Wall clock time and date at job start Sat Apr 11 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48498 * 109.47783 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47139 * 300.00064 * 3 2 1 6 6 H 1.48498 * 109.47170 * 59.99417 * 3 2 1 7 7 C 1.38812 * 120.00558 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00433 * 196.17945 * 7 2 1 9 9 N 1.36939 * 119.99474 * 16.17627 * 7 2 1 10 10 C 1.47445 * 121.96678 * 210.32321 * 9 7 2 11 11 C 1.52768 * 107.14739 * 238.39188 * 10 9 7 12 12 C 1.53070 * 110.81478 * 301.13178 * 11 10 9 13 13 H 1.09005 * 112.49480 * 288.17936 * 12 11 10 14 14 C 1.55907 * 106.86154 * 163.75142 * 12 11 10 15 15 N 1.47641 * 104.41711 * 283.02278 * 14 12 11 16 16 C 1.34780 * 125.72972 * 155.02233 * 15 14 12 17 17 O 1.21614 * 120.00322 * 354.51043 * 16 15 14 18 18 C 1.47379 * 119.99521 * 174.50790 * 16 15 14 19 19 C 1.39314 * 120.34979 * 318.46127 * 18 16 15 20 20 C 1.38276 * 120.20486 * 179.80862 * 19 18 16 21 21 C 1.38056 * 120.88046 * 0.45469 * 20 19 18 22 22 C 1.38983 * 120.26958 * 359.78264 * 21 20 19 23 23 N 1.37797 * 133.37039 * 179.97438 * 22 21 20 24 24 H 0.96997 * 125.07700 * 359.97438 * 23 22 21 25 25 C 1.36555 * 109.84919 * 180.02562 * 23 22 21 26 26 C 1.34546 * 109.89664 * 359.97438 * 25 23 22 27 27 C 1.40670 * 119.51928 * 0.02562 * 22 21 20 28 28 C 1.47457 * 108.53755 * 335.02349 * 15 14 12 29 29 C 1.53332 * 106.44532 * 0.56312 * 28 15 14 30 30 H 1.08993 * 108.05127 * 268.76952 * 29 28 15 31 31 C 1.46716 * 121.33018 * 29.00962 * 9 7 2 32 32 H 0.97001 * 120.00620 * 0.02562 * 1 2 3 33 33 H 1.09004 * 111.06559 * 118.48365 * 10 9 7 34 34 H 1.08997 * 109.15985 * 357.23859 * 10 9 7 35 35 H 1.09003 * 109.21589 * 180.78493 * 11 10 9 36 36 H 1.09001 * 109.17768 * 61.45059 * 11 10 9 37 37 H 1.09004 * 110.44678 * 41.75578 * 14 12 11 38 38 H 1.08996 * 110.44658 * 164.28735 * 14 12 11 39 39 H 1.08002 * 119.89775 * 0.02562 * 19 18 16 40 40 H 1.07998 * 119.55740 * 180.23721 * 20 19 18 41 41 H 1.08003 * 119.86437 * 179.80453 * 21 20 19 42 42 H 1.07997 * 125.04757 * 179.97438 * 25 23 22 43 43 H 1.08000 * 126.49164 * 180.02562 * 26 25 23 44 44 H 1.08994 * 110.06196 * 241.31743 * 28 15 14 45 45 H 1.09005 * 110.05947 * 119.80749 * 28 15 14 46 46 H 1.09000 * 109.15769 * 7.25140 * 31 9 7 47 47 H 1.09001 * 109.16037 * 248.06966 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0582 -1.2205 0.2612 9 7 1.3662 -2.3647 -0.3294 10 6 1.7633 -3.6656 0.2398 11 6 2.1236 -4.5783 -0.9311 12 6 0.9350 -4.7379 -1.8822 13 1 0.1408 -5.3522 -1.4578 14 6 1.4982 -5.3126 -3.2175 15 7 2.1312 -4.1540 -3.8783 16 6 3.1287 -4.2119 -4.7829 17 8 3.6509 -5.2785 -5.0449 18 6 3.5864 -2.9826 -5.4547 19 6 2.6641 -2.0361 -5.8955 20 6 3.0971 -0.8819 -6.5219 21 6 4.4422 -0.6505 -6.7299 22 6 5.3863 -1.5781 -6.3060 23 7 6.7620 -1.6253 -6.3708 24 1 7.3252 -0.9414 -6.7657 25 6 7.2139 -2.7791 -5.7971 26 6 6.1738 -3.5056 -5.3491 27 6 4.9617 -2.7553 -5.6636 28 6 1.4889 -2.9228 -3.3824 29 6 0.4298 -3.3650 -2.3657 30 1 -0.5119 -3.5022 -2.8970 31 6 0.2237 -2.3692 -1.2498 32 1 -0.4851 0.8400 -0.0004 33 1 0.9490 -4.1067 0.8147 34 1 2.6342 -3.5251 0.8800 35 1 2.4100 -5.5577 -0.5476 36 1 2.9635 -4.1472 -1.4759 37 1 2.2381 -6.0874 -3.0166 38 1 0.6900 -5.7073 -3.8331 39 1 1.6078 -2.2027 -5.7443 40 1 2.3732 -0.1534 -6.8559 41 1 4.7620 0.2552 -7.2237 42 1 8.2519 -3.0658 -5.7153 43 1 6.2259 -4.4628 -4.8516 44 1 1.0160 -2.3895 -4.2070 45 1 2.2281 -2.2843 -2.8985 46 1 0.1043 -1.3733 -1.6765 47 1 -0.6790 -2.6316 -0.6981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088116239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:22 Heat of formation + Delta-G solvation = 60.111474 kcal Electronic energy + Delta-G solvation = -30349.841610 eV Core-core repulsion = 26498.680468 eV Total energy + Delta-G solvation = -3851.161142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29919 -40.01533 -38.07508 -36.61470 -35.14448 -32.68404 -31.95002 -30.76951 -30.57527 -29.40215 -28.85662 -27.25193 -25.64373 -24.29118 -22.98677 -21.81732 -21.56129 -21.34227 -20.75805 -19.49597 -18.47913 -17.67330 -17.02202 -16.57565 -15.96652 -15.57374 -15.34657 -14.87253 -14.75814 -14.40589 -14.23217 -13.92120 -13.54317 -13.46514 -13.24634 -13.07519 -12.82536 -12.71643 -12.46961 -12.09771 -11.90733 -11.80324 -11.55919 -11.52497 -11.36567 -11.00549 -10.98444 -10.71956 -10.54413 -10.45311 -10.18915 -9.93465 -9.75635 -9.50827 -9.40810 -9.37472 -8.49834 -8.26111 -8.23179 -7.70341 -6.65318 -5.80937 -3.24491 0.82694 1.58852 2.69405 2.99067 3.08436 3.32359 3.35212 3.43694 3.46267 3.98954 4.47875 4.59743 4.76633 4.89240 4.99094 5.09927 5.10348 5.27397 5.30799 5.34678 5.39165 5.49585 5.54656 5.66119 5.74679 5.85596 5.89054 5.96525 5.99271 6.07372 6.14774 6.23708 6.33241 6.40962 6.47216 6.49714 6.53358 6.60602 6.63862 6.71469 6.75712 6.78347 6.88017 7.05134 7.08041 7.27244 7.45116 7.58341 7.79650 7.86115 8.42978 8.45303 9.19499 9.81588 10.44199 11.27340 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.004685 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.606672 B = 5974.934873 C = 7496.005734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.586 5.586 10 C 0.141 3.859 11 C -0.125 4.125 12 C -0.087 4.087 13 H 0.090 0.910 14 C 0.108 3.892 15 N -0.607 5.607 16 C 0.576 3.424 17 O -0.546 6.546 18 C -0.075 4.075 19 C -0.109 4.109 20 C -0.103 4.103 21 C -0.111 4.111 22 C 0.087 3.913 23 N -0.597 5.597 24 H 0.415 0.585 25 C 0.048 3.952 26 C -0.190 4.190 27 C -0.063 4.063 28 C 0.108 3.892 29 C -0.112 4.112 30 H 0.062 0.938 31 C 0.178 3.822 32 H 0.253 0.747 33 H 0.022 0.978 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.171 0.829 43 H 0.149 0.851 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.215 -4.162 -12.841 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.082 0.918 9 N -0.309 5.309 10 C 0.015 3.985 11 C -0.165 4.165 12 C -0.106 4.106 13 H 0.108 0.892 14 C -0.015 4.015 15 N -0.340 5.340 16 C 0.366 3.634 17 O -0.425 6.425 18 C -0.078 4.078 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.132 4.132 22 C -0.019 4.019 23 N -0.201 5.201 24 H 0.251 0.749 25 C -0.078 4.078 26 C -0.215 4.215 27 C -0.068 4.068 28 C -0.013 4.013 29 C -0.133 4.133 30 H 0.081 0.919 31 C 0.051 3.949 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.139 0.861 42 H 0.188 0.812 43 H 0.167 0.833 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.574 -4.499 -13.059 15.752 hybrid contribution 0.601 1.302 -0.163 1.443 sum 8.174 -3.198 -13.221 15.870 Atomic orbital electron populations 1.70016 1.05194 1.25389 1.54019 1.25056 0.95241 0.98280 1.00732 0.86298 0.79517 0.84169 0.77304 1.20274 1.21496 1.21727 1.19134 0.92118 0.84269 1.41951 0.91800 1.44083 1.36625 1.02111 1.48089 1.20960 0.97595 0.87200 0.92778 1.21955 0.97228 0.99072 0.98211 1.22291 0.97994 0.96387 0.93924 0.89228 1.22572 0.96590 0.88864 0.93432 1.48567 1.35139 1.09309 1.40954 1.17803 0.78377 0.88474 0.78780 1.90744 1.56277 1.30751 1.64690 1.19219 0.92025 0.95095 1.01486 1.21246 0.99388 0.93192 0.99009 1.20713 0.94594 0.97373 0.99583 1.20113 0.91827 0.98245 1.03044 1.18132 0.83606 0.97316 1.02860 1.41673 1.04855 1.20183 1.53373 0.74872 1.21856 0.99322 0.86983 0.99651 1.21766 0.89773 1.01690 1.08255 1.18910 0.92141 0.94737 1.01053 1.22235 0.96474 0.86473 0.96164 1.22109 0.96637 0.96756 0.97777 0.91924 1.20099 0.89380 0.97304 0.88103 0.93682 0.96009 0.92890 0.93430 0.92037 0.90773 0.92107 0.84958 0.85087 0.86066 0.81162 0.83346 0.91894 0.89632 0.89463 0.95827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 11.27 55.49 0.63 -24.52 16 2 C 0.01 0.15 4.94 -17.43 -0.09 0.07 16 3 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.51 9.69 -15.06 -0.15 -6.65 16 8 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -13.98 2.85 -173.65 -0.50 -14.48 16 10 C 0.14 2.88 6.57 -3.64 -0.02 2.86 16 11 C -0.13 -2.21 4.99 -26.81 -0.13 -2.34 16 12 C -0.09 -1.39 3.67 -88.47 -0.32 -1.72 16 13 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.11 1.68 6.23 -1.86 -0.01 1.66 16 15 N -0.61 -10.35 2.89 -171.25 -0.49 -10.85 16 16 C 0.58 10.54 7.39 -12.54 -0.09 10.45 16 17 O -0.55 -11.19 16.79 5.26 0.09 -11.10 16 18 C -0.07 -1.25 5.47 -104.75 -0.57 -1.83 16 19 C -0.11 -1.57 8.45 -39.17 -0.33 -1.90 16 20 C -0.10 -1.28 9.99 -39.63 -0.40 -1.68 16 21 C -0.11 -1.34 10.05 -39.37 -0.40 -1.74 16 22 C 0.09 1.18 7.27 -83.99 -0.61 0.57 16 23 N -0.60 -6.23 6.06 -10.66 -0.06 -6.29 16 24 H 0.41 2.80 8.96 -40.82 -0.37 2.43 16 25 C 0.05 0.52 11.82 -16.75 -0.20 0.32 16 26 C -0.19 -2.77 10.60 -37.79 -0.40 -3.17 16 27 C -0.06 -1.01 6.11 -104.85 -0.64 -1.65 16 28 C 0.11 1.88 4.90 -3.35 -0.02 1.86 16 29 C -0.11 -1.96 2.70 -90.91 -0.25 -2.21 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 C 0.18 3.92 4.61 -4.94 -0.02 3.90 16 32 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 1.09 7.96 -51.93 -0.41 0.68 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.21 7.20 -51.93 -0.37 0.84 16 37 H 0.07 1.18 7.84 -51.93 -0.41 0.78 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.13 1.76 5.82 -52.49 -0.31 1.45 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.15 2.22 8.01 -52.49 -0.42 1.80 16 44 H 0.06 0.98 5.56 -51.93 -0.29 0.69 16 45 H 0.09 1.76 7.90 -51.93 -0.41 1.35 16 46 H 0.09 2.16 6.17 -51.93 -0.32 1.84 16 47 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -32.38 370.85 -11.09 -43.47 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.66 Total: 5.14 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -4.65 Total: -3.20 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.43 Total: -56.14 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.38 -11.09 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088116239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.581 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds