Wall clock time and date at job start Sat Apr 11 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86808 * 119.99980 * 2 1 4 4 H 1.48496 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47191 * 300.00342 * 3 2 1 6 6 H 1.48504 * 109.46666 * 60.00013 * 3 2 1 7 7 C 1.38809 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.39940 * 0.04469 * 9 7 2 11 11 C 1.55298 * 107.04141 * 184.96498 * 10 9 7 12 12 C 1.53698 * 101.81736 * 22.44555 * 11 10 9 13 13 H 1.09000 * 111.11669 * 78.60181 * 12 11 10 14 14 C 1.51978 * 114.99543 * 206.54552 * 12 11 10 15 15 C 1.53894 * 107.28911 * 175.42643 * 14 12 11 16 16 N 1.46633 * 110.79901 * 308.25539 * 15 14 12 17 17 C 1.34774 * 119.78646 * 227.68197 * 16 15 14 18 18 O 1.21611 * 120.00719 * 174.70442 * 17 16 15 19 19 C 1.47378 * 119.99400 * 354.70479 * 17 16 15 20 20 C 1.39311 * 120.34945 * 313.85463 * 19 17 16 21 21 C 1.38278 * 120.20474 * 180.02562 * 20 19 17 22 22 C 1.38055 * 120.87745 * 359.97438 * 21 20 19 23 23 C 1.38974 * 120.27572 * 0.02562 * 22 21 20 24 24 N 1.37801 * 133.37724 * 180.02562 * 23 22 21 25 25 H 0.96998 * 125.06931 * 359.97005 * 24 23 22 26 26 C 1.36553 * 109.84923 * 179.26669 * 24 23 22 27 27 C 1.34543 * 109.89752 * 0.67851 * 26 24 23 28 28 C 1.40669 * 119.51702 * 359.74262 * 23 22 21 29 29 C 1.47802 * 120.46232 * 47.54087 * 16 15 14 30 30 C 1.45505 * 126.39753 * 179.97438 * 9 7 2 31 31 H 1.09000 * 109.57227 * 265.88247 * 30 9 7 32 32 H 0.96996 * 119.99552 * 359.97438 * 1 2 3 33 33 H 1.09003 * 109.91403 * 304.31650 * 10 9 7 34 34 H 1.09001 * 109.91976 * 65.61620 * 10 9 7 35 35 H 1.09000 * 110.95522 * 140.57754 * 11 10 9 36 36 H 1.08995 * 110.95975 * 264.30733 * 11 10 9 37 37 H 1.08994 * 109.89373 * 294.87078 * 14 12 11 38 38 H 1.08998 * 109.89482 * 55.90894 * 14 12 11 39 39 H 1.08993 * 109.22603 * 68.50812 * 15 14 12 40 40 H 1.09002 * 109.22497 * 187.91244 * 15 14 12 41 41 H 1.08002 * 119.89831 * 0.02562 * 20 19 17 42 42 H 1.07999 * 119.55688 * 179.97438 * 21 20 19 43 43 H 1.08010 * 119.86279 * 180.02562 * 22 21 20 44 44 H 1.08000 * 125.04959 * 180.02562 * 26 24 23 45 45 H 1.08000 * 126.49672 * 179.44241 * 27 26 24 46 46 H 1.08996 * 110.06583 * 189.66728 * 29 16 15 47 47 H 1.09000 * 110.06301 * 68.20843 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1467 -2.5532 -0.0009 11 6 -0.4342 -4.0739 0.1277 12 6 0.8682 -4.5879 0.7617 13 1 0.8915 -4.3830 1.8321 14 6 1.1975 -6.0413 0.4638 15 6 2.5775 -6.3330 1.0793 16 7 3.5618 -5.3358 0.6469 17 6 4.7657 -5.7366 0.1926 18 8 5.5484 -4.9215 -0.2567 19 6 5.1337 -7.1629 0.2405 20 6 4.9066 -7.9102 1.3941 21 6 5.2536 -9.2481 1.4359 22 6 5.8274 -9.8657 0.3426 23 6 6.0666 -9.1470 -0.8226 24 7 6.6105 -9.4790 -2.0444 25 1 6.9390 -10.3586 -2.2878 26 6 6.6037 -8.3887 -2.8666 27 6 6.0818 -7.3307 -2.2197 28 6 5.7147 -7.7864 -0.8823 29 6 3.2418 -3.8940 0.7028 30 6 1.9082 -3.7214 -0.0016 31 1 1.9860 -4.0850 -1.0262 32 1 -0.4849 0.8400 0.0004 33 1 -0.5803 -2.0203 0.8453 34 1 -0.5627 -2.1743 -0.9345 35 1 -1.2854 -4.2556 0.7838 36 1 -0.5955 -4.5244 -0.8515 37 1 0.4464 -6.6913 0.9126 38 1 1.2297 -6.2010 -0.6139 39 1 2.4982 -6.3089 2.1660 40 1 2.9085 -7.3231 0.7655 41 1 4.4582 -7.4431 2.2585 42 1 5.0732 -9.8173 2.3358 43 1 6.0916 -10.9117 0.3931 44 1 6.9728 -8.3749 -3.8814 45 1 5.9576 -6.3334 -2.6151 46 1 4.0128 -3.3196 0.1892 47 1 3.1621 -3.5685 1.7400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042241870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:21 Heat of formation + Delta-G solvation = 42.969523 kcal Electronic energy + Delta-G solvation = -29778.820180 eV Core-core repulsion = 25926.915707 eV Total energy + Delta-G solvation = -3851.904473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.33317 -41.32674 -39.68125 -37.68957 -36.80311 -34.67348 -33.16727 -32.81460 -31.33443 -30.42167 -29.99599 -29.56377 -26.57373 -25.91252 -24.07500 -23.58649 -22.67038 -22.04716 -21.80509 -21.25846 -20.45945 -18.92254 -18.48501 -17.91220 -17.18620 -16.84386 -16.61971 -16.31003 -16.15367 -15.80941 -15.65869 -15.32437 -15.22872 -14.86019 -14.62234 -14.39465 -14.06414 -13.96052 -13.83795 -13.57167 -13.51342 -13.16208 -13.10328 -12.79999 -12.66317 -12.61606 -12.42520 -12.35917 -12.08557 -11.98000 -11.77893 -11.54918 -11.33734 -11.03597 -10.91983 -10.75116 -10.63267 -9.71102 -9.19678 -8.92465 -8.67009 -7.88072 -5.23036 -0.18179 0.61535 1.42150 1.42751 1.53820 1.58205 1.79432 1.97609 2.25676 2.47855 2.89239 3.29942 3.40952 3.53872 3.79027 3.92020 3.94566 3.99014 4.07193 4.20714 4.26509 4.28216 4.29901 4.35079 4.43563 4.53468 4.61778 4.64579 4.73341 4.82164 4.85808 4.90795 4.91897 4.96738 5.08555 5.10164 5.14482 5.23464 5.37866 5.45025 5.48757 5.51227 5.60362 5.65235 5.69210 5.70555 5.77146 6.12516 6.17640 6.40040 6.73826 7.06872 7.11177 7.74584 8.41734 9.23053 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.003080 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.834791 B = 9089.967641 C = 9885.762067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.081 0.919 14 C -0.110 4.110 15 C 0.100 3.900 16 N -0.598 5.598 17 C 0.551 3.449 18 O -0.589 6.589 19 C -0.112 4.112 20 C -0.103 4.103 21 C -0.104 4.104 22 C -0.095 4.095 23 C 0.077 3.923 24 N -0.579 5.579 25 H 0.436 0.564 26 C 0.086 3.914 27 C -0.254 4.254 28 C -0.097 4.097 29 C 0.130 3.870 30 C 0.149 3.851 31 H 0.000 1.000 32 H 0.248 0.752 33 H 0.026 0.974 34 H -0.002 1.002 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.144 0.856 42 H 0.171 0.829 43 H 0.161 0.839 44 H 0.211 0.789 45 H 0.117 0.883 46 H 0.052 0.948 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 -29.452 1.807 30.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.099 0.901 14 C -0.148 4.148 15 C -0.021 4.021 16 N -0.330 5.330 17 C 0.341 3.659 18 O -0.470 6.470 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.030 4.030 24 N -0.184 5.184 25 H 0.277 0.723 26 C -0.042 4.042 27 C -0.279 4.279 28 C -0.103 4.103 29 C 0.006 3.994 30 C 0.041 3.959 31 H 0.018 0.982 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.161 0.839 42 H 0.188 0.812 43 H 0.179 0.821 44 H 0.228 0.772 45 H 0.135 0.865 46 H 0.071 0.929 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.913 -28.914 1.518 30.294 hybrid contribution 0.445 1.982 -0.680 2.142 sum 9.357 -26.932 0.838 28.524 Atomic orbital electron populations 1.70155 1.06017 1.25205 1.58245 1.25553 0.96607 1.00648 1.02611 0.85100 0.77957 0.79856 0.77018 1.19805 1.21757 1.21226 1.19338 0.90545 0.83840 1.42942 0.90966 1.44457 1.02642 1.00258 1.86475 1.21367 0.82772 0.92548 0.97648 1.22607 0.97741 0.94822 1.00824 1.22219 0.94537 0.95258 0.99477 0.90051 1.21801 0.96854 0.94851 1.01284 1.22269 0.87661 0.91655 1.00479 1.48264 1.14492 1.06823 1.63403 1.18984 0.81399 0.89249 0.76225 1.90743 1.52291 1.56302 1.47703 1.19186 1.04785 0.91352 0.96221 1.21390 0.99810 0.94946 0.96113 1.21134 0.98419 0.93504 0.99266 1.20629 1.00340 1.00879 0.89696 1.18388 1.01789 0.93428 0.89416 1.41702 1.54096 1.12889 1.09732 0.72261 1.22325 0.99530 0.84943 0.97416 1.21781 1.11829 0.99728 0.94529 1.19264 1.02276 0.94304 0.94406 1.21296 0.97056 0.80676 1.00372 1.21097 0.93228 0.86294 0.95269 0.98218 0.94292 0.95609 0.98350 0.89193 0.91504 0.86473 0.92399 0.88956 0.87404 0.83856 0.81170 0.82112 0.77207 0.86464 0.92908 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.67 10.44 21.65 0.23 -58.45 16 2 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 3 Si 0.97 48.47 29.55 68.60 2.03 50.49 16 4 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.24 -14.16 9.88 84.03 0.83 -13.33 16 8 H 0.07 4.30 7.41 -2.91 -0.02 4.28 16 9 N -0.61 -33.24 3.35 -669.21 -2.24 -35.48 16 10 C 0.18 9.20 5.45 86.85 0.47 9.68 16 11 C -0.12 -4.41 6.54 31.62 0.21 -4.20 16 12 C -0.10 -3.19 2.61 -10.07 -0.03 -3.22 16 13 H 0.08 2.71 8.13 -2.39 -0.02 2.69 16 14 C -0.11 -2.64 5.72 30.56 0.17 -2.47 16 15 C 0.10 2.33 4.92 86.66 0.43 2.75 16 16 N -0.60 -20.25 3.02 -822.60 -2.48 -22.73 16 17 C 0.55 20.48 7.16 86.65 0.62 21.10 16 18 O -0.59 -27.68 16.18 -4.07 -0.07 -27.74 16 19 C -0.11 -3.21 4.84 -19.95 -0.10 -3.30 16 20 C -0.10 -2.00 7.53 22.54 0.17 -1.83 16 21 C -0.10 -1.33 9.99 22.24 0.22 -1.11 16 22 C -0.10 -1.22 10.05 22.40 0.23 -0.99 16 23 C 0.08 1.46 7.27 38.98 0.28 1.74 16 24 N -0.58 -7.73 6.06 -187.63 -1.14 -8.87 16 25 H 0.44 2.10 8.96 -92.71 -0.83 1.27 16 26 C 0.09 1.45 11.82 83.11 0.98 2.43 16 27 C -0.25 -7.06 10.76 23.43 0.25 -6.81 16 28 C -0.10 -2.70 6.12 -20.01 -0.12 -2.82 16 29 C 0.13 5.45 5.70 85.74 0.49 5.94 16 30 C 0.15 6.60 2.77 45.61 0.13 6.73 16 31 H 0.00 0.02 7.90 -2.39 -0.02 0.00 16 32 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.03 1.44 7.21 -2.39 -0.02 1.42 16 34 H 0.00 -0.10 7.77 -2.39 -0.02 -0.12 16 35 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 37 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.54 7.97 -2.39 -0.02 1.52 16 39 H 0.09 1.69 8.01 -2.39 -0.02 1.67 16 40 H 0.11 2.11 5.18 -2.39 -0.01 2.09 16 41 H 0.14 2.31 7.01 -2.91 -0.02 2.29 16 42 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 44 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 46 H 0.05 2.61 6.74 -2.39 -0.02 2.59 16 47 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -86.51 369.94 2.20 -84.32 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.16 Total: 11.35 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.70 Total: 7.11 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -5.63 Total: -125.52 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.07 Total: -27.74 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.49 kcal Total: -86.51 2.20 -84.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042241870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.287 kcal (2) G-P(sol) polarization free energy of solvation -86.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds