Wall clock time and date at job start Sat Apr 11 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99557 * 2 1 4 4 H 1.48500 * 109.47100 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47183 * 299.99970 * 3 2 1 6 6 H 1.48499 * 109.47164 * 59.99909 * 3 2 1 7 7 C 1.38807 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99980 * 197.45135 * 7 2 1 9 9 N 1.36937 * 120.00353 * 17.44576 * 7 2 1 10 10 C 1.46924 * 120.63583 * 207.55882 * 9 7 2 11 11 C 1.53194 * 108.89424 * 233.68360 * 10 9 7 12 12 C 1.53033 * 109.31120 * 305.29300 * 11 10 9 13 13 H 1.09003 * 109.46224 * 301.35968 * 12 11 10 14 14 C 1.50705 * 109.46048 * 181.38711 * 12 11 10 15 15 C 1.38237 * 119.99826 * 127.22036 * 14 12 11 16 16 C 1.38236 * 119.99425 * 179.78706 * 15 14 12 17 17 C 1.38229 * 120.00230 * 0.46825 * 16 15 14 18 18 C 1.38240 * 120.00205 * 359.76134 * 17 16 15 19 19 C 1.38232 * 119.99818 * 307.49281 * 14 12 11 20 20 C 1.53046 * 109.54216 * 61.36578 * 12 11 10 21 21 H 1.08992 * 109.50338 * 178.64915 * 20 12 11 22 22 N 1.46500 * 109.49339 * 58.58480 * 20 12 11 23 23 C 1.34769 * 119.99906 * 140.58889 * 22 20 12 24 24 O 1.21631 * 120.00153 * 359.97438 * 23 22 20 25 25 C 1.47271 * 120.00331 * 179.97438 * 23 22 20 26 26 C 1.46682 * 126.93783 * 359.68169 * 25 23 22 27 27 C 1.34484 * 106.33294 * 179.88774 * 26 25 23 28 28 N 1.36449 * 108.85643 * 0.37896 * 27 26 25 29 29 H 0.96997 * 124.85355 * 179.72623 * 28 27 26 30 30 C 1.34658 * 110.29557 * 359.74418 * 28 27 26 31 31 C 1.47208 * 120.80707 * 27.70550 * 9 7 2 32 32 H 0.96994 * 120.00558 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.58253 * 113.81976 * 10 9 7 34 34 H 1.08997 * 109.58300 * 353.53992 * 10 9 7 35 35 H 1.08997 * 109.49401 * 65.24355 * 11 10 9 36 36 H 1.08998 * 109.49241 * 185.31148 * 11 10 9 37 37 H 1.07993 * 119.99910 * 359.97438 * 15 14 12 38 38 H 1.07995 * 119.99780 * 180.24988 * 16 15 14 39 39 H 1.07996 * 120.00335 * 179.78987 * 17 16 15 40 40 H 1.08000 * 120.00096 * 180.02562 * 18 17 16 41 41 H 1.08003 * 119.99913 * 359.97438 * 19 14 12 42 42 H 0.97007 * 119.99888 * 320.58125 * 22 20 12 43 43 H 1.08006 * 126.83524 * 0.02562 * 26 25 23 44 44 H 1.08003 * 125.57311 * 180.15781 * 27 26 25 45 45 H 1.08001 * 125.80249 * 180.02562 * 30 28 27 46 46 H 1.08996 * 109.53488 * 6.53659 * 31 9 7 47 47 H 1.09002 * 109.55982 * 246.15116 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0531 -1.2236 0.2800 9 7 1.3730 -2.3606 -0.3566 10 6 1.8210 -3.6552 0.1744 11 6 2.0790 -4.6091 -0.9962 12 6 0.8241 -4.6911 -1.8682 13 1 -0.0147 -5.0397 -1.2656 14 6 1.0626 -5.6550 -3.0019 15 6 0.1739 -6.6894 -3.2281 16 6 0.3904 -7.5709 -4.2708 17 6 1.5005 -7.4237 -5.0811 18 6 2.3917 -6.3920 -4.8520 19 6 2.1729 -5.5079 -3.8120 20 6 0.5033 -3.3063 -2.4353 21 1 -0.3765 -3.3701 -3.0754 22 7 1.6433 -2.8225 -3.2179 23 6 1.4350 -2.1544 -4.3697 24 8 0.3006 -1.9536 -4.7597 25 6 2.5810 -1.6675 -5.1562 26 6 4.0027 -1.8177 -4.8282 27 6 4.6852 -1.2254 -5.8242 28 7 3.7966 -0.7194 -6.7277 29 1 4.0395 -0.2409 -7.5357 30 6 2.5344 -0.9789 -6.3369 31 6 0.2275 -2.3376 -1.2809 32 1 -0.4850 0.8399 0.0004 33 1 1.0492 -4.0714 0.8218 34 1 2.7405 -3.5182 0.7436 35 1 2.9123 -4.2368 -1.5920 36 1 2.3207 -5.5999 -0.6115 37 1 -0.6909 -6.8071 -2.5922 38 1 -0.3059 -8.3766 -4.4500 39 1 1.6715 -8.1143 -5.8936 40 1 3.2588 -6.2767 -5.4854 41 1 2.8692 -4.7021 -3.6328 42 1 2.5481 -2.9828 -2.9070 43 1 4.4188 -2.3084 -3.9607 44 1 5.7608 -1.1579 -5.8954 45 1 1.6376 -0.6922 -6.8662 46 1 0.0963 -1.3293 -1.6736 47 1 -0.6743 -2.6465 -0.7523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087428640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:12 Heat of formation + Delta-G solvation = 42.612902 kcal Electronic energy + Delta-G solvation = -30581.241151 eV Core-core repulsion = 26729.321214 eV Total energy + Delta-G solvation = -3851.919937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.98777 -41.16603 -39.60561 -38.53209 -35.70344 -34.27095 -32.97302 -32.10184 -31.70573 -30.61367 -30.24280 -29.82106 -27.00119 -24.68937 -24.28427 -23.63813 -22.88105 -22.03573 -21.50434 -20.52107 -20.21538 -19.61570 -18.62350 -17.65604 -17.22967 -16.76494 -16.53009 -16.05853 -15.89454 -15.72663 -15.36909 -15.12394 -14.91371 -14.66060 -14.59829 -14.37210 -14.27420 -14.13600 -13.91175 -13.82989 -13.41485 -13.10404 -13.04589 -13.00567 -12.85454 -12.63671 -12.50281 -12.18261 -12.02232 -11.85959 -11.55185 -11.32375 -11.24503 -10.82318 -10.54222 -9.96969 -9.70895 -9.60368 -9.45441 -9.22251 -8.61726 -7.83247 -5.27268 0.55852 0.61517 0.89197 1.42695 1.46065 1.54604 1.62250 2.29859 2.51699 2.68825 2.78070 2.98779 3.33325 3.66046 3.83880 3.89958 4.03567 4.13518 4.21895 4.25563 4.27807 4.37326 4.42779 4.46677 4.58557 4.60466 4.70283 4.71241 4.81375 4.93280 4.96051 5.04118 5.09306 5.15416 5.20321 5.23098 5.26866 5.29865 5.46584 5.63413 5.68248 5.70304 5.71457 5.77142 5.81965 5.89748 6.01626 6.22985 6.41606 6.72224 6.87792 7.16435 7.53553 7.89005 8.41254 9.22577 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.005592 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.504577 B = 5006.106659 C = 7167.198574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.955 3.045 4 H -0.258 1.258 5 H -0.304 1.304 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.598 5.598 10 C 0.138 3.862 11 C -0.109 4.109 12 C -0.043 4.043 13 H 0.083 0.917 14 C -0.080 4.080 15 C -0.132 4.132 16 C -0.126 4.126 17 C -0.132 4.132 18 C -0.128 4.128 19 C -0.113 4.113 20 C 0.143 3.857 21 H 0.062 0.938 22 N -0.681 5.681 23 C 0.578 3.422 24 O -0.612 6.612 25 C -0.263 4.263 26 C -0.191 4.191 27 C 0.001 3.999 28 N -0.535 5.535 29 H 0.436 0.564 30 C 0.066 3.934 31 C 0.174 3.826 32 H 0.244 0.756 33 H 0.017 0.983 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.116 0.884 42 H 0.403 0.597 43 H 0.147 0.853 44 H 0.209 0.791 45 H 0.178 0.822 46 H 0.048 0.952 47 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.062 -11.997 -14.012 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.231 1.231 6 H -0.221 1.221 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.321 5.321 10 C 0.013 3.987 11 C -0.148 4.148 12 C -0.062 4.062 13 H 0.102 0.898 14 C -0.080 4.080 15 C -0.150 4.150 16 C -0.144 4.144 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.132 4.132 20 C 0.036 3.964 21 H 0.080 0.920 22 N -0.330 5.330 23 C 0.369 3.631 24 O -0.497 6.497 25 C -0.273 4.273 26 C -0.215 4.215 27 C -0.127 4.127 28 N -0.131 5.131 29 H 0.276 0.724 30 C -0.072 4.072 31 C 0.047 3.953 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.144 0.856 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.134 0.866 42 H 0.241 0.759 43 H 0.165 0.835 44 H 0.226 0.774 45 H 0.196 0.804 46 H 0.066 0.934 47 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 10.289 -11.678 -14.328 21.155 hybrid contribution -0.032 1.549 0.277 1.574 sum 10.257 -10.129 -14.051 20.130 Atomic orbital electron populations 1.70177 1.06795 1.25271 1.56022 1.25687 0.95754 1.01285 1.01853 0.85378 0.79269 0.80791 0.76126 1.18224 1.23133 1.22118 1.19473 0.92927 0.85706 1.39353 0.90907 1.44213 1.35452 1.02263 1.50206 1.21127 0.97818 0.85599 0.94138 1.21938 0.96071 0.99983 0.96847 1.20298 0.99902 0.91610 0.94390 0.89843 1.19883 0.95551 0.95728 0.96857 1.21284 0.99335 0.95308 0.99062 1.21377 0.98282 0.99598 0.95148 1.21415 0.94780 0.98639 1.00138 1.21373 1.00280 0.95216 0.97687 1.21147 0.97486 0.98860 0.95665 1.21351 0.89054 0.93576 0.92397 0.91999 1.45520 1.09819 1.56030 1.21621 1.17934 0.87950 0.76580 0.80681 1.90673 1.25883 1.60622 1.72527 1.20478 0.93543 1.13164 1.00131 1.22220 0.90617 1.07069 1.01561 1.22298 0.97031 1.02218 0.91135 1.41575 1.04545 1.44804 1.22197 0.72379 1.21859 0.89092 0.99936 0.96320 1.20907 0.88365 0.97436 0.88552 0.94671 0.96516 0.91859 0.91934 0.89679 0.85558 0.84129 0.84024 0.84730 0.86561 0.75915 0.83504 0.77392 0.80443 0.93391 0.97995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 11.20 21.65 0.24 -57.63 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 3 Si 0.95 46.41 29.59 68.60 2.03 48.44 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 6 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 7 C -0.24 -13.18 9.59 84.03 0.81 -12.37 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 9 N -0.60 -29.15 2.93 -698.37 -2.04 -31.19 16 10 C 0.14 5.36 6.51 86.36 0.56 5.92 16 11 C -0.11 -3.38 4.87 30.67 0.15 -3.24 16 12 C -0.04 -1.41 2.22 -11.51 -0.03 -1.44 16 13 H 0.08 2.74 7.89 -2.39 -0.02 2.72 16 14 C -0.08 -2.36 4.78 -19.86 -0.10 -2.46 16 15 C -0.13 -3.50 9.67 22.27 0.22 -3.28 16 16 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 17 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 18 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 19 C -0.11 -3.14 8.20 22.27 0.18 -2.96 16 20 C 0.14 5.92 2.45 45.07 0.11 6.04 16 21 H 0.06 2.84 7.16 -2.39 -0.02 2.82 16 22 N -0.68 -26.41 3.09 -445.57 -1.38 -27.79 16 23 C 0.58 24.16 7.81 86.62 0.68 24.84 16 24 O -0.61 -30.35 16.36 -4.13 -0.07 -30.42 16 25 C -0.26 -8.75 6.29 -19.04 -0.12 -8.87 16 26 C -0.19 -4.95 10.56 23.62 0.25 -4.70 16 27 C 0.00 0.03 11.89 83.12 0.99 1.01 16 28 N -0.54 -9.23 5.90 -194.56 -1.15 -10.38 16 29 H 0.44 3.79 8.96 -92.71 -0.83 2.96 16 30 C 0.07 1.75 11.69 83.91 0.98 2.73 16 31 C 0.17 8.85 4.96 86.31 0.43 9.28 16 32 H 0.24 14.87 8.31 -92.71 -0.77 14.09 16 33 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 35 H 0.06 1.88 5.50 -2.39 -0.01 1.87 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.13 3.04 7.96 -2.91 -0.02 3.02 16 38 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.12 3.22 5.25 -2.91 -0.02 3.20 16 42 H 0.40 14.31 4.82 -92.70 -0.45 13.86 16 43 H 0.15 3.53 7.70 -2.91 -0.02 3.51 16 44 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.18 4.43 8.06 -2.91 -0.02 4.40 16 46 H 0.05 2.90 6.06 -2.39 -0.01 2.89 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -78.23 377.09 3.56 -74.66 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -0.27 Total: 34.34 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 6.20 Total: -0.04 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -4.33 Total: -126.98 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.07 Total: -30.42 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -78.23 3.56 -74.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087428640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.277 kcal (2) G-P(sol) polarization free energy of solvation -78.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds