Wall clock time and date at job start Sat Apr 11 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86808 * 119.99980 * 2 1 4 4 H 1.48496 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47191 * 300.00342 * 3 2 1 6 6 H 1.48504 * 109.46666 * 60.00013 * 3 2 1 7 7 C 1.38809 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.39940 * 0.04469 * 9 7 2 11 11 C 1.55298 * 107.04141 * 184.96498 * 10 9 7 12 12 C 1.53698 * 101.81736 * 22.44555 * 11 10 9 13 13 H 1.09000 * 111.11669 * 78.60181 * 12 11 10 14 14 C 1.51978 * 114.99543 * 206.54552 * 12 11 10 15 15 C 1.53894 * 107.28911 * 175.42643 * 14 12 11 16 16 N 1.46633 * 110.79901 * 308.25539 * 15 14 12 17 17 C 1.34774 * 119.78646 * 227.68197 * 16 15 14 18 18 O 1.21611 * 120.00719 * 174.70442 * 17 16 15 19 19 C 1.47378 * 119.99400 * 354.70479 * 17 16 15 20 20 C 1.39311 * 120.34945 * 313.85463 * 19 17 16 21 21 C 1.38278 * 120.20474 * 180.02562 * 20 19 17 22 22 C 1.38055 * 120.87745 * 359.97438 * 21 20 19 23 23 C 1.38974 * 120.27572 * 0.02562 * 22 21 20 24 24 N 1.37801 * 133.37724 * 180.02562 * 23 22 21 25 25 H 0.96998 * 125.06931 * 359.97005 * 24 23 22 26 26 C 1.36553 * 109.84923 * 179.26669 * 24 23 22 27 27 C 1.34543 * 109.89752 * 0.67851 * 26 24 23 28 28 C 1.40669 * 119.51702 * 359.74262 * 23 22 21 29 29 C 1.47802 * 120.46232 * 47.54087 * 16 15 14 30 30 C 1.45505 * 126.39753 * 179.97438 * 9 7 2 31 31 H 1.09000 * 109.57227 * 265.88247 * 30 9 7 32 32 H 0.96996 * 119.99552 * 359.97438 * 1 2 3 33 33 H 1.09003 * 109.91403 * 304.31650 * 10 9 7 34 34 H 1.09001 * 109.91976 * 65.61620 * 10 9 7 35 35 H 1.09000 * 110.95522 * 140.57754 * 11 10 9 36 36 H 1.08995 * 110.95975 * 264.30733 * 11 10 9 37 37 H 1.08994 * 109.89373 * 294.87078 * 14 12 11 38 38 H 1.08998 * 109.89482 * 55.90894 * 14 12 11 39 39 H 1.08993 * 109.22603 * 68.50812 * 15 14 12 40 40 H 1.09002 * 109.22497 * 187.91244 * 15 14 12 41 41 H 1.08002 * 119.89831 * 0.02562 * 20 19 17 42 42 H 1.07999 * 119.55688 * 179.97438 * 21 20 19 43 43 H 1.08010 * 119.86279 * 180.02562 * 22 21 20 44 44 H 1.08000 * 125.04959 * 180.02562 * 26 24 23 45 45 H 1.08000 * 126.49672 * 179.44241 * 27 26 24 46 46 H 1.08996 * 110.06583 * 189.66728 * 29 16 15 47 47 H 1.09000 * 110.06301 * 68.20843 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1467 -2.5532 -0.0009 11 6 -0.4342 -4.0739 0.1277 12 6 0.8682 -4.5879 0.7617 13 1 0.8915 -4.3830 1.8321 14 6 1.1975 -6.0413 0.4638 15 6 2.5775 -6.3330 1.0793 16 7 3.5618 -5.3358 0.6469 17 6 4.7657 -5.7366 0.1926 18 8 5.5484 -4.9215 -0.2567 19 6 5.1337 -7.1629 0.2405 20 6 4.9066 -7.9102 1.3941 21 6 5.2536 -9.2481 1.4359 22 6 5.8274 -9.8657 0.3426 23 6 6.0666 -9.1470 -0.8226 24 7 6.6105 -9.4790 -2.0444 25 1 6.9390 -10.3586 -2.2878 26 6 6.6037 -8.3887 -2.8666 27 6 6.0818 -7.3307 -2.2197 28 6 5.7147 -7.7864 -0.8823 29 6 3.2418 -3.8940 0.7028 30 6 1.9082 -3.7214 -0.0016 31 1 1.9860 -4.0850 -1.0262 32 1 -0.4849 0.8400 0.0004 33 1 -0.5803 -2.0203 0.8453 34 1 -0.5627 -2.1743 -0.9345 35 1 -1.2854 -4.2556 0.7838 36 1 -0.5955 -4.5244 -0.8515 37 1 0.4464 -6.6913 0.9126 38 1 1.2297 -6.2010 -0.6139 39 1 2.4982 -6.3089 2.1660 40 1 2.9085 -7.3231 0.7655 41 1 4.4582 -7.4431 2.2585 42 1 5.0732 -9.8173 2.3358 43 1 6.0916 -10.9117 0.3931 44 1 6.9728 -8.3749 -3.8814 45 1 5.9576 -6.3334 -2.6151 46 1 4.0128 -3.3196 0.1892 47 1 3.1621 -3.5685 1.7400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042241870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:22 Heat of formation + Delta-G solvation = 65.492146 kcal Electronic energy + Delta-G solvation = -29777.843526 eV Core-core repulsion = 25926.915707 eV Total energy + Delta-G solvation = -3850.927819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48820 -40.00412 -38.17773 -36.80882 -35.25837 -32.83942 -32.22828 -31.16981 -30.12322 -29.27423 -28.75405 -28.21988 -24.85853 -24.37274 -22.91668 -22.30780 -21.81542 -21.08473 -20.10346 -19.82167 -19.21949 -17.75217 -17.02785 -16.47590 -16.09543 -15.61927 -15.25242 -15.07570 -14.79288 -14.55529 -14.26584 -14.14385 -13.82073 -13.52555 -13.21776 -13.10231 -12.94985 -12.78405 -12.65984 -12.19456 -11.93381 -11.78898 -11.74894 -11.55081 -11.42793 -11.18057 -10.87539 -10.73398 -10.70141 -10.07959 -9.93120 -9.90408 -9.78781 -9.61785 -9.50811 -9.38538 -8.58428 -8.42887 -8.32535 -7.85818 -6.80137 -5.67176 -3.00535 0.66648 1.38493 2.55723 2.85094 2.97180 3.21996 3.44841 3.51418 3.54103 3.77447 4.44558 4.55656 4.62786 4.74513 4.92457 4.96724 5.03365 5.10044 5.18241 5.23686 5.38250 5.45966 5.54866 5.60449 5.68560 5.72013 5.77253 5.84528 5.92640 5.99073 6.09905 6.14401 6.20461 6.21753 6.24834 6.26534 6.44175 6.46913 6.55265 6.58325 6.63134 6.79700 6.83285 6.90697 7.13034 7.29542 7.60482 7.63908 7.69333 7.86299 8.27944 8.42712 9.24263 9.87168 10.54087 11.45303 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.003080 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.834791 B = 9089.967641 C = 9885.762067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.104 3.896 16 N -0.600 5.600 17 C 0.556 3.444 18 O -0.532 6.532 19 C -0.073 4.073 20 C -0.114 4.114 21 C -0.106 4.106 22 C -0.114 4.114 23 C 0.089 3.911 24 N -0.597 5.597 25 H 0.415 0.585 26 C 0.049 3.951 27 C -0.189 4.189 28 C -0.066 4.066 29 C 0.117 3.883 30 C 0.157 3.843 31 H 0.024 0.976 32 H 0.251 0.749 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.173 0.827 45 H 0.151 0.849 46 H 0.092 0.908 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.122 -24.383 0.362 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.157 4.157 15 C -0.019 4.019 16 N -0.333 5.333 17 C 0.344 3.656 18 O -0.409 6.409 19 C -0.076 4.076 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.018 4.018 24 N -0.201 5.201 25 H 0.252 0.748 26 C -0.077 4.077 27 C -0.214 4.214 28 C -0.071 4.071 29 C -0.005 4.005 30 C 0.048 3.952 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.190 0.810 45 H 0.168 0.832 46 H 0.111 0.889 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.541 -23.754 0.054 25.243 hybrid contribution 0.493 0.488 -0.155 0.710 sum 9.034 -23.267 -0.101 24.959 Atomic orbital electron populations 1.69958 1.04876 1.24871 1.57272 1.24778 0.95679 0.97617 1.02284 0.86075 0.78955 0.83847 0.77166 1.20348 1.21799 1.21813 1.19109 0.90497 0.82267 1.43484 0.90188 1.44186 1.01663 0.99231 1.86669 1.21539 0.83697 0.88494 1.00930 1.22728 0.96031 0.99649 0.99235 1.22287 0.97381 0.93506 1.00169 0.90464 1.21797 0.95365 0.97317 1.01266 1.21935 0.89166 0.91896 0.98891 1.48205 1.13676 1.07859 1.63563 1.18254 0.81948 0.87769 0.77641 1.90793 1.50563 1.54389 1.45184 1.19359 1.00958 0.93320 0.93994 1.21150 1.00896 0.94017 0.97306 1.20692 0.99449 0.94524 0.97823 1.20103 1.02977 0.99301 0.91115 1.18151 1.01230 0.94541 0.87887 1.41703 1.55400 1.12239 1.10752 0.74820 1.21897 1.03100 0.86110 0.96545 1.21839 1.07179 0.99479 0.92929 1.18954 1.01488 0.92364 0.94317 1.21728 0.99110 0.78317 1.01362 1.20987 0.91046 0.87508 0.95662 0.95880 0.93874 0.92640 0.94496 0.92275 0.92616 0.90918 0.91477 0.91780 0.89660 0.85121 0.85131 0.86074 0.81022 0.83154 0.88940 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 10.44 55.49 0.58 -26.71 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.23 -6.34 9.88 -15.06 -0.15 -6.49 16 8 H 0.08 2.22 7.41 -52.49 -0.39 1.83 16 9 N -0.59 -15.19 3.35 -162.87 -0.55 -15.74 16 10 C 0.18 4.32 5.45 -1.91 -0.01 4.31 16 11 C -0.14 -2.56 6.54 -25.15 -0.16 -2.72 16 12 C -0.11 -1.97 2.61 -89.50 -0.23 -2.20 16 13 H 0.08 1.37 8.13 -51.93 -0.42 0.94 16 14 C -0.12 -1.61 5.72 -26.78 -0.15 -1.76 16 15 C 0.10 1.33 4.92 -3.50 -0.02 1.32 16 16 N -0.60 -9.90 3.02 -173.98 -0.52 -10.43 16 17 C 0.56 9.74 7.16 -12.54 -0.09 9.65 16 18 O -0.53 -11.30 16.18 5.27 0.09 -11.22 16 19 C -0.07 -1.04 4.84 -104.75 -0.51 -1.55 16 20 C -0.11 -1.26 7.53 -39.17 -0.30 -1.56 16 21 C -0.11 -0.94 9.99 -39.63 -0.40 -1.33 16 22 C -0.11 -1.01 10.05 -39.38 -0.40 -1.41 16 23 C 0.09 0.96 7.27 -83.99 -0.61 0.35 16 24 N -0.60 -4.94 6.06 -10.66 -0.06 -5.00 16 25 H 0.42 1.92 8.96 -40.82 -0.37 1.55 16 26 C 0.05 0.45 11.82 -16.76 -0.20 0.25 16 27 C -0.19 -2.48 10.76 -37.79 -0.41 -2.89 16 28 C -0.07 -0.91 6.12 -104.85 -0.64 -1.55 16 29 C 0.12 2.31 5.70 -3.93 -0.02 2.29 16 30 C 0.16 3.32 2.77 -67.80 -0.19 3.13 16 31 H 0.02 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.06 1.48 7.21 -51.93 -0.37 1.11 16 34 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.96 7.97 -51.93 -0.41 0.55 16 39 H 0.06 0.72 8.01 -51.93 -0.42 0.30 16 40 H 0.09 0.97 5.18 -51.93 -0.27 0.70 16 41 H 0.13 1.28 7.01 -52.49 -0.37 0.91 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 46 H 0.09 2.06 6.74 -51.93 -0.35 1.71 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -34.80 369.94 -11.19 -45.99 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.70 Total: 2.41 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -4.58 Total: -2.49 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.56 Total: -57.87 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.80 -11.19 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042241870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.486 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds