Wall clock time and date at job start Sat Apr 11 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53776 * 111.85780 * 2 1 4 4 N 1.47216 * 106.37686 * 104.04684 * 3 2 1 5 5 C 1.36940 * 126.69960 * 211.28657 * 4 3 2 6 6 H 1.07999 * 120.00418 * 0.02562 * 5 4 3 7 7 C 1.38807 * 119.99613 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00475 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99860 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47413 * 120.00528 * 9 7 5 12 12 H 1.48507 * 109.47091 * 240.00627 * 9 7 5 13 13 C 1.47206 * 106.59471 * 31.27102 * 4 3 2 14 14 C 1.53705 * 106.41886 * 328.70293 * 13 4 3 15 15 H 1.09004 * 112.61266 * 256.46992 * 14 13 4 16 16 C 1.53783 * 109.38386 * 131.43081 * 14 13 4 17 17 N 1.47211 * 106.42307 * 266.11756 * 16 14 13 18 18 C 1.34773 * 126.70353 * 148.66197 * 17 16 14 19 19 O 1.21600 * 119.99888 * 353.78289 * 18 17 16 20 20 C 1.47495 * 120.00196 * 173.78512 * 18 17 16 21 21 C 1.41203 * 126.37225 * 172.42664 * 20 18 17 22 22 C 1.37997 * 106.86516 * 179.97438 * 21 20 18 23 23 C 1.41380 * 131.98439 * 180.02562 * 22 21 20 24 24 C 1.35743 * 119.33248 * 179.97438 * 23 22 21 25 25 C 1.40828 * 119.72073 * 0.02562 * 24 23 22 26 26 C 1.34542 * 120.58014 * 0.02562 * 25 24 23 27 27 N 1.37436 * 120.74228 * 359.97438 * 26 25 24 28 28 C 1.35129 * 131.27915 * 180.36657 * 27 26 25 29 29 C 1.47216 * 106.59609 * 328.69877 * 17 16 14 30 30 H 1.09006 * 109.47436 * 182.04539 * 1 2 3 31 31 H 1.08999 * 109.47282 * 302.04685 * 1 2 3 32 32 H 1.09000 * 109.47313 * 62.04820 * 1 2 3 33 33 H 1.09001 * 110.07296 * 223.27904 * 3 2 1 34 34 H 1.09000 * 110.07489 * 344.76262 * 3 2 1 35 35 H 0.96998 * 120.00237 * 179.97438 * 8 7 5 36 36 H 1.08997 * 110.07891 * 87.95859 * 13 4 3 37 37 H 1.08999 * 110.07262 * 209.44290 * 13 4 3 38 38 H 1.09006 * 110.07173 * 146.86161 * 16 14 13 39 39 H 1.09000 * 110.07678 * 25.37665 * 16 14 13 40 40 H 1.07994 * 126.56430 * 0.02651 * 21 20 18 41 41 H 1.07997 * 120.33693 * 359.97438 * 23 22 21 42 42 H 1.07998 * 120.14308 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.70801 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.62722 * 180.02562 * 26 25 24 45 45 H 1.07999 * 125.62022 * 359.95849 * 28 27 26 46 46 H 1.09002 * 110.07551 * 150.50047 * 29 17 16 47 47 H 1.09003 * 110.07613 * 271.99085 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4272 0.0000 4 7 2.5752 1.6848 1.3702 5 6 2.6002 2.8934 2.0136 6 1 2.2478 3.7811 1.5094 7 6 3.0775 2.9773 3.3144 8 7 3.5065 1.8955 3.9292 9 14 3.1109 4.6258 4.1924 10 1 2.5789 5.6782 3.2899 11 1 2.2726 4.5521 5.4159 12 1 4.5085 4.9577 4.5692 13 6 3.0154 0.3895 1.9136 14 6 2.1294 -0.6809 1.2566 15 1 1.3554 -1.0538 1.9275 16 6 3.0154 -1.8164 0.7174 17 7 3.2840 -1.4998 -0.6949 18 6 4.3949 -1.8091 -1.3926 19 8 5.3481 -2.3095 -0.8273 20 6 4.4543 -1.5406 -2.8416 21 6 5.5898 -1.6688 -3.6711 22 6 5.1956 -1.3188 -4.9464 23 6 5.8994 -1.2599 -6.1712 24 6 5.2454 -0.8733 -7.2961 25 6 3.8796 -0.5367 -7.2288 26 6 3.2172 -0.5944 -6.0591 27 7 3.8583 -0.9829 -4.9071 28 6 3.4091 -1.1210 -3.6402 29 6 2.1026 -0.7786 -1.1962 30 1 -0.3634 -1.0270 0.0367 31 1 -0.3634 0.5453 0.8710 32 1 -0.3634 0.4817 -0.9078 33 1 2.9336 1.4969 -0.7019 34 1 1.3251 2.1422 -0.2691 35 1 3.8403 1.9542 4.8380 36 1 4.0617 0.2146 1.6628 37 1 2.8826 0.3730 2.9953 38 1 2.4908 -2.7688 0.7942 39 1 3.9505 -1.8586 1.2758 40 1 6.5774 -1.9816 -3.3660 41 1 6.9469 -1.5198 -6.2114 42 1 5.7703 -0.8233 -8.2385 43 1 3.3595 -0.2288 -8.1238 44 1 2.1698 -0.3333 -6.0252 45 1 2.3992 -0.9333 -3.3069 46 1 2.3938 -0.0877 -1.9874 47 1 1.3634 -1.4864 -1.5713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092068307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:47 Heat of formation + Delta-G solvation = 67.324678 kcal Electronic energy + Delta-G solvation = -29711.752049 eV Core-core repulsion = 25860.903695 eV Total energy + Delta-G solvation = -3850.848354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.23597 -41.56041 -39.59185 -37.33395 -36.65169 -34.40260 -34.01090 -32.62085 -32.20970 -30.71689 -28.80784 -27.88248 -27.53079 -26.77794 -25.14916 -24.11818 -23.05124 -22.61934 -21.85929 -20.39392 -20.06844 -18.88525 -18.38240 -18.10515 -17.10477 -16.91079 -16.73255 -16.64566 -16.29502 -15.81326 -15.60166 -15.56516 -15.23690 -14.98842 -14.74423 -14.63133 -14.06167 -13.80986 -13.57238 -13.40850 -13.32095 -13.18484 -12.93252 -12.84310 -12.74023 -12.67440 -12.44593 -12.26000 -12.14287 -11.97265 -11.82015 -11.54668 -11.44993 -11.42782 -11.15956 -11.10098 -10.81162 -9.80246 -9.50775 -8.93556 -8.35929 -7.75411 -5.24659 -0.17828 0.36580 1.05378 1.44776 1.46632 1.56580 1.64918 2.02865 2.42500 2.48005 2.60206 3.29859 3.38298 3.48100 3.52825 3.75059 3.87344 3.91954 3.96975 4.03911 4.11608 4.23537 4.29739 4.31147 4.38734 4.42719 4.50905 4.57368 4.72193 4.78075 4.81363 4.86742 4.90900 4.91969 4.97370 5.12265 5.22071 5.23322 5.24779 5.30607 5.40065 5.44336 5.45638 5.53117 5.61837 5.62469 5.82039 5.88101 6.29758 6.34161 6.53558 7.08307 7.12044 7.76304 8.44256 9.23372 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.002959 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.871387 B = 9460.287628 C = 9710.290799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C 0.140 3.860 4 N -0.617 5.617 5 C -0.232 4.232 6 H 0.085 0.915 7 C -0.071 4.071 8 N -0.950 5.950 9 Si 0.982 3.018 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.298 1.298 13 C 0.150 3.850 14 C -0.104 4.104 15 H 0.104 0.896 16 C 0.119 3.881 17 N -0.608 5.608 18 C 0.594 3.406 19 O -0.596 6.596 20 C -0.190 4.190 21 C -0.179 4.179 22 C 0.024 3.976 23 C -0.104 4.104 24 C -0.118 4.118 25 C -0.132 4.132 26 C 0.027 3.973 27 N -0.340 5.340 28 C -0.010 4.010 29 C 0.105 3.895 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.002 0.998 34 H 0.056 0.944 35 H 0.246 0.754 36 H -0.038 1.038 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.165 0.835 43 H 0.185 0.815 44 H 0.198 0.802 45 H 0.215 0.785 46 H 0.093 0.907 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 -7.446 -25.976 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.078 4.078 3 C 0.014 3.986 4 N -0.341 5.341 5 C -0.361 4.361 6 H 0.103 0.897 7 C -0.263 4.263 8 N -0.600 5.600 9 Si 0.811 3.189 10 H -0.188 1.188 11 H -0.215 1.215 12 H -0.226 1.226 13 C 0.024 3.976 14 C -0.124 4.124 15 H 0.122 0.878 16 C -0.004 4.004 17 N -0.339 5.339 18 C 0.386 3.614 19 O -0.478 6.478 20 C -0.198 4.198 21 C -0.203 4.203 22 C -0.081 4.081 23 C -0.123 4.123 24 C -0.138 4.138 25 C -0.151 4.151 26 C -0.090 4.090 27 N -0.003 5.003 28 C -0.143 4.143 29 C -0.016 4.016 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.019 0.981 34 H 0.074 0.926 35 H 0.056 0.944 36 H -0.020 1.020 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.157 0.843 41 H 0.172 0.828 42 H 0.182 0.818 43 H 0.202 0.798 44 H 0.215 0.785 45 H 0.231 0.769 46 H 0.110 0.890 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.285 -7.504 -25.702 27.749 hybrid contribution 1.140 0.792 1.477 2.027 sum -6.145 -6.712 -24.226 25.878 Atomic orbital electron populations 1.21598 0.89853 1.03114 1.02613 1.22180 0.97782 0.94296 0.93493 1.21647 0.95472 0.95290 0.86164 1.44811 1.73334 1.04445 1.11500 1.19529 1.34823 0.86121 0.95642 0.89692 1.25669 1.01562 1.00993 0.98113 1.69915 1.49565 1.27769 1.12738 0.84945 0.76628 0.79022 0.78346 1.18753 1.21477 1.22578 1.21670 0.91352 0.83554 1.01044 1.22920 0.97574 0.94733 0.97210 0.87808 1.22024 0.98811 0.98338 0.81265 1.48312 1.17198 1.56216 1.12158 1.17548 0.80404 0.77272 0.86219 1.90716 1.36921 1.48102 1.72074 1.19448 0.96363 1.12175 0.91803 1.21105 0.99019 1.09254 0.90875 1.19040 0.84745 1.08392 0.95964 1.20927 1.01122 1.00926 0.89310 1.21443 0.94975 0.98270 0.99126 1.21310 0.95096 1.00801 0.97889 1.22492 1.00762 1.02251 0.83477 1.41579 1.09339 1.41853 1.07574 1.23006 1.00940 1.08999 0.81362 1.22749 0.86634 0.95761 0.96490 0.90058 0.93760 0.89941 0.98058 0.92563 0.94398 1.02010 0.89338 0.88808 0.93649 0.84293 0.82824 0.81790 0.79793 0.78468 0.76875 0.88951 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.56 8.50 71.98 0.61 -1.95 16 2 C -0.08 -2.30 1.09 -50.98 -0.06 -2.36 16 3 C 0.14 5.63 6.37 86.50 0.55 6.18 16 4 N -0.62 -32.45 3.39 -695.52 -2.36 -34.81 16 5 C -0.23 -13.21 10.34 84.03 0.87 -12.34 16 6 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 7 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16 8 N -0.95 -58.55 10.08 21.65 0.22 -58.34 16 9 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 13 C 0.15 7.77 5.70 86.48 0.49 8.27 16 14 C -0.10 -3.88 3.71 -9.61 -0.04 -3.92 16 15 H 0.10 3.54 7.92 -2.39 -0.02 3.52 16 16 C 0.12 4.24 6.36 86.51 0.55 4.79 16 17 N -0.61 -20.77 3.32 -818.92 -2.72 -23.48 16 18 C 0.59 23.21 7.86 86.68 0.68 23.89 16 19 O -0.60 -28.61 17.13 -4.03 -0.07 -28.68 16 20 C -0.19 -6.12 6.05 -20.15 -0.12 -6.25 16 21 C -0.18 -5.55 10.79 22.94 0.25 -5.31 16 22 C 0.02 0.58 6.70 38.90 0.26 0.84 16 23 C -0.10 -1.79 10.11 22.46 0.23 -1.56 16 24 C -0.12 -1.29 10.07 22.32 0.22 -1.07 16 25 C -0.13 -1.13 9.97 22.06 0.22 -0.91 16 26 C 0.03 0.32 10.89 82.97 0.90 1.22 16 27 N -0.34 -6.98 2.92 -345.07 -1.01 -7.99 16 28 C -0.01 -0.23 9.90 84.14 0.83 0.60 16 29 C 0.11 2.63 4.27 86.51 0.37 3.00 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.00 0.07 7.39 -2.39 -0.02 0.05 16 34 H 0.06 2.08 7.82 -2.39 -0.02 2.07 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H -0.04 -2.28 7.40 -2.39 -0.02 -2.30 16 37 H 0.09 5.22 5.44 -2.39 -0.01 5.21 16 38 H 0.09 2.71 8.14 -2.38 -0.02 2.70 16 39 H 0.04 1.96 7.24 -2.39 -0.02 1.95 16 40 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 43 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 44 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.22 3.42 4.95 -2.91 -0.01 3.40 16 46 H 0.09 2.14 4.82 -2.39 -0.01 2.13 16 47 H 0.11 1.86 7.74 -2.39 -0.02 1.84 16 Total: -1.00 -85.78 371.57 4.37 -81.41 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.98 Total: 13.79 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 7.29 Total: 9.46 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -5.86 Total: -124.62 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.07 Total: -28.68 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -85.78 4.37 -81.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092068307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.732 kcal (2) G-P(sol) polarization free energy of solvation -85.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds