Wall clock time and date at job start Sat Apr 11 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48499 * 109.47253 * 240.00036 * 3 2 1 5 5 H 1.48501 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46993 * 119.99807 * 3 2 1 7 7 C 1.38809 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00272 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99662 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.57798 * 34.83902 * 10 9 7 12 12 C 1.53800 * 109.52252 * 155.00117 * 10 9 7 13 13 C 1.52444 * 109.41245 * 197.74043 * 12 10 9 14 14 C 1.53953 * 110.72772 * 246.26720 * 13 12 10 15 15 C 1.52872 * 109.72991 * 44.35930 * 14 13 12 16 16 C 1.53446 * 109.39571 * 72.88239 * 15 14 13 17 17 N 1.45322 * 108.42480 * 282.30218 * 16 15 14 18 18 C 1.34779 * 120.37822 * 136.67193 * 17 16 15 19 19 O 1.21279 * 120.00089 * 179.97438 * 18 17 16 20 20 C 1.50699 * 119.99728 * 359.94955 * 18 17 16 21 21 N 1.46500 * 109.46816 * 180.02562 * 20 18 17 22 22 C 1.36374 * 125.96327 * 269.69279 * 21 20 18 23 23 O 1.35630 * 125.98642 * 0.03357 * 22 21 20 24 24 N 1.30904 * 108.02634 * 179.89114 * 22 21 20 25 25 N 1.40113 * 107.93644 * 0.36727 * 24 22 21 26 26 C 1.30905 * 107.94248 * 359.76577 * 25 24 22 27 27 O 1.35632 * 125.99101 * 179.97438 * 26 25 24 28 28 C 1.46960 * 119.25614 * 316.62171 * 17 16 15 29 29 H 0.97000 * 119.99938 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99956 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.48209 * 77.75935 * 12 10 9 32 32 H 1.09001 * 109.47783 * 317.72487 * 12 10 9 33 33 H 1.09002 * 109.22570 * 125.94043 * 13 12 10 34 34 H 1.09002 * 109.19202 * 6.56565 * 13 12 10 35 35 H 1.09002 * 109.42622 * 284.27727 * 14 13 12 36 36 H 1.09001 * 109.42627 * 164.44193 * 14 13 12 37 37 H 1.09002 * 109.48738 * 192.86390 * 15 14 13 38 38 H 1.09002 * 109.48603 * 312.90291 * 15 14 13 39 39 H 1.08997 * 109.67516 * 42.01431 * 16 15 14 40 40 H 1.09000 * 109.67734 * 162.55314 * 16 15 14 41 41 H 1.09000 * 109.47286 * 299.99844 * 20 18 17 42 42 H 1.09002 * 109.46882 * 60.00203 * 20 18 17 43 43 H 0.96694 * 114.00067 * 90.00702 * 23 22 21 44 44 H 0.96703 * 113.99832 * 270.03055 * 27 26 25 45 45 H 1.08991 * 109.53741 * 351.76593 * 28 17 16 46 46 H 1.09007 * 109.53160 * 231.53394 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9702 -3.5513 0.5890 12 6 1.1768 -4.7585 0.6141 13 6 2.0513 -5.9392 1.0208 14 6 1.7307 -7.1760 0.1619 15 6 1.6065 -6.7669 -1.3059 16 6 2.9998 -6.4533 -1.8671 17 7 3.3956 -5.1342 -1.4032 18 6 4.6480 -4.9165 -0.9554 19 8 4.9711 -3.8128 -0.5703 20 6 5.6467 -6.0448 -0.9326 21 7 6.9237 -5.5560 -0.4068 22 6 7.9447 -5.0310 -1.1429 23 8 7.9553 -4.8696 -2.4895 24 7 8.9114 -4.7074 -0.3217 25 7 8.5044 -5.0409 0.9768 26 6 7.3014 -5.5518 0.9036 27 8 6.5605 -5.9992 1.9479 28 6 2.4151 -4.0397 -1.4289 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 0.4419 -5.0867 -0.1210 32 1 0.6632 -4.3670 1.4922 33 1 1.8717 -6.1743 2.0699 34 1 3.0994 -5.6714 0.8874 35 1 0.7913 -7.6161 0.4964 36 1 2.5312 -7.9082 0.2678 37 1 1.1608 -7.5832 -1.8744 38 1 0.9752 -5.8818 -1.3845 39 1 3.7141 -7.1962 -1.5124 40 1 2.9678 -6.4650 -2.9566 41 1 5.2747 -6.8466 -0.2949 42 1 5.7909 -6.4228 -1.9448 43 1 7.6114 -4.0159 -2.7860 44 1 6.6943 -6.9348 2.1528 45 1 1.5175 -4.3668 -1.9535 46 1 2.8441 -3.1781 -1.9406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088418501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:35 Heat of formation + Delta-G solvation = 11.194666 kcal Electronic energy + Delta-G solvation = -31732.506823 eV Core-core repulsion = 27468.375226 eV Total energy + Delta-G solvation = -4264.131597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45757 -40.47868 -38.34502 -37.76913 -37.24790 -35.21330 -34.39065 -34.07378 -32.16669 -29.81942 -29.70723 -29.11853 -26.95758 -26.21800 -23.86453 -22.93784 -22.93230 -22.19280 -21.02736 -20.14086 -19.40841 -19.04089 -18.44867 -17.64558 -17.08194 -16.99260 -16.41938 -16.11976 -15.74974 -15.45336 -14.81563 -14.77882 -14.52968 -13.97167 -13.77296 -13.60763 -13.28127 -13.19362 -13.06420 -12.85091 -12.58086 -12.55327 -12.32623 -11.96686 -11.67928 -11.51902 -11.16936 -11.07825 -10.89829 -10.78615 -10.69690 -10.68934 -10.55594 -10.36508 -10.18621 -9.96203 -9.63866 -9.55144 -9.49385 -9.06211 -8.44563 -6.97689 -5.76308 -3.05330 1.28049 1.59366 2.09739 2.44676 2.89900 3.09028 3.47651 3.50957 3.54465 3.58260 4.13447 4.15570 4.45198 4.54362 4.63378 4.75278 4.88459 5.03178 5.04679 5.10530 5.13744 5.23684 5.45956 5.49619 5.55005 5.60608 5.64683 5.70961 5.81393 5.88461 5.92348 5.99118 6.05162 6.25599 6.31765 6.36245 6.52492 6.56193 6.77566 6.83921 7.06371 7.11325 7.39171 7.75014 7.80236 8.08812 8.42832 9.54403 10.07896 10.43150 11.46014 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.004485 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.029514 B = 6240.976903 C = 7933.848686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.073 0.927 9 N -0.718 5.718 10 C 0.165 3.835 11 H 0.061 0.939 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.152 4.152 16 C 0.104 3.896 17 N -0.595 5.595 18 C 0.490 3.510 19 O -0.508 6.508 20 C 0.082 3.918 21 N -0.496 5.496 22 C 0.416 3.584 23 O -0.440 6.440 24 N -0.295 5.295 25 N -0.296 5.296 26 C 0.419 3.581 27 O -0.430 6.430 28 C 0.099 3.901 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.416 0.584 44 H 0.408 0.592 45 H 0.076 0.924 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 -22.541 -4.791 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.367 4.367 8 H 0.091 0.909 9 N -0.359 5.359 10 C 0.054 3.946 11 H 0.079 0.921 12 C -0.169 4.169 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.189 4.189 16 C -0.020 4.020 17 N -0.330 5.330 18 C 0.274 3.726 19 O -0.382 6.382 20 C -0.046 4.046 21 N -0.216 5.216 22 C 0.106 3.894 23 O -0.241 6.241 24 N -0.138 5.138 25 N -0.140 5.140 26 C 0.109 3.891 27 O -0.229 6.229 28 C -0.025 4.025 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.275 0.725 44 H 0.265 0.735 45 H 0.094 0.906 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.238 -21.216 -3.989 23.106 hybrid contribution -1.531 0.308 -0.717 1.719 sum 6.707 -20.908 -4.706 22.456 Atomic orbital electron populations 1.69649 1.05063 1.25751 1.57918 1.24716 0.95472 0.97640 1.02919 0.86290 0.78528 0.83500 0.78040 1.21302 1.21705 1.21193 1.19271 0.91201 0.83859 1.42359 0.90947 1.42381 1.05659 0.99707 1.88119 1.20682 0.95217 0.86090 0.92605 0.92060 1.22096 0.98379 0.95281 1.01129 1.21661 1.00481 0.94617 0.98636 1.21735 1.01256 0.97511 0.94658 1.22338 0.96861 1.03207 0.96496 1.21651 0.97218 0.84186 0.98925 1.47950 1.10847 1.11337 1.62886 1.20393 0.83017 0.89711 0.79471 1.90872 1.77777 1.24201 1.45320 1.21833 0.82235 0.97204 1.03333 1.46605 1.15068 1.52519 1.07390 1.21253 0.85451 0.97596 0.85117 1.84850 1.84984 1.43146 1.11121 1.78347 1.20685 1.20555 0.94246 1.78347 1.06670 1.18413 1.10590 1.21238 0.89840 0.99326 0.78743 1.85070 1.63049 1.32314 1.42435 1.22747 0.90114 0.87636 1.01978 0.93527 0.78277 0.91838 0.91700 0.92703 0.92247 0.92011 0.92577 0.91043 0.88945 0.90812 0.91502 0.86045 0.85679 0.72457 0.73483 0.90605 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.20 13.06 55.49 0.72 -27.48 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 23.27 29.55 -169.99 -5.02 18.24 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.69 9.91 -15.06 -0.15 -6.83 16 8 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.72 -17.75 5.12 -53.35 -0.27 -18.02 16 10 C 0.17 3.19 2.39 -67.85 -0.16 3.02 16 11 H 0.06 1.38 6.14 -51.93 -0.32 1.07 16 12 C -0.13 -2.01 4.97 -26.60 -0.13 -2.14 16 13 C -0.12 -1.39 5.41 -26.52 -0.14 -1.53 16 14 C -0.11 -0.95 5.75 -26.30 -0.15 -1.10 16 15 C -0.15 -1.20 5.45 -26.57 -0.14 -1.35 16 16 C 0.10 0.78 5.88 -4.44 -0.03 0.75 16 17 N -0.60 -7.10 1.68 -174.37 -0.29 -7.39 16 18 C 0.49 6.50 6.22 -10.98 -0.07 6.43 16 19 O -0.51 -9.70 15.18 5.56 0.08 -9.61 16 20 C 0.08 0.71 4.88 -5.19 -0.03 0.68 16 21 N -0.50 -5.84 2.25 -121.35 -0.27 -6.11 16 22 C 0.42 5.41 9.15 -88.81 -0.81 4.60 16 23 O -0.44 -4.36 13.58 -18.59 -0.25 -4.61 16 24 N -0.29 -4.68 12.72 29.65 0.38 -4.30 16 25 N -0.30 -4.72 12.72 29.65 0.38 -4.35 16 26 C 0.42 5.50 9.15 -88.81 -0.81 4.69 16 27 O -0.43 -4.38 13.58 -18.59 -0.25 -4.63 16 28 C 0.10 1.61 4.76 -4.13 -0.02 1.59 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 31 H 0.06 0.88 5.47 -51.93 -0.28 0.60 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.79 5.38 -51.93 -0.28 0.51 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.95 3.35 -51.93 -0.17 0.77 16 39 H 0.07 0.35 5.76 -51.93 -0.30 0.05 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.12 0.68 7.51 -51.93 -0.39 0.29 16 42 H 0.13 0.73 8.09 -51.93 -0.42 0.31 16 43 H 0.42 2.75 9.06 45.56 0.41 3.16 16 44 H 0.41 1.42 9.06 45.56 0.41 1.83 16 45 H 0.08 1.11 6.07 -51.93 -0.32 0.79 16 46 H 0.08 1.52 8.07 -51.93 -0.42 1.10 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -38.85 366.67 -6.48 -45.33 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.46 Total: 9.04 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -2.74 Total: 8.37 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: 0.64 Total: -67.65 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.42 Total: -18.86 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.85 -6.48 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088418501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.526 kcal (2) G-P(sol) polarization free energy of solvation -38.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds