Wall clock time and date at job start Sat Apr 11 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99980 * 2 1 4 4 H 1.48497 * 109.46901 * 275.00030 * 3 2 1 5 5 H 1.48500 * 109.47201 * 34.99866 * 3 2 1 6 6 H 1.48497 * 109.47097 * 154.99994 * 3 2 1 7 7 C 1.38813 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00283 * 206.71697 * 7 2 1 9 9 N 1.36941 * 119.99449 * 26.71484 * 7 2 1 10 10 C 1.44786 * 120.18639 * 10.26313 * 9 7 2 11 11 C 1.50588 * 112.03372 * 264.70393 * 10 9 7 12 12 C 1.51313 * 113.42282 * 285.04805 * 11 10 9 13 13 H 1.08997 * 111.99934 * 185.91001 * 12 11 10 14 14 C 1.54720 * 106.47930 * 307.87825 * 12 11 10 15 15 C 1.54232 * 104.37752 * 89.11133 * 14 12 11 16 16 C 1.51128 * 105.27473 * 11.32875 * 15 14 12 17 17 H 1.09005 * 106.47530 * 122.81855 * 16 15 14 18 18 C 1.49813 * 120.17869 * 190.24231 * 9 7 2 19 19 N 1.48067 * 109.76612 * 8.25658 * 16 15 14 20 20 C 1.34777 * 127.84027 * 155.03602 * 19 16 15 21 21 O 1.21605 * 120.00154 * 182.15267 * 20 19 16 22 22 C 1.47380 * 119.99909 * 2.15391 * 20 19 16 23 23 C 1.39312 * 120.34454 * 4.01794 * 22 20 19 24 24 C 1.38279 * 120.20272 * 179.97438 * 23 22 20 25 25 C 1.38064 * 120.88107 * 359.97438 * 24 23 22 26 26 C 1.38980 * 120.26537 * 0.03946 * 25 24 23 27 27 N 1.37792 * 133.36666 * 179.97438 * 26 25 24 28 28 H 0.97002 * 125.07704 * 359.96931 * 27 26 25 29 29 C 1.36546 * 109.85356 * 179.97438 * 27 26 25 30 30 C 1.34550 * 109.89431 * 359.97438 * 29 27 26 31 31 C 1.40661 * 119.52351 * 359.96065 * 26 25 24 32 32 H 0.97004 * 120.00053 * 359.97438 * 1 2 3 33 33 H 1.09008 * 108.93042 * 25.23353 * 10 9 7 34 34 H 1.09000 * 108.93438 * 143.91338 * 10 9 7 35 35 H 1.09001 * 108.47684 * 164.14224 * 11 10 9 36 36 H 1.09001 * 108.80711 * 46.18643 * 11 10 9 37 37 H 1.09010 * 110.45067 * 207.83894 * 14 12 11 38 38 H 1.09001 * 110.45404 * 330.38685 * 14 12 11 39 39 H 1.09004 * 110.28279 * 130.50777 * 15 14 12 40 40 H 1.08989 * 110.28551 * 252.52065 * 15 14 12 41 41 H 1.09001 * 109.55153 * 30.85536 * 18 9 7 42 42 H 1.09005 * 109.54891 * 270.57727 * 18 9 7 43 43 H 1.08005 * 119.90423 * 359.70809 * 23 22 20 44 44 H 1.07995 * 119.56184 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.86098 * 179.97438 * 25 24 23 46 46 H 1.07996 * 125.05835 * 179.97438 * 29 27 26 47 47 H 1.08002 * 126.49265 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5044 2.6199 0.8030 6 1 3.5965 1.4120 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0038 -1.2522 0.4199 9 7 1.4352 -2.3245 -0.5342 10 6 0.2067 -2.2222 -1.2936 11 6 -1.0071 -2.4873 -0.4427 12 6 -1.2038 -3.9513 -0.1148 13 1 -2.1410 -4.1293 0.4125 14 6 -1.1610 -4.7122 -1.4613 15 6 0.3307 -5.0474 -1.6646 16 6 0.9926 -4.7356 -0.3422 17 1 1.4798 -5.6546 -0.0161 18 6 2.0741 -3.6650 -0.3359 19 7 -0.0395 -4.4315 0.6750 20 6 0.0567 -4.5561 2.0135 21 8 -0.9005 -4.3001 2.7184 22 6 1.3222 -5.0026 2.6229 23 6 2.4477 -5.2174 1.8304 24 6 3.6336 -5.6358 2.4053 25 6 3.7255 -5.8470 3.7666 26 6 2.6200 -5.6415 4.5835 27 7 2.4094 -5.7659 5.9395 28 1 3.0781 -6.0457 6.5842 29 6 1.1189 -5.4365 6.2405 30 6 0.4602 -5.0939 5.1184 31 6 1.4066 -5.2159 4.0135 32 1 -0.4850 0.8401 0.0004 33 1 0.1320 -1.2183 -1.7118 34 1 0.2344 -2.9439 -2.1099 35 1 -1.8874 -2.1265 -0.9747 36 1 -0.9116 -1.9298 0.4891 37 1 -1.7521 -5.6261 -1.4013 38 1 -1.5221 -4.0764 -2.2698 39 1 0.4507 -6.1022 -1.9117 40 1 0.7539 -4.4247 -2.4526 41 1 2.5981 -3.6816 0.6197 42 1 2.7804 -3.8555 -1.1440 43 1 2.3926 -5.0609 0.7632 44 1 4.4996 -5.7996 1.7812 45 1 4.6599 -6.1742 4.1982 46 1 0.6906 -5.4490 7.2318 47 1 -0.5732 -4.7880 5.0483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039441836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:11 Heat of formation + Delta-G solvation = 127.241589 kcal Electronic energy + Delta-G solvation = -31392.505406 eV Core-core repulsion = 27544.255244 eV Total energy + Delta-G solvation = -3848.250162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.24167 -40.29650 -37.61827 -36.59881 -34.63130 -33.09979 -31.60371 -31.28927 -30.57854 -29.11343 -28.64831 -27.18183 -25.90061 -23.93511 -23.27330 -22.16114 -21.42375 -20.89674 -20.32775 -19.29176 -18.64185 -17.57485 -16.92480 -16.41366 -15.73536 -15.45984 -15.09223 -14.77938 -14.45876 -14.36334 -13.99944 -13.90030 -13.36574 -13.22617 -13.12568 -12.88225 -12.63173 -12.57590 -12.46453 -12.08413 -11.67642 -11.47555 -11.25667 -11.24604 -11.11821 -10.86748 -10.74012 -10.66219 -10.42132 -10.14873 -10.04877 -9.79961 -9.63967 -9.47193 -9.16207 -8.91106 -8.33733 -8.02787 -7.90719 -7.49295 -6.77435 -5.69563 -2.98089 0.95866 1.76075 2.89018 3.20045 3.38299 3.44014 3.51730 3.53147 3.58139 4.32225 4.52358 4.75467 4.86618 4.94686 5.02419 5.13965 5.23894 5.27913 5.43132 5.49216 5.50632 5.53896 5.71083 5.73885 5.79770 5.90794 5.96416 6.06322 6.12079 6.17023 6.24954 6.26975 6.32469 6.42110 6.53560 6.60439 6.61725 6.64765 6.80538 6.81846 6.89166 6.95160 7.14573 7.27140 7.30982 7.61294 7.69144 7.82919 8.19751 8.26102 8.41377 8.86370 9.32679 9.91076 10.40860 11.34720 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.004974 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.750813 B = 5627.451685 C = 6563.376727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C -0.001 4.001 3 Si 0.893 3.107 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.586 5.586 10 C 0.177 3.823 11 C -0.137 4.137 12 C 0.134 3.866 13 H 0.079 0.921 14 C -0.127 4.127 15 C -0.118 4.118 16 C 0.105 3.895 17 H 0.069 0.931 18 C 0.104 3.896 19 N -0.586 5.586 20 C 0.586 3.414 21 O -0.545 6.545 22 C -0.073 4.073 23 C -0.156 4.156 24 C -0.110 4.110 25 C -0.113 4.113 26 C 0.081 3.919 27 N -0.599 5.599 28 H 0.412 0.588 29 C 0.038 3.962 30 C -0.180 4.180 31 C -0.059 4.059 32 H 0.250 0.750 33 H 0.075 0.925 34 H 0.017 0.983 35 H 0.043 0.957 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.182 0.818 44 H 0.129 0.871 45 H 0.118 0.882 46 H 0.169 0.831 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -15.091 3.445 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.198 4.198 3 Si 0.723 3.277 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.310 5.310 10 C 0.051 3.949 11 C -0.177 4.177 12 C 0.032 3.968 13 H 0.097 0.903 14 C -0.165 4.165 15 C -0.156 4.156 16 C 0.001 3.999 17 H 0.087 0.913 18 C -0.021 4.021 19 N -0.318 5.318 20 C 0.376 3.624 21 O -0.424 6.424 22 C -0.077 4.077 23 C -0.174 4.174 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.026 4.026 27 N -0.203 5.203 28 H 0.249 0.751 29 C -0.088 4.088 30 C -0.205 4.205 31 C -0.064 4.064 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.198 0.802 44 H 0.147 0.853 45 H 0.136 0.864 46 H 0.186 0.814 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.488 -14.857 4.054 15.790 hybrid contribution 0.777 0.947 0.592 1.361 sum 4.266 -13.910 4.646 15.273 Atomic orbital electron populations 1.70223 1.04896 1.24877 1.53787 1.24668 0.95162 0.97880 1.02112 0.86387 0.79368 0.84516 0.77380 1.21754 1.22192 1.20744 1.19225 0.97526 0.86197 1.34663 0.91109 1.44489 1.25506 1.00528 1.60482 1.19991 0.84129 0.99848 0.90958 1.21821 0.99127 0.91723 1.05076 1.21964 0.88891 0.96534 0.89432 0.90273 1.22639 0.95924 0.99893 0.98084 1.21889 0.95999 1.00987 0.96678 1.21798 0.90552 0.98278 0.89317 0.91341 1.22415 0.93462 0.86122 1.00090 1.48705 1.15368 1.63752 1.03961 1.17489 0.87426 0.77599 0.79887 1.90696 1.39389 1.52072 1.60280 1.19314 0.94073 1.02481 0.91833 1.23143 0.92149 0.98354 1.03760 1.20761 0.97968 1.00510 0.93671 1.20111 0.95846 1.04180 0.93244 1.18136 0.96022 1.04598 0.83799 1.41635 1.11619 1.61044 1.06027 0.75139 1.21873 0.83862 1.03296 0.99757 1.21953 1.00483 1.08212 0.89899 1.18970 0.93312 1.01914 0.92237 0.93954 0.90657 0.96556 0.93869 0.88028 0.92200 0.89988 0.91305 0.89376 0.90638 0.94688 0.80181 0.85335 0.86406 0.81368 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 8.86 55.49 0.49 -24.86 16 2 C 0.00 -0.01 4.80 -17.43 -0.08 -0.10 16 3 Si 0.89 21.99 29.63 -169.99 -5.04 16.95 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.69 9.74 -15.06 -0.15 -6.83 16 8 H 0.07 1.92 7.96 -52.49 -0.42 1.50 16 9 N -0.59 -13.95 2.91 -173.91 -0.51 -14.46 16 10 C 0.18 4.01 4.53 -6.16 -0.03 3.98 16 11 C -0.14 -3.08 4.19 -28.79 -0.12 -3.20 16 12 C 0.13 2.60 3.84 -66.69 -0.26 2.34 16 13 H 0.08 1.58 8.00 -51.93 -0.42 1.16 16 14 C -0.13 -1.89 6.02 -25.18 -0.15 -2.04 16 15 C -0.12 -1.66 5.81 -27.03 -0.16 -1.82 16 16 C 0.11 1.76 1.97 -68.43 -0.13 1.63 16 17 H 0.07 1.01 5.54 -51.93 -0.29 0.72 16 18 C 0.10 2.00 5.26 -2.61 -0.01 1.98 16 19 N -0.59 -11.65 2.62 -158.54 -0.42 -12.07 16 20 C 0.59 12.80 7.85 -12.54 -0.10 12.70 16 21 O -0.55 -13.32 15.45 5.27 0.08 -13.24 16 22 C -0.07 -1.42 5.90 -104.75 -0.62 -2.04 16 23 C -0.16 -2.55 6.56 -39.17 -0.26 -2.80 16 24 C -0.11 -1.49 9.99 -39.63 -0.40 -1.89 16 25 C -0.11 -1.48 10.06 -39.37 -0.40 -1.87 16 26 C 0.08 1.20 7.27 -84.00 -0.61 0.59 16 27 N -0.60 -7.00 6.06 -10.66 -0.06 -7.07 16 28 H 0.41 3.20 8.96 -40.82 -0.37 2.84 16 29 C 0.04 0.47 11.82 -16.76 -0.20 0.27 16 30 C -0.18 -3.02 10.24 -37.78 -0.39 -3.41 16 31 C -0.06 -1.07 6.15 -104.85 -0.64 -1.71 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.08 1.96 6.09 -51.92 -0.32 1.64 16 34 H 0.02 0.33 3.93 -51.93 -0.20 0.12 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 2.84 6.54 -51.93 -0.34 2.50 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.08 1.16 7.37 -51.93 -0.38 0.78 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.26 6.17 -51.94 -0.32 0.94 16 41 H 0.08 1.51 4.78 -51.93 -0.25 1.26 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.18 2.82 1.70 -52.73 -0.09 2.73 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.16 2.75 7.17 -52.49 -0.38 2.38 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -33.93 348.12 -10.76 -44.69 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.86 Total: 9.03 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -4.70 Total: -4.22 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.50 Total: -58.45 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.04 Total: 16.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.93 -10.76 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039441836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.933 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds