Wall clock time and date at job start Sat Apr 11 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00003 * 2 1 4 4 H 1.48506 * 109.47216 * 270.00275 * 3 2 1 5 5 H 1.48503 * 109.47060 * 29.99961 * 3 2 1 6 6 H 1.48498 * 109.47365 * 149.99982 * 3 2 1 7 7 C 1.38809 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00150 * 175.07993 * 7 2 1 9 9 N 1.36931 * 120.00306 * 355.07613 * 7 2 1 10 10 C 1.44794 * 120.18174 * 214.76566 * 9 7 2 11 11 C 1.51513 * 112.22267 * 264.53043 * 10 9 7 12 12 C 1.51310 * 113.25141 * 285.36987 * 11 10 9 13 13 H 1.09008 * 111.31088 * 185.23543 * 12 11 10 14 14 C 1.54712 * 106.48292 * 307.65843 * 12 11 10 15 15 C 1.54617 * 104.28994 * 88.99550 * 14 12 11 16 16 C 1.50870 * 105.21255 * 11.53829 * 15 14 12 17 17 H 1.09005 * 105.90424 * 122.36444 * 16 15 14 18 18 C 1.49815 * 120.17956 * 34.73939 * 9 7 2 19 19 N 1.48060 * 109.90812 * 8.04192 * 16 15 14 20 20 C 1.34774 * 127.84794 * 155.16051 * 19 16 15 21 21 O 1.21593 * 120.00475 * 184.14010 * 20 19 16 22 22 C 1.47504 * 119.99670 * 4.14100 * 20 19 16 23 23 C 1.41195 * 126.36748 * 354.57225 * 22 20 19 24 24 C 1.38004 * 106.86405 * 179.97438 * 23 22 20 25 25 C 1.41383 * 131.98538 * 179.97438 * 24 23 22 26 26 C 1.35744 * 119.33143 * 180.02562 * 25 24 23 27 27 C 1.40826 * 119.71764 * 359.97438 * 26 25 24 28 28 C 1.34543 * 120.58548 * 0.02562 * 27 26 25 29 29 N 1.37428 * 120.74223 * 359.97438 * 28 27 26 30 30 C 1.35132 * 131.28567 * 180.02562 * 29 28 27 31 31 H 0.97001 * 120.00323 * 359.97438 * 1 2 3 32 32 H 1.09011 * 108.93023 * 143.82734 * 10 9 7 33 33 H 1.08999 * 108.85731 * 25.19111 * 10 9 7 34 34 H 1.08996 * 108.72769 * 164.38968 * 11 10 9 35 35 H 1.09006 * 108.62560 * 46.27418 * 11 10 9 36 36 H 1.08998 * 110.45562 * 207.84435 * 14 12 11 37 37 H 1.09000 * 110.45170 * 330.39703 * 14 12 11 38 38 H 1.09005 * 110.17161 * 252.68524 * 15 14 12 39 39 H 1.08993 * 110.53796 * 130.58649 * 15 14 12 40 40 H 1.08994 * 109.55208 * 270.57642 * 18 9 7 41 41 H 1.09000 * 109.54441 * 30.76659 * 18 9 7 42 42 H 1.07997 * 126.57143 * 0.02562 * 23 22 20 43 43 H 1.08004 * 120.33479 * 0.02562 * 25 24 23 44 44 H 1.07996 * 120.13784 * 179.97438 * 26 25 24 45 45 H 1.08003 * 119.70836 * 179.97438 * 27 26 25 46 46 H 1.07996 * 119.62851 * 180.27791 * 28 27 26 47 47 H 1.07992 * 125.61258 * 359.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0873 -1.2038 -0.0808 9 7 1.3294 -2.3859 0.1007 10 6 1.9094 -3.4998 0.8213 11 6 2.6339 -4.4621 -0.0979 12 6 1.6985 -5.3272 -0.9141 13 1 2.2490 -6.0681 -1.4940 14 6 0.7203 -5.9835 0.0889 15 6 -0.4456 -4.9741 0.2010 16 6 -0.2237 -3.9872 -0.9184 17 1 -1.1287 -4.0155 -1.5253 18 6 -0.0199 -2.5353 -0.5330 19 7 0.8753 -4.4555 -1.7930 20 6 1.0852 -4.1551 -3.0900 21 8 1.9981 -4.6821 -3.6962 22 6 0.2075 -3.1870 -3.7741 23 6 -0.9486 -2.5800 -3.2370 24 6 -1.4558 -1.7490 -4.2152 25 6 -2.5857 -0.8996 -4.2421 26 6 -2.8513 -0.1817 -5.3632 27 6 -2.0009 -0.2915 -6.4803 28 6 -0.9276 -1.1021 -6.4466 29 7 -0.6385 -1.8386 -5.3229 30 6 0.3648 -2.7042 -5.0579 31 1 -0.4851 0.8400 0.0004 32 1 1.1156 -4.0369 1.3407 33 1 2.6152 -3.1144 1.5570 34 1 3.2720 -5.1083 0.5047 35 1 3.2621 -3.8872 -0.7784 36 1 0.3644 -6.9392 -0.2959 37 1 1.2012 -6.1173 1.0579 38 1 -0.4116 -4.4661 1.1648 39 1 -1.4027 -5.4798 0.0747 40 1 -0.7910 -2.2329 0.1754 41 1 -0.0762 -1.9084 -1.4229 42 1 -1.3573 -2.7355 -2.2495 43 1 -3.2310 -0.8227 -3.3795 44 1 -3.7111 0.4708 -5.3982 45 1 -2.2126 0.2795 -7.3723 46 1 -0.2832 -1.1710 -7.3105 47 1 1.1580 -2.9750 -5.7389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039447325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:20 Heat of formation + Delta-G solvation = 103.454612 kcal Electronic energy + Delta-G solvation = -31253.080807 eV Core-core repulsion = 27403.799164 eV Total energy + Delta-G solvation = -3849.281643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.96588 -40.16548 -37.64420 -36.14187 -34.44510 -33.37662 -32.29321 -31.12337 -31.03140 -29.56609 -27.64917 -26.92839 -25.71799 -24.14358 -23.78689 -22.57384 -21.62506 -20.72639 -20.67989 -19.21880 -18.23523 -17.29388 -16.88991 -16.19305 -16.10845 -15.38714 -15.27949 -15.16652 -14.98266 -14.36565 -14.28091 -14.04479 -13.46642 -13.44419 -13.16424 -12.89377 -12.76817 -12.43008 -12.07848 -12.01038 -11.76467 -11.53950 -11.47445 -11.22539 -11.19036 -11.04384 -10.83605 -10.66745 -10.57385 -10.39369 -10.31033 -10.02608 -9.97282 -9.66604 -9.40510 -9.21364 -8.41416 -8.30841 -7.86107 -7.09669 -6.48449 -5.74769 -3.21620 0.95673 1.58114 2.52083 2.85719 3.39526 3.45881 3.47988 3.55922 3.70442 4.10563 4.52873 4.61569 4.83517 4.93962 4.96025 4.99870 5.18874 5.25883 5.27510 5.47383 5.49491 5.51224 5.66078 5.69927 5.75495 5.81833 5.83683 5.97134 6.01612 6.10389 6.11828 6.18945 6.25318 6.34389 6.45395 6.50965 6.53186 6.57905 6.61359 6.67843 6.86684 6.91092 7.03127 7.13609 7.15689 7.47733 7.49119 7.62851 7.88516 8.24962 8.54292 8.82609 9.28261 9.91122 10.49221 11.34200 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008988 B = 0.005959 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.656057 B = 4698.018373 C = 6534.646486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.016 3.984 3 Si 0.895 3.105 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.058 0.942 9 N -0.588 5.588 10 C 0.148 3.852 11 C -0.158 4.158 12 C 0.142 3.858 13 H 0.084 0.916 14 C -0.125 4.125 15 C -0.120 4.120 16 C 0.098 3.902 17 H 0.060 0.940 18 C 0.161 3.839 19 N -0.586 5.586 20 C 0.616 3.384 21 O -0.566 6.566 22 C -0.158 4.158 23 C -0.150 4.150 24 C 0.020 3.980 25 C -0.058 4.058 26 C -0.150 4.150 27 C -0.137 4.137 28 C 0.037 3.963 29 N -0.342 5.342 30 C 0.013 3.987 31 H 0.252 0.748 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.172 0.828 43 H 0.143 0.857 44 H 0.129 0.871 45 H 0.140 0.860 46 H 0.157 0.843 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 -6.379 -7.007 11.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.183 4.183 3 Si 0.725 3.275 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.076 0.924 9 N -0.311 5.311 10 C 0.020 3.980 11 C -0.199 4.199 12 C 0.039 3.961 13 H 0.102 0.898 14 C -0.164 4.164 15 C -0.158 4.158 16 C -0.006 4.006 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.317 5.317 20 C 0.407 3.593 21 O -0.447 6.447 22 C -0.165 4.165 23 C -0.173 4.173 24 C -0.083 4.083 25 C -0.077 4.077 26 C -0.170 4.170 27 C -0.157 4.157 28 C -0.081 4.081 29 N -0.006 5.006 30 C -0.121 4.121 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.189 0.811 43 H 0.160 0.840 44 H 0.147 0.853 45 H 0.158 0.842 46 H 0.174 0.826 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.633 -6.369 -7.661 11.969 hybrid contribution 0.633 1.231 -0.146 1.392 sum -6.000 -5.138 -7.807 11.106 Atomic orbital electron populations 1.69896 1.05081 1.25160 1.54697 1.25214 0.95468 0.97782 0.99844 0.86403 0.79327 0.84192 0.77541 1.21731 1.21594 1.20510 1.19033 0.90639 0.83330 1.44909 0.92391 1.44003 1.17636 1.09466 1.59998 1.20290 0.96019 0.89177 0.92491 1.22165 0.98849 0.98986 0.99894 1.21659 0.92491 0.92039 0.89922 0.89837 1.22659 0.96373 0.97866 0.99488 1.21955 0.97939 0.96220 0.99662 1.21951 0.89231 0.97583 0.91866 0.92191 1.21849 0.88083 0.87911 0.98526 1.48615 1.27818 1.47051 1.08245 1.16739 0.82945 0.80182 0.79418 1.90698 1.33767 1.54816 1.65428 1.19424 0.99009 1.03510 0.94581 1.22078 0.96985 0.99087 0.99197 1.18834 0.96146 1.04956 0.88384 1.20695 0.94418 0.93856 0.98728 1.20825 1.01004 1.01821 0.93383 1.20628 0.95127 0.99885 1.00110 1.21561 1.00071 0.96495 0.89968 1.41261 1.19571 1.28813 1.10966 1.21837 0.94722 0.97372 0.98200 0.93779 0.94011 0.93672 0.92597 0.92179 0.91849 0.90085 0.89434 0.91417 0.93215 0.89695 0.81138 0.83961 0.85260 0.84202 0.82604 0.80655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.13 10.73 55.49 0.60 -24.53 16 2 C 0.02 0.43 5.38 -17.43 -0.09 0.34 16 3 Si 0.90 22.10 29.56 -169.99 -5.02 17.07 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.86 9.52 -15.06 -0.14 -7.00 16 8 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 9 N -0.59 -14.27 2.89 -173.55 -0.50 -14.78 16 10 C 0.15 3.01 5.35 -5.71 -0.03 2.98 16 11 C -0.16 -2.92 5.01 -28.34 -0.14 -3.06 16 12 C 0.14 2.46 3.85 -66.69 -0.26 2.21 16 13 H 0.08 1.45 7.97 -51.92 -0.41 1.04 16 14 C -0.13 -1.72 6.04 -24.98 -0.15 -1.87 16 15 C -0.12 -1.76 5.80 -26.95 -0.16 -1.92 16 16 C 0.10 1.77 1.92 -68.85 -0.13 1.64 16 17 H 0.06 1.03 5.37 -51.93 -0.28 0.75 16 18 C 0.16 3.58 3.54 -2.90 -0.01 3.57 16 19 N -0.59 -11.42 2.63 -158.94 -0.42 -11.84 16 20 C 0.62 13.15 7.88 -12.49 -0.10 13.06 16 21 O -0.57 -13.20 17.24 5.28 0.09 -13.11 16 22 C -0.16 -3.12 6.00 -105.06 -0.63 -3.75 16 23 C -0.15 -2.80 7.52 -38.55 -0.29 -3.09 16 24 C 0.02 0.34 6.70 -84.00 -0.56 -0.22 16 25 C -0.06 -0.84 10.11 -39.28 -0.40 -1.23 16 26 C -0.15 -1.81 10.07 -39.50 -0.40 -2.20 16 27 C -0.14 -1.52 9.97 -39.91 -0.40 -1.92 16 28 C 0.04 0.47 10.89 -16.35 -0.18 0.29 16 29 N -0.34 -5.51 2.92 -60.42 -0.18 -5.69 16 30 C 0.01 0.22 11.38 -16.16 -0.18 0.04 16 31 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.04 0.77 3.92 -51.92 -0.20 0.56 16 33 H 0.04 0.95 7.96 -51.93 -0.41 0.53 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.99 7.38 -51.93 -0.38 0.61 16 38 H 0.09 1.34 6.13 -51.93 -0.32 1.02 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 1.19 7.54 -51.93 -0.39 0.80 16 41 H 0.09 2.11 4.50 -51.93 -0.23 1.88 16 42 H 0.17 3.15 3.72 -52.49 -0.20 2.95 16 43 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 44 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 45 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 46 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 47 H 0.18 2.70 8.06 -52.49 -0.42 2.28 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -33.12 357.71 -10.48 -43.60 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.18 Total: 6.04 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -4.25 Total: -2.16 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.50 Total: -56.83 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.12 -10.48 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039447325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.056 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds