Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53776 * 111.85780 * 2 1 4 4 N 1.47216 * 106.37686 * 104.04684 * 3 2 1 5 5 C 1.36940 * 126.69960 * 211.28657 * 4 3 2 6 6 H 1.07999 * 120.00418 * 0.02562 * 5 4 3 7 7 C 1.38807 * 119.99613 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00475 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99860 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47413 * 120.00528 * 9 7 5 12 12 H 1.48507 * 109.47091 * 240.00627 * 9 7 5 13 13 C 1.47206 * 106.59471 * 31.27102 * 4 3 2 14 14 C 1.53705 * 106.41886 * 328.70293 * 13 4 3 15 15 H 1.09004 * 112.61266 * 256.46992 * 14 13 4 16 16 C 1.53783 * 109.38386 * 131.43081 * 14 13 4 17 17 N 1.47211 * 106.42307 * 266.11756 * 16 14 13 18 18 C 1.34773 * 126.70353 * 148.66197 * 17 16 14 19 19 O 1.21600 * 119.99888 * 353.78289 * 18 17 16 20 20 C 1.47495 * 120.00196 * 173.78512 * 18 17 16 21 21 C 1.41203 * 126.37225 * 172.42664 * 20 18 17 22 22 C 1.37997 * 106.86516 * 179.97438 * 21 20 18 23 23 C 1.41380 * 131.98439 * 180.02562 * 22 21 20 24 24 C 1.35743 * 119.33248 * 179.97438 * 23 22 21 25 25 C 1.40828 * 119.72073 * 0.02562 * 24 23 22 26 26 C 1.34542 * 120.58014 * 0.02562 * 25 24 23 27 27 N 1.37436 * 120.74228 * 359.97438 * 26 25 24 28 28 C 1.35129 * 131.27915 * 180.36657 * 27 26 25 29 29 C 1.47216 * 106.59609 * 328.69877 * 17 16 14 30 30 H 1.09006 * 109.47436 * 182.04539 * 1 2 3 31 31 H 1.08999 * 109.47282 * 302.04685 * 1 2 3 32 32 H 1.09000 * 109.47313 * 62.04820 * 1 2 3 33 33 H 1.09001 * 110.07296 * 223.27904 * 3 2 1 34 34 H 1.09000 * 110.07489 * 344.76262 * 3 2 1 35 35 H 0.96998 * 120.00237 * 179.97438 * 8 7 5 36 36 H 1.08997 * 110.07891 * 87.95859 * 13 4 3 37 37 H 1.08999 * 110.07262 * 209.44290 * 13 4 3 38 38 H 1.09006 * 110.07173 * 146.86161 * 16 14 13 39 39 H 1.09000 * 110.07678 * 25.37665 * 16 14 13 40 40 H 1.07994 * 126.56430 * 0.02651 * 21 20 18 41 41 H 1.07997 * 120.33693 * 359.97438 * 23 22 21 42 42 H 1.07998 * 120.14308 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.70801 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.62722 * 180.02562 * 26 25 24 45 45 H 1.07999 * 125.62022 * 359.95849 * 28 27 26 46 46 H 1.09002 * 110.07551 * 150.50047 * 29 17 16 47 47 H 1.09003 * 110.07613 * 271.99085 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4272 0.0000 4 7 2.5752 1.6848 1.3702 5 6 2.6002 2.8934 2.0136 6 1 2.2478 3.7811 1.5094 7 6 3.0775 2.9773 3.3144 8 7 3.5065 1.8955 3.9292 9 14 3.1109 4.6258 4.1924 10 1 2.5789 5.6782 3.2899 11 1 2.2726 4.5521 5.4159 12 1 4.5085 4.9577 4.5692 13 6 3.0154 0.3895 1.9136 14 6 2.1294 -0.6809 1.2566 15 1 1.3554 -1.0538 1.9275 16 6 3.0154 -1.8164 0.7174 17 7 3.2840 -1.4998 -0.6949 18 6 4.3949 -1.8091 -1.3926 19 8 5.3481 -2.3095 -0.8273 20 6 4.4543 -1.5406 -2.8416 21 6 5.5898 -1.6688 -3.6711 22 6 5.1956 -1.3188 -4.9464 23 6 5.8994 -1.2599 -6.1712 24 6 5.2454 -0.8733 -7.2961 25 6 3.8796 -0.5367 -7.2288 26 6 3.2172 -0.5944 -6.0591 27 7 3.8583 -0.9829 -4.9071 28 6 3.4091 -1.1210 -3.6402 29 6 2.1026 -0.7786 -1.1962 30 1 -0.3634 -1.0270 0.0367 31 1 -0.3634 0.5453 0.8710 32 1 -0.3634 0.4817 -0.9078 33 1 2.9336 1.4969 -0.7019 34 1 1.3251 2.1422 -0.2691 35 1 3.8403 1.9542 4.8380 36 1 4.0617 0.2146 1.6628 37 1 2.8826 0.3730 2.9953 38 1 2.4908 -2.7688 0.7942 39 1 3.9505 -1.8586 1.2758 40 1 6.5774 -1.9816 -3.3660 41 1 6.9469 -1.5198 -6.2114 42 1 5.7703 -0.8233 -8.2385 43 1 3.3595 -0.2288 -8.1238 44 1 2.1698 -0.3333 -6.0252 45 1 2.3992 -0.9333 -3.3069 46 1 2.3938 -0.0877 -1.9874 47 1 1.3634 -1.4864 -1.5713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092068307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = 88.261748 kcal Electronic energy + Delta-G solvation = -29710.844150 eV Core-core repulsion = 25860.903695 eV Total energy + Delta-G solvation = -3849.940455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.36975 -40.16468 -38.14625 -36.53038 -34.93188 -33.22510 -32.70064 -31.20698 -30.53685 -29.59544 -27.94527 -26.51515 -25.93322 -25.24505 -23.99267 -22.94117 -22.04049 -21.46237 -20.18798 -19.17061 -18.66444 -17.53753 -17.28887 -16.72243 -15.99469 -15.80410 -15.64891 -15.26805 -14.91069 -14.62781 -14.60466 -14.05589 -13.79736 -13.69118 -13.40404 -13.26640 -12.68170 -12.63009 -12.44950 -12.12778 -12.00976 -11.85650 -11.73244 -11.58783 -11.44550 -11.29522 -10.95621 -10.89557 -10.76760 -10.62923 -10.13912 -10.08407 -9.94720 -9.74320 -9.66259 -9.45035 -8.71885 -8.69829 -8.30205 -7.55630 -6.86230 -5.62417 -3.08136 0.55463 1.15590 2.11197 2.47988 3.26764 3.29053 3.39960 3.45066 3.47878 3.69222 4.23559 4.47605 4.51704 4.55897 4.66832 4.80311 4.84426 4.96057 5.01711 5.17966 5.25382 5.38232 5.48750 5.54326 5.59267 5.63328 5.65113 5.67676 5.76513 5.87391 5.93162 5.95183 6.04434 6.04888 6.14337 6.24529 6.34169 6.40480 6.43359 6.56467 6.63054 6.64668 6.69190 6.80472 6.94065 7.05851 7.53737 7.61197 7.85440 7.85975 8.41770 8.48805 9.21824 9.82759 10.50525 11.38201 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.002959 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.871387 B = 9460.287628 C = 9710.290799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.088 4.088 3 C 0.145 3.855 4 N -0.594 5.594 5 C -0.219 4.219 6 H 0.078 0.922 7 C -0.012 4.012 8 N -0.919 5.919 9 Si 0.915 3.085 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.291 1.291 13 C 0.142 3.858 14 C -0.113 4.113 15 H 0.087 0.913 16 C 0.116 3.884 17 N -0.605 5.605 18 C 0.602 3.398 19 O -0.540 6.540 20 C -0.157 4.157 21 C -0.134 4.134 22 C 0.020 3.980 23 C -0.071 4.071 24 C -0.139 4.139 25 C -0.137 4.137 26 C 0.041 3.959 27 N -0.340 5.340 28 C -0.020 4.020 29 C 0.104 3.896 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.015 0.985 34 H 0.042 0.958 35 H 0.252 0.748 36 H 0.011 0.989 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.161 0.839 45 H 0.187 0.813 46 H 0.081 0.919 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 -8.087 -21.518 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.347 4.347 6 H 0.096 0.904 7 C -0.207 4.207 8 N -0.568 5.568 9 Si 0.746 3.254 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.218 1.218 13 C 0.017 3.983 14 C -0.134 4.134 15 H 0.105 0.895 16 C -0.007 4.007 17 N -0.337 5.337 18 C 0.392 3.608 19 O -0.418 6.418 20 C -0.164 4.164 21 C -0.158 4.158 22 C -0.083 4.083 23 C -0.090 4.090 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.077 4.077 27 N -0.004 5.004 28 C -0.153 4.153 29 C -0.020 4.020 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.140 0.860 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.173 0.827 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.162 0.838 44 H 0.179 0.821 45 H 0.204 0.796 46 H 0.099 0.901 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.650 -8.161 -21.193 23.001 hybrid contribution -0.033 0.921 0.309 0.972 sum -3.683 -7.240 -20.884 22.408 Atomic orbital electron populations 1.21619 0.93175 1.01073 1.02062 1.22212 0.95465 0.97388 0.93969 1.21411 0.95599 0.92006 0.89138 1.44497 1.73163 1.04790 1.09308 1.19118 1.35503 0.84833 0.95293 0.90394 1.24782 1.01239 0.97571 0.97118 1.69618 1.48482 1.25793 1.12879 0.85985 0.77301 0.82647 0.79478 1.20582 1.21736 1.21752 1.21974 0.92516 0.81445 1.02386 1.23103 0.98123 0.96135 0.96006 0.89500 1.22107 1.00461 0.97182 0.80929 1.48212 1.16568 1.56397 1.12568 1.16977 0.80926 0.78045 0.84845 1.90769 1.34990 1.45380 1.70698 1.19621 0.94438 1.09109 0.93255 1.21112 0.99250 1.06171 0.89258 1.18821 0.83845 1.09687 0.95969 1.20664 1.00096 0.98583 0.89642 1.20910 0.94433 1.01825 0.98771 1.20709 0.95371 1.02760 0.96887 1.21681 0.98949 1.02608 0.84447 1.41360 1.09631 1.42483 1.06884 1.22874 1.00913 1.10127 0.81356 1.22508 0.87072 0.94903 0.97500 0.93061 0.91542 0.92988 0.96706 0.94001 0.93665 0.97142 0.85982 0.92324 0.89777 0.82721 0.83985 0.84963 0.83795 0.82123 0.79630 0.90116 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 8.50 37.16 0.32 -1.32 16 2 C -0.09 -1.44 1.09 -152.65 -0.17 -1.60 16 3 C 0.15 2.96 6.37 -3.25 -0.02 2.94 16 4 N -0.59 -15.12 3.39 -171.19 -0.58 -15.70 16 5 C -0.22 -6.08 10.34 -15.06 -0.16 -6.24 16 6 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 7 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 8 N -0.92 -26.84 10.08 55.49 0.56 -26.28 16 9 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C 0.14 3.47 5.70 -3.29 -0.02 3.45 16 14 C -0.11 -2.10 3.71 -88.80 -0.33 -2.43 16 15 H 0.09 1.52 7.92 -51.93 -0.41 1.11 16 16 C 0.12 2.02 6.36 -3.25 -0.02 1.99 16 17 N -0.61 -10.26 3.32 -172.81 -0.57 -10.84 16 18 C 0.60 11.11 7.86 -12.49 -0.10 11.01 16 19 O -0.54 -11.80 17.13 5.28 0.09 -11.71 16 20 C -0.16 -2.43 6.05 -105.06 -0.64 -3.07 16 21 C -0.13 -1.93 10.79 -38.54 -0.42 -2.34 16 22 C 0.02 0.25 6.70 -84.01 -0.56 -0.31 16 23 C -0.07 -0.67 10.11 -39.28 -0.40 -1.06 16 24 C -0.14 -1.05 10.07 -39.50 -0.40 -1.45 16 25 C -0.14 -0.96 9.97 -39.91 -0.40 -1.36 16 26 C 0.04 0.34 10.89 -16.35 -0.18 0.16 16 27 N -0.34 -3.90 2.92 -60.42 -0.18 -4.08 16 28 C -0.02 -0.25 9.90 -16.16 -0.16 -0.41 16 29 C 0.10 1.44 4.27 -3.24 -0.01 1.43 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.32 7.39 -51.93 -0.38 -0.06 16 34 H 0.04 0.81 7.82 -51.93 -0.41 0.41 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.01 0.29 7.40 -51.93 -0.38 -0.10 16 37 H 0.12 3.35 5.44 -51.93 -0.28 3.06 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.66 7.24 -51.93 -0.38 1.28 16 40 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.19 1.87 4.95 -52.49 -0.26 1.61 16 46 H 0.08 1.07 4.82 -51.93 -0.25 0.81 16 47 H 0.06 0.72 7.74 -51.93 -0.40 0.32 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -34.69 371.57 -10.36 -45.05 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.51 Total: 1.89 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -3.75 Total: -1.03 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.77 Total: -56.90 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.69 -10.36 -45.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092068307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.314 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds