Wall clock time and date at job start Sat Apr 11 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00124 * 2 1 4 4 H 1.48498 * 109.46921 * 270.00338 * 3 2 1 5 5 H 1.48495 * 109.46817 * 30.00284 * 3 2 1 6 6 H 1.48494 * 109.47014 * 150.00120 * 3 2 1 7 7 C 1.38814 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99780 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.46889 * 125.35620 * 0.02562 * 9 7 2 11 11 C 1.54526 * 106.65778 * 164.88923 * 10 9 7 12 12 C 1.53316 * 102.38895 * 27.58520 * 11 10 9 13 13 H 1.09009 * 105.07605 * 80.46450 * 12 11 10 14 14 C 1.48606 * 114.96156 * 196.30676 * 12 11 10 15 15 C 1.50981 * 116.02641 * 90.58797 * 14 12 11 16 16 N 1.44468 * 113.13519 * 32.06987 * 15 14 12 17 17 C 1.34772 * 117.13836 * 148.27961 * 16 15 14 18 18 O 1.21773 * 120.00391 * 185.20960 * 17 16 15 19 19 C 1.46211 * 119.99927 * 5.21260 * 17 16 15 20 20 C 1.41746 * 126.79519 * 35.83706 * 19 17 16 21 21 C 1.34524 * 107.77457 * 179.91354 * 20 19 17 22 22 N 1.36955 * 109.59926 * 359.55392 * 21 20 19 23 23 C 1.36706 * 131.34680 * 179.97438 * 22 21 20 24 24 C 1.34995 * 120.75564 * 179.73809 * 23 22 21 25 25 C 1.40306 * 120.37869 * 0.25735 * 24 23 22 26 26 C 1.36340 * 119.45813 * 359.97438 * 25 24 23 27 27 C 1.36943 * 108.74375 * 0.22576 * 22 21 20 28 28 C 1.43943 * 125.72761 * 328.56930 * 16 15 14 29 29 C 1.48169 * 125.35759 * 180.02562 * 9 7 2 30 30 H 1.09004 * 109.74772 * 57.25623 * 29 9 7 31 31 H 0.97003 * 119.99968 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.01737 * 45.59005 * 10 9 7 33 33 H 1.09001 * 110.05813 * 284.20725 * 10 9 7 34 34 H 1.09009 * 110.81897 * 269.36547 * 11 10 9 35 35 H 1.08995 * 110.99394 * 145.89194 * 11 10 9 36 36 H 1.08996 * 108.17061 * 328.88139 * 14 12 11 37 37 H 1.09008 * 108.00887 * 212.16651 * 14 12 11 38 38 H 1.09007 * 108.74746 * 271.13392 * 15 14 12 39 39 H 1.08994 * 108.65691 * 152.95337 * 15 14 12 40 40 H 1.08005 * 126.11726 * 359.46743 * 20 19 17 41 41 H 1.07995 * 125.19816 * 179.52394 * 21 20 19 42 42 H 1.08001 * 119.62100 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.80832 * 180.27528 * 24 23 22 44 44 H 1.07999 * 120.26934 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.33800 * 180.02562 * 26 25 24 46 46 H 1.08998 * 108.41948 * 152.50960 * 28 16 15 47 47 H 1.08999 * 108.41649 * 269.75043 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1370 -2.5252 -0.0028 11 6 -0.4443 -3.9894 -0.3896 12 6 0.8070 -4.7283 0.0991 13 1 0.6559 -4.8640 1.1702 14 6 0.9874 -6.0935 -0.4595 15 6 1.7889 -6.1865 -1.7356 16 7 2.8213 -5.1805 -1.8320 17 6 3.9445 -5.5142 -2.4980 18 8 4.8855 -4.7419 -2.5302 19 6 4.0332 -6.8034 -3.1818 20 6 2.9860 -7.4813 -3.8548 21 6 3.4880 -8.6292 -4.3448 22 7 4.8172 -8.7215 -4.0280 23 6 5.7455 -9.6875 -4.3000 24 6 7.0221 -9.5556 -3.8814 25 6 7.4165 -8.4231 -3.1531 26 6 6.4995 -7.4544 -2.8709 27 6 5.1775 -7.6100 -3.3137 28 6 2.7581 -3.8550 -1.2743 29 6 1.9433 -3.7349 -0.0017 30 1 2.6006 -3.8386 0.8616 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5748 -1.8461 -0.7344 33 1 -0.5334 -2.3103 0.9896 34 1 -0.5564 -4.0895 -1.4693 35 1 -1.3340 -4.3509 0.1259 36 1 0.0008 -6.5175 -0.6461 37 1 1.4801 -6.7047 0.2968 38 1 1.1123 -6.0764 -2.5831 39 1 2.2535 -7.1712 -1.7845 40 1 1.9654 -7.1410 -3.9504 41 1 2.9283 -9.3656 -4.9022 42 1 5.4553 -10.5640 -4.8603 43 1 7.7440 -10.3261 -4.1087 44 1 8.4382 -8.3195 -2.8186 45 1 6.7877 -6.5766 -2.3117 46 1 3.7743 -3.5197 -1.0670 47 1 2.3250 -3.1881 -2.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042149370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:04 Heat of formation + Delta-G solvation = 66.995460 kcal Electronic energy + Delta-G solvation = -29737.471069 eV Core-core repulsion = 25886.608438 eV Total energy + Delta-G solvation = -3850.862630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.27107 -41.45454 -39.60719 -37.55488 -36.82320 -34.86948 -34.05587 -33.24039 -31.42250 -30.76318 -30.25636 -28.91039 -26.65781 -25.98199 -24.62173 -24.03195 -23.54073 -22.29721 -22.13750 -20.79493 -19.11570 -18.93917 -18.38612 -17.55513 -17.41027 -16.96588 -16.87552 -16.54213 -16.39691 -16.20141 -16.05255 -15.64877 -15.27515 -15.03522 -14.95040 -14.27576 -14.21053 -13.96468 -13.65017 -13.51880 -13.45274 -13.24583 -12.95528 -12.80254 -12.70764 -12.62625 -12.51411 -12.32590 -12.19874 -12.03821 -11.69217 -11.50363 -11.34771 -11.22656 -11.09152 -10.87866 -10.71753 -9.57503 -9.50665 -8.95118 -8.31103 -7.84387 -5.24149 -0.19606 0.29430 1.37855 1.41291 1.43677 1.52157 1.69239 2.13111 2.31612 2.46522 2.63683 3.28213 3.56564 3.58788 3.69992 3.77135 3.85447 3.94500 3.99086 4.04996 4.10131 4.24095 4.26648 4.27794 4.39626 4.45069 4.54429 4.64604 4.75928 4.80581 4.86839 4.94309 4.95890 4.96483 5.03327 5.10588 5.16178 5.23276 5.34124 5.37137 5.39529 5.46566 5.53166 5.66615 5.69825 5.78496 5.83165 5.88741 6.23317 6.35205 6.52865 7.09421 7.27910 7.74291 8.36232 9.20938 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.002970 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.036098 B = 9424.110562 C =10494.112680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.061 4.061 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.615 5.615 10 C 0.169 3.831 11 C -0.118 4.118 12 C -0.081 4.081 13 H 0.058 0.942 14 C -0.105 4.105 15 C 0.111 3.889 16 N -0.586 5.586 17 C 0.570 3.430 18 O -0.605 6.605 19 C -0.275 4.275 20 C -0.113 4.113 21 C -0.050 4.050 22 N -0.341 5.341 23 C 0.055 3.945 24 C -0.149 4.149 25 C -0.095 4.095 26 C -0.134 4.134 27 C 0.091 3.909 28 C 0.130 3.870 29 C 0.162 3.838 30 H 0.026 0.974 31 H 0.248 0.752 32 H 0.046 0.954 33 H -0.009 1.009 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.171 0.829 41 H 0.219 0.781 42 H 0.211 0.789 43 H 0.189 0.811 44 H 0.158 0.842 45 H 0.118 0.882 46 H 0.042 0.958 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -29.725 -9.534 31.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.340 5.340 10 C 0.044 3.956 11 C -0.156 4.156 12 C -0.100 4.100 13 H 0.077 0.923 14 C -0.143 4.143 15 C -0.011 4.011 16 N -0.316 5.316 17 C 0.362 3.638 18 O -0.488 6.488 19 C -0.285 4.285 20 C -0.134 4.134 21 C -0.174 4.174 22 N -0.005 5.005 23 C -0.065 4.065 24 C -0.168 4.168 25 C -0.116 4.116 26 C -0.153 4.153 27 C -0.019 4.019 28 C 0.004 3.996 29 C 0.055 3.945 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.009 0.991 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.189 0.811 41 H 0.235 0.765 42 H 0.227 0.773 43 H 0.206 0.794 44 H 0.176 0.824 45 H 0.137 0.863 46 H 0.060 0.940 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.917 -29.306 -9.583 31.599 hybrid contribution 0.553 2.287 0.479 2.401 sum 7.470 -27.019 -9.104 29.474 Atomic orbital electron populations 1.70155 1.05919 1.25133 1.58228 1.25553 0.96669 1.00629 1.02516 0.85151 0.77661 0.79510 0.77492 1.21411 1.21299 1.19939 1.19300 0.90593 0.83929 1.42972 0.91275 1.45030 1.02539 1.00038 1.86441 1.21219 0.83214 0.93801 0.97329 1.22532 0.97297 0.94767 1.01051 1.20064 0.93926 0.94529 1.01522 0.92325 1.20407 1.02674 0.94333 0.96929 1.21227 0.89535 0.91400 0.98907 1.46601 1.18000 1.13889 1.53148 1.17971 0.81478 0.86136 0.78181 1.90731 1.39378 1.54356 1.64352 1.19182 0.95516 0.98115 1.15674 1.21420 0.99248 0.93981 0.98716 1.22336 0.81292 1.02890 1.10892 1.41793 1.09898 1.14275 1.34542 1.22598 0.88770 0.93713 1.01461 1.21289 0.95783 0.99831 0.99928 1.21510 1.00508 0.92789 0.96771 1.20695 0.90843 1.01219 1.02526 1.18652 0.94403 0.89576 0.99272 1.20857 0.99763 0.82540 0.96450 1.20402 0.94227 0.86356 0.93485 0.95564 0.94268 0.93610 0.99119 0.91679 0.88801 0.86777 0.90730 0.90973 0.87722 0.81130 0.76451 0.77261 0.79377 0.82435 0.86347 0.93988 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.53 10.23 21.65 0.22 -58.30 16 2 C -0.06 -3.64 5.48 84.86 0.47 -3.17 16 3 Si 0.97 48.80 29.55 68.60 2.03 50.83 16 4 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 7 C -0.24 -14.37 9.82 84.03 0.82 -13.54 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.62 -33.51 2.91 -675.76 -1.97 -35.47 16 10 C 0.17 8.60 5.53 86.82 0.48 9.08 16 11 C -0.12 -4.26 6.47 31.22 0.20 -4.06 16 12 C -0.08 -2.75 2.32 -12.64 -0.03 -2.78 16 13 H 0.06 1.96 8.01 -2.38 -0.02 1.94 16 14 C -0.11 -2.50 5.55 28.55 0.16 -2.34 16 15 C 0.11 2.80 4.89 86.10 0.42 3.22 16 16 N -0.59 -21.45 3.13 -845.02 -2.65 -24.10 16 17 C 0.57 22.29 7.43 86.31 0.64 22.93 16 18 O -0.60 -29.16 15.80 -4.58 -0.07 -29.23 16 19 C -0.28 -8.24 5.13 -19.76 -0.10 -8.34 16 20 C -0.11 -2.30 8.48 22.29 0.19 -2.11 16 21 C -0.05 -0.72 11.53 83.04 0.96 0.24 16 22 N -0.34 -5.95 2.92 -346.31 -1.01 -6.96 16 23 C 0.05 0.52 10.89 83.19 0.91 1.43 16 24 C -0.15 -1.36 9.98 22.03 0.22 -1.14 16 25 C -0.09 -1.49 10.09 22.33 0.23 -1.26 16 26 C -0.13 -3.40 9.91 22.32 0.22 -3.18 16 27 C 0.09 2.42 6.69 39.42 0.26 2.69 16 28 C 0.13 5.91 5.42 86.39 0.47 6.38 16 29 C 0.16 7.28 3.53 43.64 0.15 7.43 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.05 2.64 6.44 -2.39 -0.02 2.63 16 33 H -0.01 -0.51 8.11 -2.39 -0.02 -0.53 16 34 H 0.06 2.24 8.14 -2.38 -0.02 2.23 16 35 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.11 1.92 7.94 -2.39 -0.02 1.91 16 37 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 1.58 7.06 -2.38 -0.02 1.56 16 39 H 0.10 2.24 5.57 -2.39 -0.01 2.23 16 40 H 0.17 2.78 6.37 -2.91 -0.02 2.76 16 41 H 0.22 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.21 -0.05 8.06 -2.91 -0.02 -0.07 16 43 H 0.19 0.14 8.06 -2.91 -0.02 0.12 16 44 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.12 3.60 7.78 -2.91 -0.02 3.58 16 46 H 0.04 2.15 6.91 -2.39 -0.02 2.13 16 47 H 0.03 1.55 7.83 -2.39 -0.02 1.53 16 Total: -1.00 -87.11 367.94 4.19 -82.92 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.98 Total: 8.85 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.67 Total: 11.47 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -5.41 Total: -124.83 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.07 Total: -29.23 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -87.11 4.19 -82.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042149370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.913 kcal (2) G-P(sol) polarization free energy of solvation -87.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds