Wall clock time and date at job start Sat Apr 11 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00124 * 2 1 4 4 H 1.48498 * 109.46921 * 270.00338 * 3 2 1 5 5 H 1.48495 * 109.46817 * 30.00284 * 3 2 1 6 6 H 1.48494 * 109.47014 * 150.00120 * 3 2 1 7 7 C 1.38814 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99780 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.46889 * 125.35620 * 0.02562 * 9 7 2 11 11 C 1.54526 * 106.65778 * 164.88923 * 10 9 7 12 12 C 1.53316 * 102.38895 * 27.58520 * 11 10 9 13 13 H 1.09009 * 105.07605 * 80.46450 * 12 11 10 14 14 C 1.48606 * 114.96156 * 196.30676 * 12 11 10 15 15 C 1.50981 * 116.02641 * 90.58797 * 14 12 11 16 16 N 1.44468 * 113.13519 * 32.06987 * 15 14 12 17 17 C 1.34772 * 117.13836 * 148.27961 * 16 15 14 18 18 O 1.21773 * 120.00391 * 185.20960 * 17 16 15 19 19 C 1.46211 * 119.99927 * 5.21260 * 17 16 15 20 20 C 1.41746 * 126.79519 * 35.83706 * 19 17 16 21 21 C 1.34524 * 107.77457 * 179.91354 * 20 19 17 22 22 N 1.36955 * 109.59926 * 359.55392 * 21 20 19 23 23 C 1.36706 * 131.34680 * 179.97438 * 22 21 20 24 24 C 1.34995 * 120.75564 * 179.73809 * 23 22 21 25 25 C 1.40306 * 120.37869 * 0.25735 * 24 23 22 26 26 C 1.36340 * 119.45813 * 359.97438 * 25 24 23 27 27 C 1.36943 * 108.74375 * 0.22576 * 22 21 20 28 28 C 1.43943 * 125.72761 * 328.56930 * 16 15 14 29 29 C 1.48169 * 125.35759 * 180.02562 * 9 7 2 30 30 H 1.09004 * 109.74772 * 57.25623 * 29 9 7 31 31 H 0.97003 * 119.99968 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.01737 * 45.59005 * 10 9 7 33 33 H 1.09001 * 110.05813 * 284.20725 * 10 9 7 34 34 H 1.09009 * 110.81897 * 269.36547 * 11 10 9 35 35 H 1.08995 * 110.99394 * 145.89194 * 11 10 9 36 36 H 1.08996 * 108.17061 * 328.88139 * 14 12 11 37 37 H 1.09008 * 108.00887 * 212.16651 * 14 12 11 38 38 H 1.09007 * 108.74746 * 271.13392 * 15 14 12 39 39 H 1.08994 * 108.65691 * 152.95337 * 15 14 12 40 40 H 1.08005 * 126.11726 * 359.46743 * 20 19 17 41 41 H 1.07995 * 125.19816 * 179.52394 * 21 20 19 42 42 H 1.08001 * 119.62100 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.80832 * 180.27528 * 24 23 22 44 44 H 1.07999 * 120.26934 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.33800 * 180.02562 * 26 25 24 46 46 H 1.08998 * 108.41948 * 152.50960 * 28 16 15 47 47 H 1.08999 * 108.41649 * 269.75043 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1370 -2.5252 -0.0028 11 6 -0.4443 -3.9894 -0.3896 12 6 0.8070 -4.7283 0.0991 13 1 0.6559 -4.8640 1.1702 14 6 0.9874 -6.0935 -0.4595 15 6 1.7889 -6.1865 -1.7356 16 7 2.8213 -5.1805 -1.8320 17 6 3.9445 -5.5142 -2.4980 18 8 4.8855 -4.7419 -2.5302 19 6 4.0332 -6.8034 -3.1818 20 6 2.9860 -7.4813 -3.8548 21 6 3.4880 -8.6292 -4.3448 22 7 4.8172 -8.7215 -4.0280 23 6 5.7455 -9.6875 -4.3000 24 6 7.0221 -9.5556 -3.8814 25 6 7.4165 -8.4231 -3.1531 26 6 6.4995 -7.4544 -2.8709 27 6 5.1775 -7.6100 -3.3137 28 6 2.7581 -3.8550 -1.2743 29 6 1.9433 -3.7349 -0.0017 30 1 2.6006 -3.8386 0.8616 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5748 -1.8461 -0.7344 33 1 -0.5334 -2.3103 0.9896 34 1 -0.5564 -4.0895 -1.4693 35 1 -1.3340 -4.3509 0.1259 36 1 0.0008 -6.5175 -0.6461 37 1 1.4801 -6.7047 0.2968 38 1 1.1123 -6.0764 -2.5831 39 1 2.2535 -7.1712 -1.7845 40 1 1.9654 -7.1410 -3.9504 41 1 2.9283 -9.3656 -4.9022 42 1 5.4553 -10.5640 -4.8603 43 1 7.7440 -10.3261 -4.1087 44 1 8.4382 -8.3195 -2.8186 45 1 6.7877 -6.5766 -2.3117 46 1 3.7743 -3.5197 -1.0670 47 1 2.3250 -3.1881 -2.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042149370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:05 Heat of formation + Delta-G solvation = 87.797373 kcal Electronic energy + Delta-G solvation = -29736.569030 eV Core-core repulsion = 25886.608438 eV Total energy + Delta-G solvation = -3849.960592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47763 -40.03779 -38.05930 -36.77648 -35.28575 -33.20484 -33.09757 -31.51511 -30.35612 -29.44980 -28.58447 -27.91371 -24.91554 -24.46385 -23.84765 -22.63597 -22.38085 -21.48599 -20.29378 -19.54063 -17.99660 -17.28895 -16.89650 -16.47691 -16.42618 -15.92491 -15.62782 -15.26590 -15.05729 -14.82366 -14.62144 -14.44820 -13.94411 -13.85233 -13.54977 -13.16201 -12.90051 -12.47970 -12.36179 -12.18520 -11.94257 -11.85477 -11.71749 -11.58927 -11.40801 -11.26221 -10.96813 -10.75843 -10.66639 -10.51192 -10.04653 -9.86085 -9.82330 -9.54895 -9.48625 -9.44841 -8.82424 -8.56270 -8.04665 -7.49593 -6.82943 -5.63550 -3.01295 0.54782 1.04843 2.33309 2.42989 3.12186 3.43802 3.46707 3.51317 3.53281 3.71736 4.21698 4.53313 4.53489 4.58085 4.69585 4.85666 4.99824 5.02381 5.08272 5.15382 5.27955 5.43591 5.47211 5.51280 5.60211 5.65029 5.68470 5.73596 5.90566 5.92459 5.99841 6.08427 6.09833 6.12895 6.18422 6.28016 6.35951 6.52518 6.57547 6.65659 6.67521 6.71215 6.96528 7.01167 7.09264 7.25632 7.59974 7.70869 7.83615 7.90187 8.34786 8.64923 9.27517 9.86495 10.50144 11.44007 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.002970 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.036098 B = 9424.110562 C =10494.112680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.596 5.596 10 C 0.167 3.833 11 C -0.136 4.136 12 C -0.092 4.092 13 H 0.054 0.946 14 C -0.108 4.108 15 C 0.116 3.884 16 N -0.584 5.584 17 C 0.576 3.424 18 O -0.549 6.549 19 C -0.225 4.225 20 C -0.107 4.107 21 C -0.066 4.066 22 N -0.340 5.340 23 C 0.046 3.954 24 C -0.143 4.143 25 C -0.123 4.123 26 C -0.077 4.077 27 C 0.102 3.898 28 C 0.104 3.896 29 C 0.166 3.834 30 H 0.040 0.960 31 H 0.251 0.749 32 H 0.082 0.918 33 H 0.019 0.981 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.157 0.843 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.150 0.850 46 H 0.076 0.924 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -24.401 -7.805 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.321 5.321 10 C 0.042 3.958 11 C -0.175 4.175 12 C -0.111 4.111 13 H 0.073 0.927 14 C -0.147 4.147 15 C -0.007 4.007 16 N -0.315 5.315 17 C 0.366 3.634 18 O -0.428 6.428 19 C -0.235 4.235 20 C -0.129 4.129 21 C -0.191 4.191 22 N -0.004 5.004 23 C -0.075 4.075 24 C -0.164 4.164 25 C -0.144 4.144 26 C -0.096 4.096 27 C -0.007 4.007 28 C -0.021 4.021 29 C 0.058 3.942 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.174 0.826 41 H 0.190 0.810 42 H 0.179 0.821 43 H 0.164 0.836 44 H 0.154 0.846 45 H 0.168 0.832 46 H 0.095 0.905 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.098 -23.921 -7.850 26.157 hybrid contribution 0.315 0.771 -0.001 0.833 sum 7.413 -23.150 -7.851 25.544 Atomic orbital electron populations 1.69936 1.04859 1.24837 1.57428 1.24779 0.95711 0.97649 1.02264 0.86105 0.78609 0.83396 0.77633 1.21553 1.21758 1.20643 1.19081 0.90600 0.82250 1.43289 0.90339 1.44772 1.01570 0.99092 1.86660 1.21401 0.84192 0.90234 0.99941 1.22664 0.95544 0.99147 1.00104 1.20065 0.96739 0.93626 1.00711 0.92717 1.20359 1.00280 0.97188 0.96840 1.20878 0.90211 0.91691 0.97951 1.46564 1.16688 1.14705 1.53557 1.17284 0.82382 0.85051 0.78731 1.90785 1.37443 1.52375 1.62248 1.19440 0.92954 0.98670 1.12412 1.21230 0.99247 0.93540 0.98835 1.21681 0.81873 1.03151 1.12432 1.41493 1.08872 1.14678 1.35365 1.21647 0.89237 0.93706 1.02927 1.20753 0.94776 0.99917 1.00925 1.21082 1.00319 0.93642 0.99339 1.20795 0.89634 1.00096 0.99028 1.18583 0.94533 0.88526 0.99068 1.21519 1.02348 0.80641 0.97556 1.20241 0.92823 0.86858 0.94282 0.94211 0.93837 0.89967 0.96266 0.92582 0.92225 0.90782 0.92319 0.92841 0.90050 0.82555 0.81032 0.82076 0.83633 0.84557 0.83220 0.90529 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 10.23 55.49 0.57 -26.68 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.22 -6.32 9.82 -15.06 -0.15 -6.47 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.28 2.91 -164.94 -0.48 -15.76 16 10 C 0.17 4.07 5.53 -3.03 -0.02 4.05 16 11 C -0.14 -2.53 6.47 -25.77 -0.17 -2.69 16 12 C -0.09 -1.61 2.32 -93.48 -0.22 -1.82 16 13 H 0.05 0.96 8.01 -51.92 -0.42 0.54 16 14 C -0.11 -1.45 5.55 -29.89 -0.17 -1.62 16 15 C 0.12 1.57 4.89 -6.14 -0.03 1.54 16 16 N -0.58 -10.23 3.13 -181.09 -0.57 -10.80 16 17 C 0.58 10.49 7.43 -13.06 -0.10 10.39 16 18 O -0.55 -11.88 15.80 5.12 0.08 -11.80 16 19 C -0.23 -3.32 5.13 -104.46 -0.54 -3.86 16 20 C -0.11 -1.21 8.48 -39.56 -0.34 -1.55 16 21 C -0.07 -0.62 11.53 -16.58 -0.19 -0.81 16 22 N -0.34 -3.55 2.92 -60.81 -0.18 -3.73 16 23 C 0.05 0.34 10.89 -16.53 -0.18 0.16 16 24 C -0.14 -0.99 9.98 -39.96 -0.40 -1.39 16 25 C -0.12 -1.08 10.09 -39.49 -0.40 -1.48 16 26 C -0.08 -0.93 9.91 -39.50 -0.39 -1.32 16 27 C 0.10 1.36 6.69 -83.92 -0.56 0.80 16 28 C 0.10 2.17 5.42 -6.12 -0.03 2.14 16 29 C 0.17 3.53 3.53 -68.60 -0.24 3.29 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.08 2.25 6.44 -51.93 -0.33 1.91 16 33 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 34 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.83 7.94 -51.93 -0.41 0.42 16 37 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.05 0.66 7.06 -51.93 -0.37 0.30 16 39 H 0.08 0.97 5.57 -51.93 -0.29 0.69 16 40 H 0.16 1.51 6.37 -52.48 -0.33 1.17 16 41 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 44 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.15 1.95 7.78 -52.49 -0.41 1.54 16 46 H 0.08 1.75 6.91 -51.93 -0.36 1.39 16 47 H 0.07 1.58 7.83 -51.93 -0.41 1.17 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -34.65 367.94 -10.93 -45.58 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.68 Total: 0.92 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -4.20 Total: -0.98 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.66 Total: -56.97 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.65 -10.93 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042149370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.382 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds