Wall clock time and date at job start Sat Apr 11 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48499 * 109.47253 * 240.00036 * 3 2 1 5 5 H 1.48501 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46993 * 119.99807 * 3 2 1 7 7 C 1.38809 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00272 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99662 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.57798 * 34.83902 * 10 9 7 12 12 C 1.53800 * 109.52252 * 155.00117 * 10 9 7 13 13 C 1.52444 * 109.41245 * 197.74043 * 12 10 9 14 14 C 1.53953 * 110.72772 * 246.26720 * 13 12 10 15 15 C 1.52872 * 109.72991 * 44.35930 * 14 13 12 16 16 C 1.53446 * 109.39571 * 72.88239 * 15 14 13 17 17 N 1.45322 * 108.42480 * 282.30218 * 16 15 14 18 18 C 1.34779 * 120.37822 * 136.67193 * 17 16 15 19 19 O 1.21279 * 120.00089 * 179.97438 * 18 17 16 20 20 C 1.50699 * 119.99728 * 359.94955 * 18 17 16 21 21 N 1.46500 * 109.46816 * 180.02562 * 20 18 17 22 22 C 1.36374 * 125.96327 * 269.69279 * 21 20 18 23 23 O 1.35630 * 125.98642 * 0.03357 * 22 21 20 24 24 N 1.30904 * 108.02634 * 179.89114 * 22 21 20 25 25 N 1.40113 * 107.93644 * 0.36727 * 24 22 21 26 26 C 1.30905 * 107.94248 * 359.76577 * 25 24 22 27 27 O 1.35632 * 125.99101 * 179.97438 * 26 25 24 28 28 C 1.46960 * 119.25614 * 316.62171 * 17 16 15 29 29 H 0.97000 * 119.99938 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99956 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.48209 * 77.75935 * 12 10 9 32 32 H 1.09001 * 109.47783 * 317.72487 * 12 10 9 33 33 H 1.09002 * 109.22570 * 125.94043 * 13 12 10 34 34 H 1.09002 * 109.19202 * 6.56565 * 13 12 10 35 35 H 1.09002 * 109.42622 * 284.27727 * 14 13 12 36 36 H 1.09001 * 109.42627 * 164.44193 * 14 13 12 37 37 H 1.09002 * 109.48738 * 192.86390 * 15 14 13 38 38 H 1.09002 * 109.48603 * 312.90291 * 15 14 13 39 39 H 1.08997 * 109.67516 * 42.01431 * 16 15 14 40 40 H 1.09000 * 109.67734 * 162.55314 * 16 15 14 41 41 H 1.09000 * 109.47286 * 299.99844 * 20 18 17 42 42 H 1.09002 * 109.46882 * 60.00203 * 20 18 17 43 43 H 0.96694 * 114.00067 * 90.00702 * 23 22 21 44 44 H 0.96703 * 113.99832 * 270.03055 * 27 26 25 45 45 H 1.08991 * 109.53741 * 351.76593 * 28 17 16 46 46 H 1.09007 * 109.53160 * 231.53394 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9702 -3.5513 0.5890 12 6 1.1768 -4.7585 0.6141 13 6 2.0513 -5.9392 1.0208 14 6 1.7307 -7.1760 0.1619 15 6 1.6065 -6.7669 -1.3059 16 6 2.9998 -6.4533 -1.8671 17 7 3.3956 -5.1342 -1.4032 18 6 4.6480 -4.9165 -0.9554 19 8 4.9711 -3.8128 -0.5703 20 6 5.6467 -6.0448 -0.9326 21 7 6.9237 -5.5560 -0.4068 22 6 7.9447 -5.0310 -1.1429 23 8 7.9553 -4.8696 -2.4895 24 7 8.9114 -4.7074 -0.3217 25 7 8.5044 -5.0409 0.9768 26 6 7.3014 -5.5518 0.9036 27 8 6.5605 -5.9992 1.9479 28 6 2.4151 -4.0397 -1.4289 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 0.4419 -5.0867 -0.1210 32 1 0.6632 -4.3670 1.4922 33 1 1.8717 -6.1743 2.0699 34 1 3.0994 -5.6714 0.8874 35 1 0.7913 -7.6161 0.4964 36 1 2.5312 -7.9082 0.2678 37 1 1.1608 -7.5832 -1.8744 38 1 0.9752 -5.8818 -1.3845 39 1 3.7141 -7.1962 -1.5124 40 1 2.9678 -6.4650 -2.9566 41 1 5.2747 -6.8466 -0.2949 42 1 5.7909 -6.4228 -1.9448 43 1 7.6114 -4.0159 -2.7860 44 1 6.6943 -6.9348 2.1528 45 1 1.5175 -4.3668 -1.9535 46 1 2.8441 -3.1781 -1.9406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088418501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:34 Heat of formation + Delta-G solvation = -25.127790 kcal Electronic energy + Delta-G solvation = -31734.081883 eV Core-core repulsion = 27468.375226 eV Total energy + Delta-G solvation = -4265.706657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.39963 -41.53057 -39.16865 -38.89242 -38.07223 -36.73026 -35.40017 -35.14575 -33.91232 -31.31320 -30.70673 -30.22671 -28.13642 -27.18537 -25.69935 -24.00532 -23.88801 -23.12035 -22.39091 -21.08058 -20.43417 -19.87463 -19.39159 -19.11331 -18.54575 -17.93093 -17.37727 -17.29425 -16.74717 -16.44833 -16.33890 -15.78529 -15.65912 -15.42563 -15.17624 -14.75164 -14.28658 -14.21161 -14.18559 -13.91749 -13.61495 -13.44320 -13.39413 -13.14638 -13.05723 -12.83949 -12.66436 -12.51129 -12.29848 -12.08411 -11.99297 -11.75723 -11.72845 -11.61350 -11.42700 -11.40967 -11.26768 -11.03147 -10.59563 -10.55770 -9.66902 -8.97511 -8.01123 -5.28450 0.35500 0.75484 1.12204 1.38081 1.39913 1.46774 1.47914 1.93615 2.20016 2.49997 2.81420 3.29334 3.34949 3.43699 3.73926 3.94245 3.96062 4.02576 4.11572 4.13584 4.20061 4.23215 4.28611 4.45852 4.51252 4.61840 4.64762 4.75418 4.80004 4.87360 4.94918 5.06840 5.16384 5.23296 5.28403 5.33891 5.41578 5.46456 5.48896 5.58318 5.70360 6.16177 6.22995 6.38760 6.46795 6.76987 7.10328 7.29264 8.03596 8.28388 9.21357 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.004485 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.029514 B = 6240.976903 C = 7933.848686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.234 4.234 8 H 0.053 0.947 9 N -0.731 5.731 10 C 0.166 3.834 11 H 0.023 0.977 12 C -0.122 4.122 13 C -0.111 4.111 14 C -0.107 4.107 15 C -0.151 4.151 16 C 0.095 3.905 17 N -0.587 5.587 18 C 0.485 3.515 19 O -0.578 6.578 20 C 0.088 3.912 21 N -0.493 5.493 22 C 0.422 3.578 23 O -0.432 6.432 24 N -0.338 5.338 25 N -0.342 5.342 26 C 0.428 3.572 27 O -0.435 6.435 28 C 0.118 3.882 29 H 0.253 0.747 30 H 0.376 0.624 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.430 0.570 44 H 0.436 0.564 45 H 0.096 0.904 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 -26.501 -6.118 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.790 3.210 4 H -0.209 1.209 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.366 4.366 8 H 0.071 0.929 9 N -0.372 5.372 10 C 0.057 3.943 11 H 0.041 0.959 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.144 4.144 15 C -0.188 4.188 16 C -0.027 4.027 17 N -0.319 5.319 18 C 0.272 3.728 19 O -0.457 6.457 20 C -0.038 4.038 21 N -0.213 5.213 22 C 0.111 3.889 23 O -0.235 6.235 24 N -0.182 5.182 25 N -0.187 5.187 26 C 0.117 3.883 27 O -0.238 6.238 28 C -0.007 4.007 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.183 0.817 42 H 0.184 0.816 43 H 0.292 0.708 44 H 0.299 0.701 45 H 0.115 0.885 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.032 -25.285 -5.341 27.062 hybrid contribution -1.506 1.443 -0.290 2.106 sum 6.525 -23.841 -5.632 25.352 Atomic orbital electron populations 1.69760 1.06002 1.26089 1.59441 1.25353 0.96325 1.00321 1.03772 0.85419 0.77473 0.80327 0.77797 1.20877 1.20993 1.21469 1.19329 0.90487 0.85655 1.41106 0.92858 1.42501 1.05365 1.00769 1.88528 1.20803 0.93897 0.85286 0.94353 0.95876 1.22011 0.98549 0.95273 1.00142 1.21611 0.98720 0.94879 0.99725 1.21740 1.02948 0.95831 0.93881 1.22327 0.96673 1.03098 0.96736 1.22128 0.98081 0.82000 1.00445 1.47878 1.09731 1.12081 1.62254 1.21270 0.83750 0.90013 0.77794 1.90860 1.79097 1.27425 1.48349 1.22184 0.79459 0.95535 1.06611 1.46642 1.15661 1.52203 1.06754 1.21321 0.85328 0.96398 0.85859 1.84832 1.85163 1.44183 1.09348 1.78210 1.22688 1.22448 0.94850 1.78214 1.08843 1.20485 1.11117 1.21296 0.89290 0.98059 0.79688 1.85037 1.62341 1.34990 1.41472 1.22030 0.91649 0.88155 0.98899 0.93821 0.79180 0.89947 0.94442 0.92651 0.93452 0.91265 0.89173 0.87772 0.91782 0.86600 0.89272 0.81693 0.81592 0.70794 0.70064 0.88544 0.95184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.68 13.06 21.65 0.28 -59.40 16 2 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.96 49.29 29.55 68.60 2.03 51.31 16 4 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 7 C -0.23 -13.91 9.91 84.03 0.83 -13.08 16 8 H 0.05 3.33 7.83 -2.91 -0.02 3.30 16 9 N -0.73 -37.99 5.12 -322.70 -1.65 -39.64 16 10 C 0.17 6.64 2.39 45.04 0.11 6.75 16 11 H 0.02 1.11 6.14 -2.39 -0.01 1.09 16 12 C -0.12 -3.72 4.97 30.68 0.15 -3.57 16 13 C -0.11 -2.42 5.41 30.73 0.17 -2.25 16 14 C -0.11 -1.23 5.75 30.87 0.18 -1.06 16 15 C -0.15 -1.62 5.45 30.70 0.17 -1.45 16 16 C 0.09 0.89 5.88 86.75 0.51 1.40 16 17 N -0.59 -12.62 1.68 -823.98 -1.39 -14.00 16 18 C 0.48 12.02 6.22 87.66 0.55 12.57 16 19 O -0.58 -22.72 15.18 -3.03 -0.05 -22.77 16 20 C 0.09 1.15 4.88 85.63 0.42 1.56 16 21 N -0.49 -10.57 2.25 -759.26 -1.71 -12.28 16 22 C 0.42 10.55 9.15 179.72 1.65 12.20 16 23 O -0.43 -7.82 13.58 -89.43 -1.21 -9.03 16 24 N -0.34 -10.87 12.72 -173.66 -2.21 -13.08 16 25 N -0.34 -11.05 12.72 -173.66 -2.21 -13.25 16 26 C 0.43 10.76 9.15 179.72 1.65 12.41 16 27 O -0.43 -8.02 13.58 -89.45 -1.21 -9.23 16 28 C 0.12 3.86 4.76 86.07 0.41 4.27 16 29 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.38 20.34 7.80 -92.71 -0.72 19.62 16 31 H 0.08 2.20 5.47 -2.39 -0.01 2.19 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.16 5.38 -2.39 -0.01 1.14 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.52 7.87 -2.39 -0.02 0.50 16 37 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 1.09 3.35 -2.39 -0.01 1.08 16 39 H 0.12 0.19 5.76 -2.39 -0.01 0.18 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.17 0.75 7.51 -2.39 -0.02 0.73 16 42 H 0.17 0.90 8.09 -2.39 -0.02 0.88 16 43 H 0.43 5.20 9.06 -74.06 -0.67 4.53 16 44 H 0.44 1.69 9.06 -74.06 -0.67 1.02 16 45 H 0.10 2.74 6.07 -2.39 -0.01 2.73 16 46 H 0.03 1.26 8.07 -2.38 -0.02 1.24 16 Total: -1.00 -94.00 366.67 -3.07 -97.07 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.99 Total: 17.98 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 7.24 Total: 26.32 kcal Atomic # 7 Polarization: -142.78 SS G_CDS: -8.88 Total: -151.66 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -2.47 Total: -41.03 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.31 kcal Total: -94.00 -3.07 -97.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088418501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.945 kcal (2) G-P(sol) polarization free energy of solvation -94.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds