Wall clock time and date at job start Sat Apr 11 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48498 * 109.47187 * 95.00963 * 3 2 1 5 5 H 1.48498 * 109.47101 * 215.00981 * 3 2 1 6 6 H 1.48504 * 109.47443 * 335.01112 * 3 2 1 7 7 C 1.38808 * 119.99879 * 180.27403 * 2 1 3 8 8 H 1.08001 * 119.99797 * 173.88746 * 7 2 1 9 9 N 1.36938 * 120.00063 * 353.88106 * 7 2 1 10 10 C 1.48156 * 126.39586 * 6.85412 * 9 7 2 11 11 C 1.55351 * 107.01509 * 174.88508 * 10 9 7 12 12 C 1.53703 * 101.90384 * 337.90897 * 11 10 9 13 13 H 1.08997 * 111.10392 * 281.19449 * 12 11 10 14 14 C 1.51974 * 115.61115 * 153.51443 * 12 11 10 15 15 C 1.53892 * 107.28638 * 184.24648 * 14 12 11 16 16 N 1.46595 * 110.70887 * 51.80592 * 15 14 12 17 17 C 1.34782 * 119.74724 * 132.23629 * 16 15 14 18 18 O 1.21772 * 120.00010 * 355.03590 * 17 16 15 19 19 C 1.46209 * 119.99970 * 175.03344 * 17 16 15 20 20 C 1.41741 * 126.79796 * 317.91236 * 19 17 16 21 21 C 1.34516 * 107.77650 * 179.82733 * 20 19 17 22 22 N 1.36953 * 109.60055 * 0.43815 * 21 20 19 23 23 C 1.36710 * 131.35034 * 179.74444 * 22 21 20 24 24 C 1.35003 * 120.75434 * 180.02562 * 23 22 21 25 25 C 1.40311 * 120.38000 * 359.95674 * 24 23 22 26 26 C 1.36338 * 119.45580 * 0.02562 * 25 24 23 27 27 C 1.36941 * 108.74439 * 359.71998 * 22 21 20 28 28 C 1.46250 * 120.09984 * 312.15948 * 16 15 14 29 29 C 1.45508 * 126.39706 * 187.16592 * 9 7 2 30 30 H 1.09004 * 109.57109 * 93.35389 * 29 9 7 31 31 H 0.97005 * 119.99713 * 359.72935 * 1 2 3 32 32 H 1.09003 * 109.92111 * 294.36705 * 10 9 7 33 33 H 1.09005 * 109.91666 * 55.67043 * 10 9 7 34 34 H 1.08993 * 111.09810 * 219.66728 * 11 10 9 35 35 H 1.09004 * 110.76947 * 96.00342 * 11 10 9 36 36 H 1.09006 * 109.89065 * 303.68717 * 14 12 11 37 37 H 1.08997 * 109.89871 * 64.79665 * 14 12 11 38 38 H 1.09000 * 109.23089 * 172.12752 * 15 14 12 39 39 H 1.09002 * 109.22390 * 291.49039 * 15 14 12 40 40 H 1.07999 * 126.10874 * 359.95013 * 20 19 17 41 41 H 1.07999 * 125.20289 * 180.15586 * 21 20 19 42 42 H 1.07998 * 119.62327 * 359.96854 * 23 22 21 43 43 H 1.07996 * 119.80927 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.26989 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.33614 * 180.02562 * 26 25 24 46 46 H 1.09010 * 109.63087 * 292.34688 * 28 16 15 47 47 H 1.09004 * 109.72590 * 171.28237 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6036 1.9853 1.3947 5 1 3.4908 1.4730 -0.8032 6 1 1.3988 2.6810 -0.5915 7 6 2.0103 -1.2021 -0.0057 8 1 3.0857 -1.2043 -0.1054 9 7 1.3314 -2.3852 0.1150 10 6 -0.1400 -2.5583 0.1169 11 6 -0.4180 -4.0864 0.1465 12 6 0.8969 -4.6586 -0.4067 13 1 0.9362 -4.5727 -1.4926 14 6 1.2390 -6.0701 0.0410 15 6 2.6276 -6.4072 -0.5303 16 7 3.5956 -5.3595 -0.1922 17 6 4.7985 -5.6982 0.3125 18 8 5.0446 -6.8625 0.5707 19 6 5.8081 -4.6676 0.5500 20 6 6.1297 -3.5818 -0.3024 21 6 7.1074 -2.8714 0.2884 22 7 7.4413 -3.4538 1.4821 23 6 8.3673 -3.1098 2.4272 24 6 8.5204 -3.8505 3.5454 25 6 7.7279 -4.9890 3.7565 26 6 6.8004 -5.3429 2.8220 27 6 6.6563 -4.5607 1.6665 28 6 3.2572 -3.9525 -0.4035 29 6 1.9204 -3.7065 0.2717 30 1 1.9967 -3.9489 1.3317 31 1 -0.4850 0.8401 0.0040 32 1 -0.5686 -2.0834 0.9995 33 1 -0.5663 -2.1224 -0.7867 34 1 -1.2577 -4.3450 -0.4985 35 1 -0.5930 -4.4278 1.1668 36 1 1.2643 -6.1179 1.1298 37 1 0.4990 -6.7712 -0.3447 38 1 2.9660 -7.3564 -0.1148 39 1 2.5578 -6.4952 -1.6145 40 1 5.6704 -3.3627 -1.2550 41 1 7.5629 -1.9808 -0.1187 42 1 8.9839 -2.2360 2.2770 43 1 9.2569 -3.5650 4.2818 44 1 7.8516 -5.5800 4.6519 45 1 6.1825 -6.2162 2.9702 46 1 3.1792 -3.7510 -1.4720 47 1 4.0238 -3.3187 0.0426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042149367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:01 Heat of formation + Delta-G solvation = 81.028966 kcal Electronic energy + Delta-G solvation = -30204.637415 eV Core-core repulsion = 26354.383323 eV Total energy + Delta-G solvation = -3850.254092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30359 -39.92337 -38.03274 -36.63179 -35.09420 -33.28303 -32.79011 -31.35786 -30.04396 -29.25376 -28.51392 -27.84402 -24.84095 -23.99567 -23.76366 -22.86467 -21.55620 -21.39765 -20.04412 -19.68064 -18.86632 -17.60183 -16.77312 -16.40985 -16.20568 -15.83902 -15.42639 -15.15758 -14.85611 -14.76408 -14.30192 -14.23848 -13.98726 -13.73634 -13.30336 -13.06957 -12.80541 -12.65191 -12.42966 -12.07155 -11.91038 -11.80960 -11.73173 -11.54366 -11.39715 -11.24498 -10.88917 -10.77555 -10.67002 -10.39274 -10.17347 -9.97364 -9.79849 -9.75544 -9.58584 -9.33172 -8.62166 -8.60709 -8.27085 -7.35111 -6.83175 -5.73520 -3.05925 0.69386 1.20762 2.47181 2.59289 3.18533 3.36899 3.38067 3.43160 3.44947 3.70772 4.37363 4.48730 4.69321 4.70848 4.82719 4.97208 5.05487 5.11051 5.21975 5.27547 5.40546 5.46416 5.62779 5.64779 5.70287 5.72308 5.79677 5.83538 5.87613 5.97292 6.06015 6.12184 6.16389 6.19628 6.22628 6.25505 6.31738 6.38307 6.56396 6.63786 6.67740 6.74819 6.81796 6.93952 7.11870 7.18977 7.55504 7.62013 7.77713 7.81207 8.23350 8.54154 9.18248 9.81921 10.50835 11.39606 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009577 B = 0.004652 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.105939 B = 6016.933967 C = 8179.719633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.179 3.821 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.076 0.924 14 C -0.118 4.118 15 C 0.113 3.887 16 N -0.597 5.597 17 C 0.595 3.405 18 O -0.560 6.560 19 C -0.229 4.229 20 C -0.100 4.100 21 C -0.060 4.060 22 N -0.340 5.340 23 C 0.051 3.949 24 C -0.147 4.147 25 C -0.121 4.121 26 C -0.080 4.080 27 C 0.102 3.898 28 C 0.105 3.895 29 C 0.156 3.844 30 H 0.024 0.976 31 H 0.252 0.748 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.156 0.844 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.146 0.854 44 H 0.135 0.865 45 H 0.146 0.854 46 H 0.067 0.933 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.941 -9.093 3.022 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.054 3.946 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.094 0.906 14 C -0.157 4.157 15 C -0.010 4.010 16 N -0.329 5.329 17 C 0.385 3.615 18 O -0.441 6.441 19 C -0.238 4.238 20 C -0.121 4.121 21 C -0.185 4.185 22 N -0.004 5.004 23 C -0.070 4.070 24 C -0.168 4.168 25 C -0.142 4.142 26 C -0.099 4.099 27 C -0.007 4.007 28 C -0.018 4.018 29 C 0.047 3.953 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.173 0.827 41 H 0.191 0.809 42 H 0.180 0.820 43 H 0.163 0.837 44 H 0.153 0.847 45 H 0.164 0.836 46 H 0.085 0.915 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.172 -9.265 3.172 16.414 hybrid contribution 0.367 1.243 -0.013 1.296 sum 13.540 -8.023 3.160 16.052 Atomic orbital electron populations 1.69956 1.04905 1.25073 1.56643 1.24792 0.95624 0.97526 1.02193 0.86227 0.78692 0.83786 0.77619 1.21672 1.20702 1.21744 1.18971 0.90825 0.82354 1.43320 0.90411 1.44150 1.01624 1.00196 1.85737 1.21534 0.83763 0.88313 1.00963 1.22727 0.95986 0.99392 0.99535 1.22271 0.97222 0.93701 1.00073 0.90607 1.21782 0.95470 0.97278 1.01127 1.21546 0.88569 0.91412 0.99429 1.47672 1.14119 1.07833 1.63235 1.17124 0.81126 0.87152 0.76069 1.90745 1.80084 1.19824 1.53398 1.19259 1.04289 1.02205 0.98073 1.21084 0.97170 0.93610 1.00245 1.21699 1.05688 1.03855 0.87296 1.41473 1.24367 1.19543 1.14976 1.21673 0.93974 1.01470 0.89845 1.20722 1.02225 0.96558 0.97256 1.21043 0.96190 0.97268 0.99693 1.20684 0.98768 0.99281 0.91135 1.18514 0.94946 0.90154 0.97050 1.21760 0.99387 0.79869 1.00787 1.20970 0.91174 0.87211 0.95947 0.95824 0.93751 0.94087 0.93247 0.92281 0.92611 0.91563 0.91014 0.89440 0.92117 0.82678 0.80893 0.82032 0.83664 0.84663 0.83603 0.91478 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.49 55.49 0.58 -25.92 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.60 29.56 -169.99 -5.02 16.57 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.05 9.89 -15.06 -0.15 -6.20 16 8 H 0.08 1.99 7.38 -52.49 -0.39 1.60 16 9 N -0.59 -14.63 3.34 -162.87 -0.54 -15.17 16 10 C 0.18 4.26 5.44 -1.88 -0.01 4.25 16 11 C -0.14 -2.57 6.56 -25.12 -0.16 -2.73 16 12 C -0.11 -1.98 2.58 -89.51 -0.23 -2.21 16 13 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 14 C -0.12 -1.73 5.76 -26.79 -0.15 -1.88 16 15 C 0.11 1.69 6.34 -3.53 -0.02 1.67 16 16 N -0.60 -10.11 2.98 -175.70 -0.52 -10.63 16 17 C 0.60 10.67 7.51 -13.06 -0.10 10.57 16 18 O -0.56 -11.07 16.44 5.12 0.08 -10.98 16 19 C -0.23 -3.79 5.17 -104.46 -0.54 -4.33 16 20 C -0.10 -1.45 8.41 -39.56 -0.33 -1.78 16 21 C -0.06 -0.77 11.53 -16.58 -0.19 -0.96 16 22 N -0.34 -4.47 2.92 -60.81 -0.18 -4.64 16 23 C 0.05 0.51 10.89 -16.53 -0.18 0.33 16 24 C -0.15 -1.30 9.98 -39.95 -0.40 -1.70 16 25 C -0.12 -1.24 10.09 -39.49 -0.40 -1.64 16 26 C -0.08 -1.07 10.06 -39.50 -0.40 -1.47 16 27 C 0.10 1.56 6.71 -83.92 -0.56 1.00 16 28 C 0.11 1.91 4.60 -4.80 -0.02 1.89 16 29 C 0.16 3.20 2.80 -67.82 -0.19 3.01 16 30 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 33 H 0.05 1.29 7.44 -51.93 -0.39 0.91 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 36 H 0.07 1.02 7.99 -51.93 -0.41 0.60 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.32 6.92 -51.93 -0.36 0.96 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.16 2.07 7.50 -52.49 -0.39 1.68 16 41 H 0.17 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.15 1.97 8.06 -52.48 -0.42 1.54 16 46 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 47 H 0.09 1.76 4.66 -51.93 -0.24 1.51 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -32.99 371.73 -10.92 -43.91 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.78 Total: 3.69 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -4.14 Total: -2.42 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.66 Total: -56.37 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.99 -10.92 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042149367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.936 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds