 C -0.203 4.203 20 C -0.084 4.084 21 C -0.112 4.112 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.098 4.098 25 N -0.006 5.006 26 C -0.138 4.138 27 C -0.002 4.002 28 C -0.164 4.164 29 C 0.060 3.940 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.008 0.992 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.192 0.808 39 H 0.182 0.818 40 H 0.181 0.819 41 H 0.196 0.804 42 H 0.201 0.799 43 H 0.200 0.800 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.052 0.948 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.542 -24.960 4.642 26.484 hybrid contribution 0.549 1.820 0.099 1.904 sum -6.992 -23.139 4.741 24.633 Atomic orbital electron populations 1.70177 1.06151 1.24791 1.59017 1.25585 0.96579 1.00815 1.03272 0.85133 0.77617 0.79550 0.77401 1.21313 1.22378 1.19589 1.19377 0.90938 0.83654 1.41688 0.90147 1.45011 1.02160 1.00748 1.86551 1.21128 0.84161 0.93043 0.97033 1.22504 0.97642 0.95580 0.99962 1.20707 0.95142 0.94102 1.01807 0.89970 1.21168 0.94119 0.95590 0.89457 1.47609 1.22141 1.41731 1.20843 1.17823 0.85522 0.78761 0.80460 1.90710 1.47220 1.68120 1.41134 1.19412 0.97957 1.07196 0.94822 1.21611 0.95156 1.04245 0.99328 1.19255 1.00554 1.06419 0.82141 1.21015 0.91651 0.96444 1.02105 1.21428 0.99936 1.00040 0.93310 1.21251 0.97711 0.99371 0.96525 1.22308 0.90205 0.99205 0.98128 1.41474 1.17123 1.34296 1.07669 1.21982 0.89447 1.02525 0.99844 1.21564 0.86571 0.89030 1.03066 1.22259 0.99976 0.95386 0.98772 1.20832 0.93680 0.84663 0.94860 0.93477 0.94670 0.94156 0.99170 0.93419 0.89103 0.87285 0.89027 0.80788 0.81775 0.81915 0.80393 0.79877 0.80042 0.90244 0.89121 0.94765 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.99 10.22 21.65 0.22 -57.77 16 2 C -0.07 -4.05 5.48 84.86 0.47 -3.59 16 3 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.23 -12.77 9.83 84.03 0.83 -11.94 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.62 -31.68 3.04 -671.86 -2.04 -33.73 16 10 C 0.17 8.56 5.54 86.81 0.48 9.04 16 11 C -0.12 -4.34 6.37 31.22 0.20 -4.14 16 12 C -0.10 -3.13 2.45 -12.26 -0.03 -3.16 16 13 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 14 C 0.12 3.03 4.61 85.35 0.39 3.43 16 15 N -0.59 -18.04 3.00 -833.99 -2.50 -20.54 16 16 C 0.58 19.28 7.63 86.69 0.66 19.94 16 17 O -0.59 -23.27 16.41 -4.02 -0.07 -23.33 16 18 C -0.19 -5.15 5.57 -20.15 -0.11 -5.26 16 19 C -0.18 -4.00 8.51 22.94 0.20 -3.80 16 20 C 0.02 0.43 6.70 38.90 0.26 0.69 16 21 C -0.09 -1.28 10.11 22.47 0.23 -1.06 16 22 C -0.13 -1.25 10.07 22.32 0.22 -1.03 16 23 C -0.13 -1.19 9.97 22.06 0.22 -0.97 16 24 C 0.02 0.25 10.89 82.97 0.90 1.15 16 25 N -0.34 -6.96 2.92 -345.08 -1.01 -7.97 16 26 C 0.00 -0.10 11.49 84.14 0.97 0.87 16 27 C 0.12 3.80 6.43 86.31 0.55 4.36 16 28 C -0.12 -4.72 5.19 30.77 0.16 -4.56 16 29 C 0.17 6.56 3.43 44.48 0.15 6.72 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 31 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.04 2.33 6.41 -2.38 -0.02 2.32 16 33 H -0.01 -0.53 8.12 -2.39 -0.02 -0.55 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.11 2.61 4.13 -2.39 -0.01 2.60 16 37 H 0.09 1.78 7.83 -2.39 -0.02 1.76 16 38 H 0.17 3.06 6.02 -2.91 -0.02 3.04 16 39 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 41 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 42 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 43 H 0.18 4.06 8.06 -2.92 -0.02 4.04 16 44 H 0.08 2.67 7.00 -2.39 -0.02 2.65 16 45 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.06 2.35 8.11 -2.39 -0.02 2.33 16 Total: -1.00 -77.74 369.54 4.36 -73.38 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.98 Total: 14.51 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.75 Total: 6.69 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -5.33 Total: -120.01 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.07 Total: -23.33 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -77.74 4.36 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036833299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.053 kcal (2) G-P(sol) polarization free energy of solvation -77.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds