Wall clock time and date at job start Sat Apr 11 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00137 * 2 1 4 4 H 1.48497 * 109.46994 * 240.00453 * 3 2 1 5 5 H 1.48502 * 109.46766 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47288 * 119.99866 * 3 2 1 7 7 C 1.38815 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99917 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99959 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.48132 * 325.02184 * 10 9 7 12 12 C 1.52877 * 109.48137 * 204.99797 * 10 9 7 13 13 C 1.53968 * 109.71364 * 167.12207 * 12 10 9 14 14 C 1.52442 * 110.73899 * 315.64787 * 13 12 10 15 15 C 1.53795 * 109.42318 * 113.72640 * 14 13 12 16 16 C 1.52334 * 109.16560 * 282.13520 * 15 14 13 17 17 N 1.46953 * 109.09129 * 72.70175 * 16 15 14 18 18 C 1.34767 * 120.35476 * 68.37659 * 17 16 15 19 19 O 1.21285 * 120.00495 * 5.12029 * 18 17 16 20 20 C 1.50704 * 120.00105 * 185.11416 * 18 17 16 21 21 N 1.46497 * 109.47063 * 175.03409 * 20 18 17 22 22 C 1.36373 * 125.96648 * 90.00470 * 21 20 18 23 23 O 1.35629 * 125.98495 * 0.03169 * 22 21 20 24 24 N 1.30901 * 108.02844 * 180.29355 * 22 21 20 25 25 N 1.40119 * 107.93668 * 359.59492 * 24 22 21 26 26 C 1.30900 * 107.94033 * 0.40929 * 25 24 22 27 27 O 1.35626 * 125.99097 * 179.75945 * 26 25 24 28 28 C 1.45342 * 119.29140 * 248.65039 * 17 16 15 29 29 H 0.96999 * 120.00159 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99738 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.43123 * 47.05076 * 12 10 9 32 32 H 1.08995 * 109.38819 * 287.17505 * 12 10 9 33 33 H 1.09002 * 109.22359 * 195.32289 * 13 12 10 34 34 H 1.09000 * 109.18726 * 75.95031 * 13 12 10 35 35 H 1.09008 * 109.47877 * 353.74490 * 14 13 12 36 36 H 1.09004 * 109.48847 * 233.72238 * 14 13 12 37 37 H 1.09002 * 109.52546 * 162.22091 * 15 14 13 38 38 H 1.09001 * 109.56949 * 42.06928 * 15 14 13 39 39 H 1.09003 * 109.53378 * 312.81883 * 16 15 14 40 40 H 1.09004 * 109.53478 * 192.58729 * 16 15 14 41 41 H 1.08996 * 109.47014 * 55.03232 * 20 18 17 42 42 H 1.08998 * 109.47445 * 295.03532 * 20 18 17 43 43 H 0.96701 * 114.00441 * 90.00225 * 23 22 21 44 44 H 0.96703 * 113.99674 * 270.00014 * 27 26 25 45 45 H 1.08998 * 109.67860 * 162.79958 * 28 17 16 46 46 H 1.08999 * 109.68180 * 283.34605 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9690 -3.5506 -0.5886 12 6 1.1817 -4.7514 -0.6085 13 6 2.0382 -5.9951 -0.9091 14 6 3.3551 -5.5978 -1.5662 15 6 4.5197 -5.9251 -0.6166 16 6 4.5989 -4.8554 0.4650 17 7 3.4796 -5.0337 1.4003 18 6 3.4341 -6.1094 2.2109 19 8 4.3637 -6.8879 2.2382 20 6 2.2282 -6.3449 3.0836 21 7 2.3688 -7.6290 3.7745 22 6 2.9535 -7.8242 4.9910 23 8 3.5060 -6.8636 5.7729 24 7 2.8931 -9.1019 5.2692 25 7 2.2438 -9.7446 4.2068 26 6 1.9383 -8.8381 3.3133 27 8 1.3048 -9.0619 2.1351 28 6 2.4190 -4.0406 1.4375 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0005 31 1 0.7358 -4.3861 -1.5336 32 1 0.3923 -5.0161 0.0948 33 1 1.4882 -6.6564 -1.5786 34 1 2.2464 -6.5205 0.0230 35 1 3.3478 -4.5284 -1.7773 36 1 3.4785 -6.1512 -2.4971 37 1 5.4535 -5.9449 -1.1786 38 1 4.3519 -6.8982 -0.1549 39 1 4.5372 -3.8683 0.0066 40 1 5.5422 -4.9502 1.0031 41 1 1.3303 -6.3610 2.4659 42 1 2.1494 -5.5436 3.8184 43 1 2.8865 -6.4581 6.3950 44 1 1.9010 -9.2536 1.3982 45 1 1.5438 -4.4569 1.9364 46 1 2.7625 -3.1566 1.9748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088418502.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:38 Heat of formation + Delta-G solvation = 6.889346 kcal Electronic energy + Delta-G solvation = -31572.947214 eV Core-core repulsion = 27308.628924 eV Total energy + Delta-G solvation = -4264.318290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.49741 -40.54767 -38.38033 -37.91377 -37.28552 -34.93404 -34.49695 -34.19916 -32.44272 -30.41069 -29.75209 -28.61715 -26.97369 -26.22981 -24.07265 -22.96180 -22.81326 -22.10335 -21.69116 -20.06803 -19.29249 -19.05742 -18.49986 -17.59876 -17.34034 -16.95521 -16.51468 -15.98567 -15.81982 -15.50407 -15.12076 -14.46098 -14.45085 -14.17305 -13.81065 -13.68861 -13.39183 -13.25350 -13.11591 -12.89731 -12.61978 -12.61129 -12.41804 -11.93433 -11.63390 -11.59938 -11.41512 -11.01569 -10.97367 -10.86842 -10.76947 -10.73417 -10.63015 -10.49686 -10.36135 -9.97601 -9.88989 -9.70609 -9.59197 -9.12215 -8.51712 -7.20763 -5.97068 -3.28275 1.26325 1.54822 2.03942 2.34377 2.86914 3.05113 3.30487 3.35978 3.37139 3.56599 4.16569 4.21202 4.42491 4.65580 4.77452 4.89657 4.94380 5.00310 5.02734 5.19517 5.22145 5.26302 5.43574 5.47812 5.50631 5.61858 5.65820 5.72344 5.78958 5.85874 5.89335 5.99915 6.05989 6.11239 6.20911 6.34225 6.39456 6.47789 6.57812 6.75454 6.80285 7.07713 7.34988 7.49394 7.70272 7.95001 8.20419 9.32483 9.85992 10.20326 11.24544 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014409 B = 0.003383 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.764615 B = 8275.747083 C = 8906.107570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.718 5.718 10 C 0.156 3.844 11 H 0.070 0.930 12 C -0.125 4.125 13 C -0.112 4.112 14 C -0.129 4.129 15 C -0.134 4.134 16 C 0.115 3.885 17 N -0.587 5.587 18 C 0.498 3.502 19 O -0.536 6.536 20 C 0.080 3.920 21 N -0.495 5.495 22 C 0.419 3.581 23 O -0.433 6.433 24 N -0.299 5.299 25 N -0.296 5.296 26 C 0.415 3.585 27 O -0.436 6.436 28 C 0.075 3.925 29 H 0.258 0.742 30 H 0.386 0.614 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.410 0.590 44 H 0.413 0.587 45 H 0.069 0.931 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.436 -12.343 2.822 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.045 3.955 11 H 0.088 0.912 12 C -0.164 4.164 13 C -0.150 4.150 14 C -0.166 4.166 15 C -0.172 4.172 16 C -0.006 4.006 17 N -0.319 5.319 18 C 0.283 3.717 19 O -0.413 6.413 20 C -0.047 4.047 21 N -0.214 5.214 22 C 0.109 3.891 23 O -0.233 6.233 24 N -0.143 5.143 25 N -0.140 5.140 26 C 0.105 3.895 27 O -0.237 6.237 28 C -0.051 4.051 29 H 0.068 0.932 30 H 0.220 0.780 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.269 0.731 44 H 0.272 0.728 45 H 0.088 0.912 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.172 -13.950 3.564 14.990 hybrid contribution -0.124 2.652 -0.751 2.759 sum 4.048 -11.298 2.813 12.326 Atomic orbital electron populations 1.69635 1.05166 1.26135 1.56548 1.24749 0.95471 0.97786 1.02215 0.86302 0.78630 0.83463 0.77959 1.21116 1.21598 1.21153 1.19137 0.90906 0.83937 1.44213 0.91193 1.42401 1.05871 0.99447 1.88155 1.20834 0.96106 0.86673 0.91842 0.91214 1.22068 0.97915 0.94969 1.01426 1.21647 0.95900 0.97625 0.99824 1.21858 0.94193 1.02729 0.97816 1.22013 0.98910 0.99568 0.96711 1.21572 0.88724 1.00195 0.90151 1.47874 1.24365 1.22437 1.37254 1.20407 0.88180 0.82120 0.81017 1.90750 1.37314 1.46026 1.67237 1.21863 0.99849 0.84808 0.98216 1.46643 1.47399 1.09188 1.18172 1.21236 0.94139 0.89592 0.84135 1.85009 1.36230 1.51061 1.50973 1.78337 1.18222 1.00557 1.17193 1.78335 1.15553 1.19815 1.00333 1.21255 0.95359 0.81826 0.91048 1.84903 1.33020 1.90341 1.15405 1.22853 0.88377 0.90854 1.03003 0.93216 0.78047 0.91298 0.92523 0.92709 0.92951 0.90233 0.92431 0.91217 0.91222 0.88730 0.91263 0.85234 0.85616 0.73131 0.72819 0.91244 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.56 13.06 55.49 0.72 -24.84 16 2 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 20.56 29.55 -169.99 -5.02 15.53 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.25 -6.08 9.88 -15.06 -0.15 -6.23 16 8 H 0.07 1.64 7.83 -52.49 -0.41 1.23 16 9 N -0.72 -15.10 5.12 -53.46 -0.27 -15.38 16 10 C 0.16 2.42 2.29 -67.97 -0.16 2.26 16 11 H 0.07 1.12 3.29 -51.93 -0.17 0.95 16 12 C -0.13 -1.66 5.21 -26.29 -0.14 -1.79 16 13 C -0.11 -1.23 5.40 -26.51 -0.14 -1.38 16 14 C -0.13 -1.42 5.49 -26.60 -0.15 -1.57 16 15 C -0.13 -1.48 5.56 -26.66 -0.15 -1.63 16 16 C 0.12 1.40 5.18 -4.14 -0.02 1.38 16 17 N -0.59 -7.15 1.69 -174.61 -0.30 -7.44 16 18 C 0.50 6.21 6.13 -10.99 -0.07 6.14 16 19 O -0.54 -8.46 15.39 5.55 0.09 -8.37 16 20 C 0.08 0.79 4.89 -5.19 -0.03 0.76 16 21 N -0.49 -5.78 2.25 -121.35 -0.27 -6.06 16 22 C 0.42 5.31 9.15 -88.81 -0.81 4.49 16 23 O -0.43 -4.27 13.58 -18.59 -0.25 -4.52 16 24 N -0.30 -4.52 12.72 29.65 0.38 -4.14 16 25 N -0.30 -4.46 12.72 29.65 0.38 -4.09 16 26 C 0.42 5.21 9.15 -88.81 -0.81 4.39 16 27 O -0.44 -4.22 13.58 -18.58 -0.25 -4.47 16 28 C 0.07 1.00 5.50 -4.64 -0.03 0.97 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 8.82 7.80 -40.82 -0.32 8.51 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.57 5.38 -51.93 -0.28 0.29 16 35 H 0.08 1.00 5.47 -51.92 -0.28 0.72 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.86 6.37 -51.93 -0.33 0.53 16 39 H 0.09 1.18 6.07 -51.93 -0.32 0.87 16 40 H 0.07 0.87 8.04 -51.93 -0.42 0.46 16 41 H 0.13 1.09 7.46 -51.93 -0.39 0.70 16 42 H 0.13 0.99 8.12 -51.93 -0.42 0.56 16 43 H 0.41 1.54 9.06 45.56 0.41 1.95 16 44 H 0.41 2.37 9.06 45.56 0.41 2.79 16 45 H 0.07 0.80 5.66 -51.93 -0.29 0.51 16 46 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -33.54 366.74 -6.48 -40.02 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.46 Total: 10.63 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -2.74 Total: 7.59 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.64 Total: -61.94 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.42 Total: -17.36 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.54 -6.48 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088418502.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.910 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds