Wall clock time and date at job start Sat Apr 11 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00359 * 2 1 4 4 H 1.48504 * 109.46733 * 274.99539 * 3 2 1 5 5 H 1.48496 * 109.46890 * 34.99269 * 3 2 1 6 6 H 1.48497 * 109.46918 * 154.99602 * 3 2 1 7 7 C 1.38816 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99970 * 174.09819 * 7 2 1 9 9 N 1.36940 * 119.99712 * 354.09319 * 7 2 1 10 10 C 1.47166 * 125.59456 * 5.47547 * 9 7 2 11 11 C 1.54665 * 107.35060 * 179.12253 * 10 9 7 12 12 C 1.53313 * 102.71540 * 339.49155 * 11 10 9 13 13 C 1.53304 * 112.21720 * 154.99954 * 12 11 10 14 14 C 1.54665 * 102.71558 * 88.18048 * 13 12 11 15 15 N 1.47166 * 107.35010 * 20.50260 * 14 13 12 16 16 C 1.34773 * 125.59589 * 180.88421 * 15 14 13 17 17 O 1.21618 * 120.00349 * 184.91633 * 16 15 14 18 18 C 1.47377 * 119.99747 * 4.90993 * 16 15 14 19 19 C 1.39314 * 120.34784 * 313.20836 * 18 16 15 20 20 C 1.38280 * 120.20650 * 179.97438 * 19 18 16 21 21 C 1.38057 * 120.88002 * 0.02562 * 20 19 18 22 22 C 1.38984 * 120.26606 * 0.02562 * 21 20 19 23 23 N 1.37805 * 133.36711 * 180.02562 * 22 21 20 24 24 H 0.96998 * 125.07036 * 359.91250 * 23 22 21 25 25 C 1.36545 * 109.84966 * 179.97438 * 23 22 21 26 26 C 1.34551 * 109.90074 * 0.02562 * 25 23 22 27 27 C 1.40663 * 119.52412 * 359.97438 * 22 21 20 28 28 C 1.47788 * 108.81169 * 1.15365 * 15 14 13 29 29 C 1.47795 * 125.59006 * 185.50492 * 9 7 2 30 30 H 0.97002 * 119.99519 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.86558 * 59.68262 * 10 9 7 32 32 H 1.08997 * 109.99003 * 298.62851 * 10 9 7 33 33 H 1.08998 * 110.75967 * 221.18722 * 11 10 9 34 34 H 1.08996 * 110.92010 * 97.87371 * 11 10 9 35 35 H 1.08999 * 110.76589 * 329.87308 * 13 12 11 36 36 H 1.08997 * 110.92374 * 206.55599 * 13 12 11 37 37 H 1.09002 * 109.86921 * 261.06582 * 14 13 12 38 38 H 1.09002 * 109.87151 * 139.94728 * 14 13 12 39 39 H 1.07999 * 119.90032 * 359.97438 * 19 18 16 40 40 H 1.07987 * 119.56005 * 179.74540 * 20 19 18 41 41 H 1.07991 * 119.86634 * 179.97438 * 21 20 19 42 42 H 1.08003 * 125.05129 * 180.02562 * 25 23 22 43 43 H 1.07997 * 126.49884 * 179.97438 * 26 25 23 44 44 H 1.09005 * 110.40534 * 96.37323 * 28 15 14 45 45 H 1.09004 * 110.40230 * 218.79034 * 28 15 14 46 46 H 1.09003 * 110.40075 * 83.35544 * 29 9 7 47 47 H 1.09000 * 110.40080 * 320.93682 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5045 2.6198 0.8029 6 1 3.5965 1.4118 0.5918 7 6 2.0102 -1.2022 -0.0005 8 1 3.0858 -1.2047 -0.0967 9 7 1.3308 -2.3850 0.1210 10 6 -0.1332 -2.5334 0.1450 11 6 -0.4416 -4.0435 0.2739 12 6 0.8595 -4.6960 -0.2076 13 6 1.0525 -6.1016 0.3731 14 6 0.3223 -6.9977 -0.6545 15 7 0.2231 -6.2353 -1.9094 16 6 -0.3635 -6.6650 -3.0441 17 8 -0.3097 -5.9858 -4.0515 18 6 -1.0702 -7.9581 -3.0642 19 6 -0.4787 -9.0921 -2.5118 20 6 -1.1446 -10.3039 -2.5318 21 6 -2.3998 -10.4134 -3.0961 22 6 -3.0157 -9.3003 -3.6561 23 7 -4.2307 -9.1026 -4.2755 24 1 -4.8988 -9.7899 -4.4241 25 6 -4.3529 -7.7952 -4.6500 26 6 -3.2486 -7.1125 -4.2967 27 6 -2.3510 -8.0607 -3.6435 28 6 0.8781 -4.9236 -1.7231 29 6 1.9476 -3.7218 0.2502 30 1 -0.4849 0.8401 0.0004 31 1 -0.5600 -2.1457 -0.7800 32 1 -0.5482 -1.9964 0.9979 33 1 -1.2755 -4.3238 -0.3696 34 1 -0.6480 -4.3115 1.3100 35 1 0.5865 -6.1813 1.3552 36 1 2.1104 -6.3587 0.4270 37 1 -0.6753 -7.2423 -0.2899 38 1 0.8926 -7.9117 -0.8204 39 1 0.5029 -9.0247 -2.0666 40 1 -0.6747 -11.1771 -2.1043 41 1 -2.9049 -11.3679 -3.1031 42 1 -5.2088 -7.3720 -5.1547 43 1 -3.0618 -6.0620 -4.4641 44 1 1.9031 -4.9547 -2.0927 45 1 0.3137 -4.1415 -2.2310 46 1 2.2196 -3.9162 1.2877 47 1 2.8233 -3.8002 -0.3942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041707004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:37 Heat of formation + Delta-G solvation = 64.896474 kcal Electronic energy + Delta-G solvation = -29430.364448 eV Core-core repulsion = 25579.410799 eV Total energy + Delta-G solvation = -3850.953649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47666 -40.12834 -38.30443 -36.78945 -35.58214 -32.71716 -32.09434 -30.60936 -29.78957 -29.08531 -28.99537 -28.17964 -25.76287 -24.41877 -23.24222 -22.36159 -21.89983 -21.09667 -20.20049 -19.68875 -18.84372 -17.77829 -17.01697 -16.70432 -16.18003 -15.63943 -15.58836 -14.94078 -14.73438 -14.62791 -14.34070 -14.29456 -13.78434 -13.51884 -13.29651 -13.04671 -12.91836 -12.76291 -12.48305 -12.00557 -11.96404 -11.82391 -11.76964 -11.58105 -11.55215 -11.19145 -11.12596 -10.85146 -10.70275 -10.19693 -10.04480 -9.95177 -9.85003 -9.70817 -9.61672 -9.54448 -8.52524 -8.45995 -8.41434 -7.88932 -6.77153 -5.66435 -2.99013 0.64957 1.37130 2.54376 2.81095 2.93731 3.15704 3.44370 3.49496 3.51502 3.75314 4.40317 4.54307 4.60862 4.68387 4.74559 4.82509 4.91426 5.05620 5.12232 5.16929 5.36440 5.37080 5.44675 5.50629 5.57913 5.63324 5.72490 5.90190 5.91734 5.95186 5.99860 6.09686 6.15916 6.22070 6.25226 6.26472 6.37986 6.42459 6.46793 6.55689 6.58117 6.67948 6.78476 6.84766 6.88739 7.28361 7.61736 7.68908 7.70803 7.88559 8.30877 8.33457 9.27072 9.87526 10.53936 11.45478 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002733 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.900848 B =10243.592623 C =11029.351677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.128 4.128 12 C -0.083 4.083 13 C -0.118 4.118 14 C 0.102 3.898 15 N -0.611 5.611 16 C 0.573 3.427 17 O -0.531 6.531 18 C -0.071 4.071 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.114 4.114 22 C 0.089 3.911 23 N -0.597 5.597 24 H 0.415 0.585 25 C 0.050 3.950 26 C -0.190 4.190 27 C -0.065 4.065 28 C 0.132 3.868 29 C 0.152 3.848 30 H 0.251 0.749 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.173 0.827 43 H 0.151 0.849 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.025 0.975 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 -24.495 -3.656 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.167 4.167 12 C -0.085 4.085 13 C -0.156 4.156 14 C -0.021 4.021 15 N -0.345 5.345 16 C 0.361 3.639 17 O -0.408 6.408 18 C -0.074 4.074 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.135 4.135 22 C -0.018 4.018 23 N -0.201 5.201 24 H 0.252 0.748 25 C -0.075 4.075 26 C -0.215 4.215 27 C -0.071 4.071 28 C 0.011 3.989 29 C 0.025 3.975 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.190 0.810 43 H 0.169 0.831 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.043 0.957 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.455 -23.958 -4.313 25.459 hybrid contribution 0.034 0.565 -0.063 0.569 sum -7.421 -23.393 -4.377 24.929 Atomic orbital electron populations 1.69980 1.04896 1.24939 1.56897 1.24808 0.95677 0.97626 1.02265 0.86139 0.78668 0.83754 0.77459 1.21710 1.21720 1.20673 1.19040 0.90898 0.82500 1.43157 0.90474 1.44588 1.01548 1.00717 1.86336 1.21222 0.84297 0.88183 1.00905 1.22644 0.95120 0.99263 0.99639 1.21635 0.98927 0.94183 0.93754 1.22434 1.00777 0.94281 0.98097 1.22253 1.00709 0.94837 0.84327 1.48608 1.56233 1.18290 1.11320 1.17818 0.78333 0.85474 0.82263 1.90815 1.60371 1.57200 1.32418 1.19284 0.93829 0.93779 1.00551 1.21183 1.00397 0.91936 1.00119 1.20684 0.94093 0.97542 1.00092 1.20107 0.96070 0.95976 1.01303 1.18145 0.87449 0.95569 1.00620 1.41704 1.16025 1.10085 1.52239 0.74786 1.21906 1.00389 0.83032 1.02218 1.21844 0.93637 0.99961 1.06076 1.18933 0.93685 0.93251 1.01222 1.22004 0.97457 0.83808 0.95675 1.21214 0.93403 0.85477 0.97364 0.93826 0.94020 0.93670 0.92266 0.92162 0.89900 0.90500 0.91406 0.91489 0.85106 0.85170 0.86056 0.80964 0.83133 0.91443 0.89750 0.95734 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.43 10.34 55.49 0.57 -26.85 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.43 29.56 -169.99 -5.02 17.40 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.38 10.27 -15.06 -0.15 -6.54 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -15.41 3.41 -170.59 -0.58 -15.99 16 10 C 0.18 4.38 5.38 -2.80 -0.02 4.36 16 11 C -0.13 -2.40 5.92 -25.69 -0.15 -2.56 16 12 C -0.08 -1.41 0.62 -154.03 -0.10 -1.50 16 13 C -0.12 -1.46 5.97 -25.70 -0.15 -1.62 16 14 C 0.10 1.21 5.62 -2.80 -0.02 1.19 16 15 N -0.61 -9.53 3.34 -172.19 -0.58 -10.10 16 16 C 0.57 9.76 7.33 -12.54 -0.09 9.67 16 17 O -0.53 -11.05 17.15 5.26 0.09 -10.96 16 18 C -0.07 -1.01 5.45 -104.75 -0.57 -1.58 16 19 C -0.12 -1.27 8.52 -39.17 -0.33 -1.61 16 20 C -0.10 -0.92 9.99 -39.63 -0.40 -1.31 16 21 C -0.11 -1.01 10.06 -39.37 -0.40 -1.40 16 22 C 0.09 0.97 7.27 -83.99 -0.61 0.36 16 23 N -0.60 -4.95 6.06 -10.66 -0.06 -5.01 16 24 H 0.42 1.93 8.96 -40.82 -0.37 1.56 16 25 C 0.05 0.46 11.82 -16.76 -0.20 0.27 16 26 C -0.19 -2.50 10.77 -37.78 -0.41 -2.90 16 27 C -0.07 -0.91 6.13 -104.85 -0.64 -1.55 16 28 C 0.13 2.35 5.85 -3.20 -0.02 2.33 16 29 C 0.15 3.05 6.28 -3.30 -0.02 3.02 16 30 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.04 1.15 7.54 -51.93 -0.39 0.76 16 32 H 0.05 1.23 7.36 -51.93 -0.38 0.84 16 33 H 0.06 1.09 8.01 -51.93 -0.42 0.68 16 34 H 0.06 1.03 7.82 -51.93 -0.41 0.63 16 35 H 0.08 0.94 7.78 -51.93 -0.40 0.53 16 36 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.64 5.95 -51.93 -0.31 0.33 16 39 H 0.13 1.22 5.86 -52.49 -0.31 0.91 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.07 1.19 7.85 -51.93 -0.41 0.78 16 45 H 0.08 1.78 8.00 -51.93 -0.42 1.37 16 46 H 0.03 0.48 8.07 -51.93 -0.42 0.07 16 47 H 0.04 0.79 7.80 -51.93 -0.41 0.38 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -35.33 375.49 -11.00 -46.33 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.71 Total: 1.20 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -4.37 Total: -1.67 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.65 Total: -57.95 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.33 -11.00 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041707004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.222 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds