Wall clock time and date at job start Sat Apr 11 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99557 * 2 1 4 4 H 1.48500 * 109.47100 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47183 * 299.99970 * 3 2 1 6 6 H 1.48499 * 109.47164 * 59.99909 * 3 2 1 7 7 C 1.38807 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99980 * 197.45135 * 7 2 1 9 9 N 1.36937 * 120.00353 * 17.44576 * 7 2 1 10 10 C 1.46924 * 120.63583 * 207.55882 * 9 7 2 11 11 C 1.53194 * 108.89424 * 233.68360 * 10 9 7 12 12 C 1.53033 * 109.31120 * 305.29300 * 11 10 9 13 13 H 1.09003 * 109.46224 * 301.35968 * 12 11 10 14 14 C 1.50705 * 109.46048 * 181.38711 * 12 11 10 15 15 C 1.38237 * 119.99826 * 127.22036 * 14 12 11 16 16 C 1.38236 * 119.99425 * 179.78706 * 15 14 12 17 17 C 1.38229 * 120.00230 * 0.46825 * 16 15 14 18 18 C 1.38240 * 120.00205 * 359.76134 * 17 16 15 19 19 C 1.38232 * 119.99818 * 307.49281 * 14 12 11 20 20 C 1.53046 * 109.54216 * 61.36578 * 12 11 10 21 21 H 1.08992 * 109.50338 * 178.64915 * 20 12 11 22 22 N 1.46500 * 109.49339 * 58.58480 * 20 12 11 23 23 C 1.34769 * 119.99906 * 140.58889 * 22 20 12 24 24 O 1.21631 * 120.00153 * 359.97438 * 23 22 20 25 25 C 1.47271 * 120.00331 * 179.97438 * 23 22 20 26 26 C 1.46682 * 126.93783 * 359.68169 * 25 23 22 27 27 C 1.34484 * 106.33294 * 179.88774 * 26 25 23 28 28 N 1.36449 * 108.85643 * 0.37896 * 27 26 25 29 29 H 0.96997 * 124.85355 * 179.72623 * 28 27 26 30 30 C 1.34658 * 110.29557 * 359.74418 * 28 27 26 31 31 C 1.47208 * 120.80707 * 27.70550 * 9 7 2 32 32 H 0.96994 * 120.00558 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.58253 * 113.81976 * 10 9 7 34 34 H 1.08997 * 109.58300 * 353.53992 * 10 9 7 35 35 H 1.08997 * 109.49401 * 65.24355 * 11 10 9 36 36 H 1.08998 * 109.49241 * 185.31148 * 11 10 9 37 37 H 1.07993 * 119.99910 * 359.97438 * 15 14 12 38 38 H 1.07995 * 119.99780 * 180.24988 * 16 15 14 39 39 H 1.07996 * 120.00335 * 179.78987 * 17 16 15 40 40 H 1.08000 * 120.00096 * 180.02562 * 18 17 16 41 41 H 1.08003 * 119.99913 * 359.97438 * 19 14 12 42 42 H 0.97007 * 119.99888 * 320.58125 * 22 20 12 43 43 H 1.08006 * 126.83524 * 0.02562 * 26 25 23 44 44 H 1.08003 * 125.57311 * 180.15781 * 27 26 25 45 45 H 1.08001 * 125.80249 * 180.02562 * 30 28 27 46 46 H 1.08996 * 109.53488 * 6.53659 * 31 9 7 47 47 H 1.09002 * 109.55982 * 246.15116 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0531 -1.2236 0.2800 9 7 1.3730 -2.3606 -0.3566 10 6 1.8210 -3.6552 0.1744 11 6 2.0790 -4.6091 -0.9962 12 6 0.8241 -4.6911 -1.8682 13 1 -0.0147 -5.0397 -1.2656 14 6 1.0626 -5.6550 -3.0019 15 6 0.1739 -6.6894 -3.2281 16 6 0.3904 -7.5709 -4.2708 17 6 1.5005 -7.4237 -5.0811 18 6 2.3917 -6.3920 -4.8520 19 6 2.1729 -5.5079 -3.8120 20 6 0.5033 -3.3063 -2.4353 21 1 -0.3765 -3.3701 -3.0754 22 7 1.6433 -2.8225 -3.2179 23 6 1.4350 -2.1544 -4.3697 24 8 0.3006 -1.9536 -4.7597 25 6 2.5810 -1.6675 -5.1562 26 6 4.0027 -1.8177 -4.8282 27 6 4.6852 -1.2254 -5.8242 28 7 3.7966 -0.7194 -6.7277 29 1 4.0395 -0.2409 -7.5357 30 6 2.5344 -0.9789 -6.3369 31 6 0.2275 -2.3376 -1.2809 32 1 -0.4850 0.8399 0.0004 33 1 1.0492 -4.0714 0.8218 34 1 2.7405 -3.5182 0.7436 35 1 2.9123 -4.2368 -1.5920 36 1 2.3207 -5.5999 -0.6115 37 1 -0.6909 -6.8071 -2.5922 38 1 -0.3059 -8.3766 -4.4500 39 1 1.6715 -8.1143 -5.8936 40 1 3.2588 -6.2767 -5.4854 41 1 2.8692 -4.7021 -3.6328 42 1 2.5481 -2.9828 -2.9070 43 1 4.4188 -2.3084 -3.9607 44 1 5.7608 -1.1579 -5.8954 45 1 1.6376 -0.6922 -6.8662 46 1 0.0963 -1.3293 -1.6736 47 1 -0.6743 -2.6465 -0.7523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087428640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:13 Heat of formation + Delta-G solvation = 62.277005 kcal Electronic energy + Delta-G solvation = -30580.388451 eV Core-core repulsion = 26729.321214 eV Total energy + Delta-G solvation = -3851.067238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91816 -39.86434 -38.30699 -36.96890 -33.94396 -32.72121 -31.28779 -30.92100 -30.67983 -29.15716 -28.94036 -28.53464 -25.19598 -23.31066 -22.74965 -22.33904 -21.49793 -20.72377 -20.52549 -19.22726 -18.60043 -18.57906 -16.82796 -16.45670 -15.87182 -15.21497 -14.87102 -14.75752 -14.57209 -14.36520 -13.84597 -13.73878 -13.60129 -13.49839 -13.17823 -13.06417 -13.00966 -12.83424 -12.72423 -12.30190 -12.16650 -11.86704 -11.55747 -11.36607 -11.16943 -10.94361 -10.79022 -10.70329 -10.52217 -10.17907 -9.95469 -9.65523 -9.60452 -9.22477 -8.72221 -8.68411 -8.51290 -8.34093 -8.27208 -8.04810 -6.61406 -5.73285 -3.15571 1.60421 1.63300 2.11108 2.59659 3.27617 3.41189 3.48789 3.50204 4.00806 4.05738 4.20015 4.54035 4.99211 5.04289 5.06000 5.17120 5.24325 5.29126 5.41017 5.43629 5.52026 5.53822 5.57642 5.65667 5.73321 5.80185 5.83076 5.99645 6.16414 6.21755 6.22945 6.26074 6.33708 6.46052 6.53877 6.60755 6.69544 6.73746 6.77389 6.85503 6.87050 7.00162 7.02858 7.09961 7.24991 7.47488 7.52212 7.70721 7.84722 8.35009 8.49486 9.04855 9.24524 9.89131 10.44937 11.34883 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.005592 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.504577 B = 5006.106659 C = 7167.198574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.587 5.587 10 C 0.142 3.858 11 C -0.125 4.125 12 C -0.054 4.054 13 H 0.084 0.916 14 C -0.062 4.062 15 C -0.120 4.120 16 C -0.123 4.123 17 C -0.134 4.134 18 C -0.121 4.121 19 C -0.103 4.103 20 C 0.130 3.870 21 H 0.085 0.915 22 N -0.691 5.691 23 C 0.588 3.412 24 O -0.565 6.565 25 C -0.218 4.218 26 C -0.165 4.165 27 C -0.024 4.024 28 N -0.558 5.558 29 H 0.414 0.586 30 C 0.064 3.936 31 C 0.162 3.838 32 H 0.253 0.747 33 H 0.019 0.981 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.397 0.603 43 H 0.143 0.857 44 H 0.165 0.835 45 H 0.174 0.826 46 H 0.096 0.904 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.733 -10.328 -12.240 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.310 5.310 10 C 0.016 3.984 11 C -0.164 4.164 12 C -0.073 4.073 13 H 0.102 0.898 14 C -0.062 4.062 15 C -0.138 4.138 16 C -0.141 4.141 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.121 4.121 20 C 0.023 3.977 21 H 0.103 0.897 22 N -0.340 5.340 23 C 0.376 3.624 24 O -0.446 6.446 25 C -0.229 4.229 26 C -0.190 4.190 27 C -0.152 4.152 28 N -0.152 5.152 29 H 0.250 0.750 30 C -0.072 4.072 31 C 0.035 3.965 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.233 0.767 43 H 0.161 0.839 44 H 0.183 0.817 45 H 0.191 0.809 46 H 0.114 0.886 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.884 -9.980 -12.551 17.450 hybrid contribution 0.980 1.088 -0.216 1.480 sum 7.864 -8.892 -12.766 17.432 Atomic orbital electron populations 1.70007 1.05252 1.25376 1.53622 1.24975 0.95153 0.98252 1.00786 0.86319 0.79381 0.84466 0.77163 1.20319 1.21676 1.21876 1.19110 0.92564 0.84782 1.41528 0.91760 1.44059 1.35870 1.01241 1.49849 1.20938 0.97844 0.86974 0.92662 1.22093 0.96244 0.99602 0.98456 1.20475 0.99679 0.93476 0.93679 0.89770 1.20041 0.94297 0.95204 0.96697 1.21075 0.99289 0.95216 0.98225 1.21040 0.97726 0.99440 0.95932 1.21020 0.95511 0.98762 0.99878 1.21091 0.99363 0.95455 0.98032 1.21087 0.97600 0.98379 0.95001 1.21748 0.89029 0.92488 0.94424 0.89729 1.45648 1.10018 1.56373 1.21986 1.17277 0.87400 0.77300 0.80444 1.90720 1.23776 1.58721 1.71364 1.20529 0.93290 1.10366 0.98666 1.22072 0.91863 1.05155 0.99888 1.21694 0.95377 1.05181 0.92924 1.41571 1.05920 1.46024 1.21731 0.75018 1.21778 0.87461 1.00825 0.97102 1.21262 0.88804 0.99031 0.87399 0.93706 0.96306 0.92637 0.92486 0.92600 0.86335 0.86669 0.86856 0.86702 0.86242 0.76725 0.83937 0.81741 0.80909 0.88614 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 11.20 55.49 0.62 -25.74 16 2 C 0.01 0.20 4.92 -17.43 -0.09 0.12 16 3 Si 0.90 22.04 29.59 -169.99 -5.03 17.01 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.25 -6.65 9.59 -15.06 -0.14 -6.79 16 8 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -13.92 2.93 -172.09 -0.50 -14.42 16 10 C 0.14 2.78 6.51 -3.71 -0.02 2.76 16 11 C -0.12 -2.00 4.87 -26.61 -0.13 -2.12 16 12 C -0.05 -0.88 2.22 -91.73 -0.20 -1.09 16 13 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 14 C -0.06 -0.94 4.78 -104.62 -0.50 -1.44 16 15 C -0.12 -1.67 9.67 -39.58 -0.38 -2.05 16 16 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 17 C -0.13 -1.65 10.05 -39.58 -0.40 -2.04 16 18 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 19 C -0.10 -1.48 8.20 -39.58 -0.32 -1.81 16 20 C 0.13 2.54 2.45 -67.80 -0.17 2.37 16 21 H 0.08 1.79 7.16 -51.93 -0.37 1.41 16 22 N -0.69 -12.90 3.09 -54.81 -0.17 -13.07 16 23 C 0.59 11.74 7.81 -12.59 -0.10 11.64 16 24 O -0.57 -13.12 16.36 5.25 0.09 -13.04 16 25 C -0.22 -3.63 6.29 -103.35 -0.65 -4.28 16 26 C -0.17 -2.29 10.56 -37.50 -0.40 -2.68 16 27 C -0.02 -0.26 11.89 -16.82 -0.20 -0.46 16 28 N -0.56 -5.69 5.90 -12.85 -0.08 -5.76 16 29 H 0.41 2.61 8.96 -40.82 -0.37 2.24 16 30 C 0.06 0.88 11.69 -16.84 -0.20 0.68 16 31 C 0.16 3.84 4.96 -3.55 -0.02 3.82 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 35 H 0.06 0.90 5.50 -51.93 -0.29 0.61 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.12 1.48 7.96 -52.49 -0.42 1.06 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.12 1.70 5.25 -52.48 -0.28 1.43 16 42 H 0.40 6.93 4.82 -40.82 -0.20 6.73 16 43 H 0.14 1.82 7.70 -52.48 -0.40 1.41 16 44 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 45 H 0.17 2.17 8.06 -52.49 -0.42 1.74 16 46 H 0.10 2.69 6.06 -51.93 -0.31 2.37 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -33.60 377.09 -10.49 -44.09 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.39 Total: 12.55 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -4.71 Total: -7.31 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.13 Total: -58.99 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.60 -10.49 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087428640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.369 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds