Wall clock time and date at job start Sat Apr 11 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00355 * 2 1 4 4 H 1.48496 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46771 * 300.00267 * 3 2 1 6 6 H 1.48502 * 109.46590 * 60.00050 * 3 2 1 7 7 C 1.38821 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.47437 * 126.06288 * 359.97438 * 9 7 2 11 11 C 1.54493 * 107.14928 * 181.65040 * 10 9 7 12 12 C 1.56024 * 102.61918 * 22.83920 * 11 10 9 13 13 H 1.08993 * 112.86369 * 202.94005 * 12 11 10 14 14 C 1.53094 * 106.39395 * 78.38328 * 12 11 10 15 15 C 1.52837 * 110.57290 * 195.42036 * 14 12 11 16 16 N 1.47159 * 107.97626 * 57.35692 * 15 14 12 17 17 C 1.34776 * 121.21436 * 122.73435 * 16 15 14 18 18 O 1.21594 * 119.99910 * 354.14022 * 17 16 15 19 19 C 1.47575 * 120.00102 * 174.14077 * 17 16 15 20 20 C 1.40240 * 119.83097 * 319.54904 * 19 17 16 21 21 C 1.36200 * 120.37927 * 179.75563 * 20 19 17 22 22 C 1.39918 * 119.95693 * 0.51393 * 21 20 19 23 23 C 1.46251 * 133.83838 * 179.76462 * 22 21 20 24 24 C 1.34452 * 107.03503 * 179.97438 * 23 22 21 25 25 N 1.36561 * 109.97813 * 359.97438 * 24 23 22 26 26 H 0.96993 * 125.07029 * 179.97438 * 25 24 23 27 27 C 1.37821 * 109.85937 * 0.02562 * 25 24 23 28 28 C 1.38689 * 133.37695 * 180.02562 * 27 25 24 29 29 C 1.46754 * 117.56748 * 302.71395 * 16 15 14 30 30 C 1.46470 * 126.05728 * 180.02562 * 9 7 2 31 31 H 1.08997 * 108.41955 * 269.21110 * 30 9 7 32 32 H 0.97000 * 120.00107 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.89942 * 301.02778 * 10 9 7 34 34 H 1.08997 * 109.90206 * 62.08625 * 10 9 7 35 35 H 1.09002 * 110.78535 * 141.12416 * 11 10 9 36 36 H 1.09005 * 110.78122 * 264.36960 * 11 10 9 37 37 H 1.08999 * 109.25765 * 315.70576 * 14 12 11 38 38 H 1.08998 * 109.25263 * 75.18090 * 14 12 11 39 39 H 1.09005 * 109.76299 * 176.97865 * 15 14 12 40 40 H 1.08997 * 109.76137 * 297.73799 * 15 14 12 41 41 H 1.08004 * 119.80903 * 0.02562 * 20 19 17 42 42 H 1.07998 * 120.02571 * 180.25224 * 21 20 19 43 43 H 1.08000 * 126.47890 * 359.97359 * 23 22 21 44 44 H 1.08001 * 125.00924 * 180.02562 * 24 23 22 45 45 H 1.07995 * 120.16466 * 359.97438 * 28 27 25 46 46 H 1.09003 * 109.22569 * 292.19542 * 29 16 15 47 47 H 1.09003 * 109.22564 * 172.83779 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1407 -2.5438 0.0005 11 6 -0.4379 -4.0592 0.0426 12 6 0.8722 -4.6467 0.6533 13 1 1.0215 -5.6972 0.4044 14 6 0.7979 -4.3923 2.1612 15 6 2.1717 -4.5763 2.8052 16 7 3.1112 -3.6589 2.1410 17 6 3.8047 -2.7406 2.8427 18 8 3.5826 -2.5866 4.0283 19 6 4.8335 -1.9221 2.1723 20 6 5.6877 -2.5109 1.2288 21 6 6.6379 -1.7649 0.5997 22 6 6.7721 -0.4054 0.9020 23 6 7.6632 0.6541 0.4303 24 6 7.3217 1.7770 1.0862 25 7 6.2852 1.5229 1.9381 26 1 5.8669 2.1783 2.5180 27 6 5.9227 0.1960 1.8518 28 6 4.9541 -0.5698 2.4833 29 6 3.2659 -3.7806 0.6867 30 6 1.9198 -3.7268 -0.0005 31 1 2.0465 -4.0473 -1.0346 32 1 -0.4850 0.8400 0.0004 33 1 -0.5647 -2.0580 0.8794 34 1 -0.5610 -2.1054 -0.9046 35 1 -1.2923 -4.2682 0.6864 36 1 -0.6081 -4.4480 -0.9614 37 1 0.4518 -3.3738 2.3373 38 1 0.0944 -5.0936 2.6098 39 1 2.1152 -4.3403 3.8679 40 1 2.5059 -5.6053 2.6729 41 1 5.5887 -3.5610 0.9965 42 1 7.2900 -2.2233 -0.1290 43 1 8.4472 0.5534 -0.3056 44 1 7.7967 2.7384 0.9575 45 1 4.2971 -0.1200 3.2128 46 1 3.7495 -4.7297 0.4554 47 1 3.8881 -2.9633 0.3222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042249257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:38 Heat of formation + Delta-G solvation = 66.600655 kcal Electronic energy + Delta-G solvation = -31267.665543 eV Core-core repulsion = 27416.785793 eV Total energy + Delta-G solvation = -3850.879750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.09794 -39.94516 -38.15115 -36.33779 -34.79709 -32.99253 -31.78328 -31.27294 -29.52014 -29.10642 -28.69971 -28.13721 -24.80896 -24.03739 -23.28705 -22.23137 -21.80873 -20.57901 -19.96904 -19.71653 -18.42790 -17.84158 -16.77070 -16.52090 -15.80974 -15.43278 -14.95848 -14.72127 -14.45593 -14.24966 -14.00963 -13.93849 -13.78928 -13.57577 -13.27424 -13.07439 -12.74170 -12.57017 -12.51794 -12.03147 -11.67592 -11.57879 -11.42960 -11.32284 -11.12423 -10.85941 -10.82457 -10.78795 -10.73969 -10.12164 -9.89346 -9.78252 -9.63542 -9.55341 -9.47903 -9.30619 -8.56381 -8.12396 -7.94754 -7.54702 -6.77552 -5.67378 -2.98593 1.17005 1.74312 2.78183 3.10768 3.36609 3.37642 3.44062 3.47814 3.59339 4.22872 4.51860 4.83250 4.93446 4.99187 5.09001 5.28712 5.31536 5.40701 5.49058 5.53822 5.58121 5.62061 5.72749 5.77151 5.81119 5.84591 5.89616 6.00047 6.05675 6.07407 6.19418 6.22316 6.28066 6.33029 6.42608 6.55251 6.61565 6.69653 6.70403 6.71544 6.82231 6.89865 7.04534 7.09770 7.30306 7.61244 7.61747 7.65379 7.87164 7.93508 8.28405 8.67147 9.25255 9.87351 10.53559 11.45134 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.005765 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.373369 B = 4855.357194 C = 6261.810979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.211 4.211 8 H 0.079 0.921 9 N -0.588 5.588 10 C 0.178 3.822 11 C -0.144 4.144 12 C -0.102 4.102 13 H 0.075 0.925 14 C -0.121 4.121 15 C 0.116 3.884 16 N -0.586 5.586 17 C 0.576 3.424 18 O -0.554 6.554 19 C -0.094 4.094 20 C -0.116 4.116 21 C -0.082 4.082 22 C -0.091 4.091 23 C -0.211 4.211 24 C 0.054 3.946 25 N -0.593 5.593 26 H 0.415 0.585 27 C 0.090 3.910 28 C -0.059 4.059 29 C 0.098 3.902 30 C 0.153 3.847 31 H 0.027 0.973 32 H 0.249 0.751 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.145 0.855 44 H 0.168 0.832 45 H 0.126 0.874 46 H 0.058 0.942 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.146 -5.242 1.230 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.201 4.201 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.339 4.339 8 H 0.096 0.904 9 N -0.313 5.313 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.122 4.122 13 H 0.094 0.906 14 C -0.159 4.159 15 C -0.006 4.006 16 N -0.317 5.317 17 C 0.366 3.634 18 O -0.434 6.434 19 C -0.098 4.098 20 C -0.135 4.135 21 C -0.100 4.100 22 C -0.096 4.096 23 C -0.236 4.236 24 C -0.074 4.074 25 N -0.195 5.195 26 H 0.251 0.749 27 C -0.017 4.017 28 C -0.080 4.080 29 C -0.025 4.025 30 C 0.045 3.955 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.186 0.814 45 H 0.144 0.856 46 H 0.076 0.924 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.934 -4.814 1.911 12.099 hybrid contribution -0.040 1.464 0.023 1.464 sum 10.895 -3.350 1.934 11.561 Atomic orbital electron populations 1.69950 1.04746 1.24538 1.57698 1.24663 0.95487 0.97213 1.02757 0.86269 0.79656 0.84721 0.76995 1.19601 1.22093 1.22233 1.18966 0.90310 0.82072 1.42566 0.90357 1.44269 1.01468 0.99185 1.86405 1.21211 0.84250 0.88378 1.00800 1.23152 0.96203 0.99660 0.99177 1.22390 0.97066 0.97706 0.95013 0.90643 1.21811 0.95844 1.03309 0.94953 1.21514 0.89148 0.91886 0.98064 1.47672 1.41543 1.34528 1.07996 1.18043 0.80601 0.78809 0.85971 1.90717 1.68521 1.68229 1.15939 1.19323 0.97788 0.93490 0.99210 1.20745 0.96091 1.00091 0.96581 1.20067 0.98482 0.91659 0.99822 1.19292 0.97705 0.94063 0.98551 1.21645 1.04310 0.91606 1.06079 1.21797 0.91611 0.99838 0.94127 1.41755 1.31112 1.08566 1.38033 0.74853 1.18029 0.98834 0.84385 1.00412 1.19934 0.96337 0.92225 0.99484 1.21899 0.99550 1.01645 0.79436 1.20693 0.91115 0.87926 0.95796 0.95541 0.94080 0.93739 0.94085 0.92347 0.92775 0.90142 0.92157 0.89625 0.92031 0.85451 0.85750 0.83699 0.81441 0.85632 0.92415 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.38 55.49 0.58 -26.53 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.89 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.21 -5.62 9.70 -15.06 -0.15 -5.76 16 8 H 0.08 2.07 6.41 -52.49 -0.34 1.73 16 9 N -0.59 -14.14 3.20 -164.45 -0.53 -14.67 16 10 C 0.18 4.23 4.62 -2.75 -0.01 4.22 16 11 C -0.14 -2.61 6.33 -24.33 -0.15 -2.76 16 12 C -0.10 -1.70 3.68 -88.44 -0.33 -2.02 16 13 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 14 C -0.12 -2.03 5.04 -26.77 -0.13 -2.16 16 15 C 0.12 1.88 6.44 -3.77 -0.02 1.86 16 16 N -0.59 -10.68 2.97 -175.32 -0.52 -11.20 16 17 C 0.58 11.69 7.31 -12.45 -0.09 11.60 16 18 O -0.55 -12.64 16.39 5.28 0.09 -12.55 16 19 C -0.09 -1.76 5.03 -104.95 -0.53 -2.29 16 20 C -0.12 -1.83 7.32 -39.56 -0.29 -2.12 16 21 C -0.08 -1.22 10.03 -39.69 -0.40 -1.61 16 22 C -0.09 -1.47 6.37 -105.04 -0.67 -2.13 16 23 C -0.21 -2.79 11.08 -37.70 -0.42 -3.21 16 24 C 0.05 0.64 11.81 -16.78 -0.20 0.44 16 25 N -0.59 -8.31 6.07 -10.68 -0.06 -8.37 16 26 H 0.41 4.77 8.96 -40.82 -0.37 4.41 16 27 C 0.09 1.55 7.26 -84.00 -0.61 0.94 16 28 C -0.06 -1.11 9.64 -39.03 -0.38 -1.49 16 29 C 0.10 1.69 4.14 -4.79 -0.02 1.67 16 30 C 0.15 2.94 2.96 -68.32 -0.20 2.74 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.04 1.19 7.04 -51.93 -0.37 0.83 16 34 H 0.04 1.09 7.56 -51.93 -0.39 0.70 16 35 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.70 6.85 -51.93 -0.36 1.34 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.47 7.06 -51.93 -0.37 1.10 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.13 1.73 6.57 -52.48 -0.34 1.39 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 44 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.13 2.44 8.05 -52.49 -0.42 2.02 16 46 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 47 H 0.10 1.86 3.33 -51.93 -0.17 1.69 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -33.99 365.22 -11.14 -45.12 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.47 Total: 7.71 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -4.69 Total: -2.34 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.54 Total: -60.78 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.99 -11.14 -45.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042249257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.723 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds