Wall clock time and date at job start Sat Apr 11 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99704 * 2 1 4 4 H 1.48500 * 109.47345 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.46719 * 239.99866 * 3 2 1 6 6 H 1.48496 * 109.47343 * 119.99917 * 3 2 1 7 7 C 1.38806 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00405 * 27.31449 * 7 2 1 9 9 N 1.36939 * 120.00108 * 207.31110 * 7 2 1 10 10 C 1.48162 * 126.40351 * 2.45360 * 9 7 2 11 11 C 1.55282 * 107.04099 * 175.03890 * 10 9 7 12 12 C 1.53743 * 101.84732 * 337.52189 * 11 10 9 13 13 H 1.09002 * 111.30745 * 281.04890 * 12 11 10 14 14 C 1.52237 * 114.74694 * 153.64350 * 12 11 10 15 15 N 1.48167 * 105.93361 * 190.58386 * 14 12 11 16 16 C 1.34777 * 119.16686 * 231.32758 * 15 14 12 17 17 O 1.21596 * 120.00262 * 355.47930 * 16 15 14 18 18 C 1.47503 * 119.99762 * 175.48321 * 16 15 14 19 19 C 1.41199 * 126.37312 * 43.28119 * 18 16 15 20 20 C 1.37990 * 106.86421 * 179.97438 * 19 18 16 21 21 C 1.41383 * 131.98386 * 180.02562 * 20 19 18 22 22 C 1.35746 * 119.33715 * 180.02562 * 21 20 19 23 23 C 1.40823 * 119.71458 * 359.89264 * 22 21 20 24 24 C 1.34543 * 120.58826 * 0.06904 * 23 22 21 25 25 N 1.37444 * 120.74039 * 359.97438 * 24 23 22 26 26 C 1.35126 * 131.28641 * 180.29017 * 25 24 23 27 27 C 1.46595 * 121.14613 * 51.13203 * 15 14 12 28 28 C 1.53951 * 110.57977 * 312.39353 * 27 15 14 29 29 C 1.45462 * 126.40551 * 182.14468 * 9 7 2 30 30 H 1.08995 * 109.27106 * 93.83718 * 29 9 7 31 31 H 0.97002 * 119.99831 * 174.97378 * 1 2 3 32 32 H 1.09001 * 109.92134 * 294.38806 * 10 9 7 33 33 H 1.09001 * 109.91923 * 55.48943 * 10 9 7 34 34 H 1.09007 * 110.95657 * 95.65939 * 11 10 9 35 35 H 1.08999 * 110.95486 * 219.37755 * 11 10 9 36 36 H 1.09000 * 110.06860 * 309.63305 * 14 12 11 37 37 H 1.08999 * 110.06982 * 71.21330 * 14 12 11 38 38 H 1.08001 * 126.56295 * 359.97438 * 19 18 16 39 39 H 1.08004 * 120.33137 * 359.95959 * 21 20 19 40 40 H 1.07991 * 120.14189 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.70806 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.63333 * 179.97438 * 24 23 22 43 43 H 1.07995 * 125.61469 * 359.96296 * 26 25 24 44 44 H 1.09000 * 109.25649 * 192.10666 * 27 15 14 45 45 H 1.09006 * 109.25492 * 72.67636 * 27 15 14 46 46 H 1.09002 * 109.88008 * 291.59564 * 28 27 15 47 47 H 1.08994 * 109.88401 * 170.51240 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 1.5606 -2.0855 -0.4283 9 7 3.2651 -1.2680 0.5447 10 6 3.9932 -0.1637 1.2123 11 6 5.3142 -0.7606 1.7689 12 6 4.9658 -2.2542 1.8747 13 1 4.3699 -2.4599 2.7640 14 6 6.1590 -3.1951 1.7814 15 7 5.5929 -4.5573 1.6425 16 6 6.0200 -5.5335 2.4678 17 8 6.9176 -5.3123 3.2578 18 6 5.3986 -6.8701 2.4129 19 6 5.0654 -7.5912 1.2455 20 6 4.5100 -8.7854 1.6576 21 6 3.9989 -9.8892 0.9369 22 6 3.5023 -10.9544 1.6161 23 6 3.5047 -10.9473 3.0243 24 6 3.9936 -9.8933 3.7027 25 7 4.5008 -8.8032 3.0369 26 6 5.0410 -7.6517 3.4932 27 6 4.5773 -4.8566 0.6286 28 6 3.4623 -3.7952 0.6498 29 6 4.1301 -2.4369 0.5809 30 1 4.7980 -2.4171 -0.2802 31 1 -0.4850 -0.8368 -0.0736 32 1 4.2158 0.6234 0.4918 33 1 3.3914 0.2386 2.0273 34 1 6.1379 -0.6008 1.0730 35 1 5.5476 -0.3443 2.7488 36 1 6.7624 -2.9485 0.9079 37 1 6.7625 -3.1247 2.6864 38 1 5.2163 -7.2697 0.2256 39 1 4.0026 -9.8844 -0.1431 40 1 3.1082 -11.8043 1.0787 41 1 3.1099 -11.7951 3.5645 42 1 3.9874 -9.9040 4.7826 43 1 5.1688 -7.3853 4.5320 44 1 4.1448 -5.8364 0.8312 45 1 5.0446 -4.8673 -0.3561 46 1 2.8879 -3.8795 1.5723 47 1 2.8061 -3.9297 -0.2101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036833300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:55 Heat of formation + Delta-G solvation = 95.730576 kcal Electronic energy + Delta-G solvation = -29444.581025 eV Core-core repulsion = 25594.964442 eV Total energy + Delta-G solvation = -3849.616582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48782 -40.13493 -38.38593 -36.65379 -35.50358 -33.45315 -32.76018 -31.59945 -30.80127 -29.80567 -28.35616 -27.94499 -25.42444 -24.16626 -23.30138 -22.78538 -22.18891 -21.71215 -20.51820 -19.70103 -18.86916 -17.83249 -17.26595 -16.72005 -16.65375 -16.00804 -15.55564 -15.30794 -15.09336 -15.05054 -14.78721 -14.58905 -14.08698 -13.86825 -13.64594 -13.17767 -12.93647 -12.82814 -12.72724 -12.59501 -12.15887 -12.08515 -11.91367 -11.79089 -11.56908 -11.32614 -11.16816 -10.84418 -10.76685 -10.57545 -10.41091 -10.02670 -9.89443 -9.66817 -9.52667 -8.89046 -8.76319 -8.49859 -8.34851 -7.64214 -7.07006 -6.30984 -3.11597 0.48684 1.08694 2.07254 2.35426 3.00572 3.19169 3.33334 3.45473 3.55257 3.73036 4.18831 4.41754 4.50690 4.57745 4.66155 4.77445 4.79585 4.95026 5.02903 5.09011 5.17650 5.23584 5.26682 5.40484 5.46433 5.48589 5.52374 5.60257 5.67997 5.74267 5.79942 5.88398 5.94377 5.98282 6.02543 6.08537 6.13308 6.18318 6.30577 6.35528 6.45185 6.55004 6.57823 6.60776 6.77119 6.86301 6.96764 6.98002 7.50526 7.72270 8.26122 8.35627 9.06380 9.66028 10.31767 11.19924 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.002860 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.902089 B = 9786.835474 C =10855.879410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.021 4.021 3 Si 1.045 2.955 4 H -0.301 1.301 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.327 4.327 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.120 3.880 11 C -0.121 4.121 12 C -0.125 4.125 13 H 0.082 0.918 14 C 0.130 3.870 15 N -0.599 5.599 16 C 0.585 3.415 17 O -0.549 6.549 18 C -0.158 4.158 19 C -0.166 4.166 20 C 0.029 3.971 21 C -0.075 4.075 22 C -0.135 4.135 23 C -0.138 4.138 24 C 0.043 3.957 25 N -0.341 5.341 26 C 0.008 3.992 27 C 0.101 3.899 28 C -0.126 4.126 29 C 0.170 3.830 30 H 0.021 0.979 31 H 0.261 0.739 32 H 0.029 0.971 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.178 0.822 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.417 -21.336 4.945 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.877 3.123 4 H -0.228 1.228 5 H -0.226 1.226 6 H -0.196 1.196 7 C -0.454 4.454 8 H 0.097 0.903 9 N -0.328 5.328 10 C -0.005 4.005 11 C -0.160 4.160 12 C -0.146 4.146 13 H 0.101 0.899 14 C 0.008 3.992 15 N -0.330 5.330 16 C 0.373 3.627 17 O -0.427 6.427 18 C -0.166 4.166 19 C -0.190 4.190 20 C -0.075 4.075 21 C -0.094 4.094 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.075 4.075 25 N -0.005 5.005 26 C -0.125 4.125 27 C -0.022 4.022 28 C -0.165 4.165 29 C 0.061 3.939 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.179 0.821 43 H 0.195 0.805 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.502 -19.687 5.540 22.990 hybrid contribution 0.001 -1.682 -0.260 1.702 sum 10.503 -21.369 5.281 24.389 Atomic orbital electron populations 1.70959 1.05851 1.29819 1.49499 1.25675 0.96169 1.00894 0.99356 0.84334 0.74466 0.76250 0.77200 1.22833 1.22588 1.19599 1.19976 0.89332 0.97651 1.38449 0.90338 1.44538 1.16031 1.05338 1.66910 1.22391 0.91292 0.91271 0.95497 1.22449 0.98037 0.94694 1.00806 1.22616 0.96962 0.94381 1.00623 0.89948 1.21661 0.95398 0.79377 1.02768 1.48240 1.40576 1.09682 1.34537 1.17533 0.81928 0.83228 0.79984 1.90755 1.30293 1.82394 1.39298 1.19524 1.07531 0.96075 0.93443 1.21230 1.06171 0.93177 0.98432 1.18803 1.08583 0.98170 0.81904 1.20681 0.97270 0.91141 1.00302 1.20941 1.01541 0.99149 0.93856 1.20725 1.01930 0.98172 0.94952 1.21681 1.00483 0.86772 0.98547 1.41293 1.39140 1.12736 1.07337 1.21881 1.05706 0.85393 0.99475 1.22175 0.89057 1.00373 0.90606 1.21830 0.96963 0.94666 1.03010 1.20515 0.91423 0.88161 0.93772 0.96118 0.92898 0.95353 0.93411 0.91416 0.91269 0.91158 0.88914 0.82707 0.83877 0.84860 0.83730 0.82134 0.80483 0.88453 0.91781 0.91482 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.81 13.70 55.49 0.76 -28.05 16 2 C -0.02 -0.60 5.46 -17.43 -0.10 -0.70 16 3 Si 1.04 26.17 25.24 -169.99 -4.29 21.88 16 4 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.27 -6.07 4.65 56.52 0.26 -5.81 16 7 C -0.33 -9.18 10.07 -15.06 -0.15 -9.33 16 8 H 0.08 2.30 7.42 -52.48 -0.39 1.91 16 9 N -0.60 -14.50 3.30 -163.27 -0.54 -15.04 16 10 C 0.12 2.60 4.53 -1.92 -0.01 2.59 16 11 C -0.12 -2.03 6.53 -25.14 -0.16 -2.20 16 12 C -0.13 -2.13 2.79 -89.51 -0.25 -2.38 16 13 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 14 C 0.13 1.93 5.99 -3.51 -0.02 1.91 16 15 N -0.60 -8.89 3.01 -173.36 -0.52 -9.41 16 16 C 0.59 9.11 7.55 -12.48 -0.09 9.01 16 17 O -0.55 -10.00 16.44 5.28 0.09 -9.91 16 18 C -0.16 -2.12 5.26 -105.06 -0.55 -2.67 16 19 C -0.17 -1.92 8.46 -38.55 -0.33 -2.25 16 20 C 0.03 0.32 6.70 -84.01 -0.56 -0.24 16 21 C -0.08 -0.63 10.11 -39.28 -0.40 -1.03 16 22 C -0.13 -0.93 10.07 -39.50 -0.40 -1.33 16 23 C -0.14 -0.88 9.97 -39.91 -0.40 -1.28 16 24 C 0.04 0.33 10.89 -16.34 -0.18 0.15 16 25 N -0.34 -3.60 2.92 -60.42 -0.18 -3.78 16 26 C 0.01 0.10 11.56 -16.17 -0.19 -0.09 16 27 C 0.10 1.39 5.43 -3.49 -0.02 1.37 16 28 C -0.13 -2.19 5.47 -26.99 -0.15 -2.34 16 29 C 0.17 3.31 2.58 -68.13 -0.18 3.13 16 30 H 0.02 0.42 7.96 -51.93 -0.41 0.01 16 31 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 32 H 0.03 0.64 4.85 -51.93 -0.25 0.38 16 33 H 0.05 1.10 6.63 -51.93 -0.34 0.76 16 34 H 0.07 1.02 8.12 -51.92 -0.42 0.60 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 37 H 0.09 1.39 7.03 -51.93 -0.36 1.03 16 38 H 0.16 1.54 7.15 -52.49 -0.38 1.16 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.10 1.23 4.30 -51.93 -0.22 1.01 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 1.27 8.11 -51.93 -0.42 0.84 16 47 H 0.08 1.39 7.62 -51.93 -0.40 0.99 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -35.12 363.64 -10.02 -45.14 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.69 Total: 1.34 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -4.13 Total: -7.65 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.48 Total: -56.28 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -4.29 Total: 21.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.12 -10.02 -45.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036833300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.870 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds