Wall clock time and date at job start Sat Apr 11 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00161 * 2 1 4 4 H 1.48503 * 109.47020 * 270.00221 * 3 2 1 5 5 H 1.48505 * 109.47258 * 30.00166 * 3 2 1 6 6 H 1.48501 * 109.47423 * 150.00254 * 3 2 1 7 7 C 1.38817 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99610 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00232 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00099 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.32285 * 35.35006 * 10 9 7 12 12 C 1.53027 * 109.32393 * 155.00079 * 10 9 7 13 13 C 1.53973 * 108.82789 * 175.67563 * 12 10 9 14 14 H 1.08997 * 112.99344 * 169.00628 * 13 12 10 15 15 C 1.55428 * 106.41396 * 293.82368 * 13 12 10 16 16 C 1.55167 * 100.35298 * 73.37250 * 15 13 12 17 17 H 1.09003 * 112.48441 * 162.66355 * 16 15 13 18 18 C 1.52994 * 109.32211 * 275.88565 * 10 9 7 19 19 N 1.47788 * 104.25465 * 40.54858 * 16 15 13 20 20 C 1.34777 * 125.85500 * 153.53638 * 19 16 15 21 21 O 1.21783 * 120.00075 * 0.02562 * 20 19 16 22 22 C 1.46207 * 120.00173 * 180.27705 * 20 19 16 23 23 C 1.41740 * 126.79779 * 359.74696 * 22 20 19 24 24 C 1.34518 * 107.77822 * 179.97438 * 23 22 20 25 25 N 1.36955 * 109.60275 * 359.97438 * 24 23 22 26 26 C 1.36707 * 131.34756 * 180.02562 * 25 24 23 27 27 C 1.35004 * 120.74933 * 180.02562 * 26 25 24 28 28 C 1.40297 * 120.38300 * 359.97438 * 27 26 25 29 29 C 1.36343 * 119.46219 * 359.97438 * 28 27 26 30 30 C 1.36946 * 108.74050 * 359.76455 * 25 24 23 31 31 C 1.47077 * 108.29018 * 333.80269 * 19 16 15 32 32 H 0.97007 * 119.99908 * 359.97438 * 1 2 3 33 33 H 0.96999 * 120.00160 * 0.02562 * 9 7 2 34 34 H 1.08998 * 109.58252 * 55.87175 * 12 10 9 35 35 H 1.09001 * 109.68676 * 295.53923 * 12 10 9 36 36 H 1.08997 * 111.23685 * 315.59585 * 15 13 12 37 37 H 1.09003 * 111.23291 * 191.15264 * 15 13 12 38 38 H 1.08999 * 109.53061 * 64.75664 * 18 10 9 39 39 H 1.08993 * 109.53259 * 304.52987 * 18 10 9 40 40 H 1.08004 * 126.10904 * 359.97438 * 23 22 20 41 41 H 1.08000 * 125.19961 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.62247 * 359.97438 * 26 25 24 43 43 H 1.08004 * 119.80559 * 179.97438 * 27 26 25 44 44 H 1.08002 * 120.26900 * 179.97438 * 28 27 26 45 45 H 1.07992 * 120.34076 * 180.02562 * 29 28 27 46 46 H 1.08997 * 109.97650 * 120.19567 * 31 19 16 47 47 H 1.08999 * 109.97887 * 241.47256 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 1 2.9643 -3.5500 0.5942 12 6 1.1772 -4.7500 0.6075 13 6 1.9143 -6.0978 0.5028 14 1 1.4386 -6.8893 1.0819 15 6 2.0170 -6.4257 -1.0130 16 6 3.1057 -5.4081 -1.4453 17 1 3.5526 -5.6592 -2.4072 18 6 2.4404 -4.0206 -1.4376 19 7 4.0885 -5.4360 -0.3419 20 6 5.3995 -5.1406 -0.4447 21 8 5.8678 -4.8152 -1.5208 22 6 6.2606 -5.2163 0.7344 23 6 5.8708 -5.5765 2.0487 24 6 6.9637 -5.5207 2.8311 25 7 8.0457 -5.1407 2.0825 26 6 9.3557 -4.9468 2.4221 27 6 10.2597 -4.5644 1.4953 28 6 9.8678 -4.3597 0.1638 29 6 8.5646 -4.5507 -0.1885 30 6 7.6409 -4.9527 0.7878 31 6 3.3919 -5.8475 0.8864 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0023 34 1 0.2349 -4.8058 0.0626 35 1 0.9804 -4.5218 1.6550 36 1 1.0730 -6.2343 -1.5232 37 1 2.3492 -7.4514 -1.1734 38 1 3.1382 -3.2797 -1.8277 39 1 1.5451 -4.0422 -2.0588 40 1 4.8744 -5.8474 2.3654 41 1 6.9847 -5.7426 3.8878 42 1 9.6706 -5.1005 3.4437 43 1 11.2907 -4.4152 1.7805 44 1 10.5925 -4.0534 -0.5760 45 1 8.2475 -4.3976 -1.2094 46 1 3.8372 -6.7619 1.2784 47 1 3.4517 -5.0546 1.6319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094959896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:55 Heat of formation + Delta-G solvation = 73.925187 kcal Electronic energy + Delta-G solvation = -29985.676473 eV Core-core repulsion = 26135.114338 eV Total energy + Delta-G solvation = -3850.562135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.39004 -40.62395 -37.88357 -36.69388 -34.68842 -33.15442 -32.48184 -31.13597 -30.81426 -29.80817 -28.10825 -27.72827 -25.67191 -23.93940 -23.59987 -23.39687 -21.63352 -21.00181 -20.93371 -19.39490 -18.68241 -17.72407 -17.06160 -16.47057 -16.39261 -15.88756 -15.70647 -15.42231 -14.85595 -14.61854 -14.37930 -14.24820 -13.78933 -13.51703 -13.40136 -13.00978 -12.78768 -12.65231 -12.44477 -12.16031 -12.10372 -11.97663 -11.77554 -11.61493 -11.55098 -11.49815 -10.94299 -10.83920 -10.66826 -10.44431 -10.34930 -10.11692 -9.98425 -9.59208 -9.51735 -9.47203 -8.82431 -8.79672 -8.27140 -7.44708 -6.87700 -5.70245 -2.97868 0.60286 1.09328 2.34840 2.48609 3.21114 3.33781 3.48534 3.53828 3.55702 3.85166 4.28089 4.59684 4.62350 4.63056 4.65051 4.69520 4.83829 4.95367 5.03754 5.08939 5.32075 5.39554 5.43786 5.54920 5.55741 5.57284 5.63443 5.69026 5.72709 5.83589 5.88622 5.99352 6.01573 6.05213 6.10880 6.13535 6.19736 6.23925 6.35419 6.42990 6.57156 6.58656 6.69964 6.74068 6.83121 7.07706 7.11739 7.18674 7.79403 7.92129 8.49173 8.60699 9.60305 10.18221 10.53149 11.52594 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003930 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.357969 B = 7122.882400 C = 8735.453774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.232 4.232 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.049 0.951 12 C -0.121 4.121 13 C -0.100 4.100 14 H 0.097 0.903 15 C -0.128 4.128 16 C 0.137 3.863 17 H 0.091 0.909 18 C -0.142 4.142 19 N -0.601 5.601 20 C 0.608 3.392 21 O -0.557 6.557 22 C -0.229 4.229 23 C -0.115 4.115 24 C -0.068 4.068 25 N -0.339 5.339 26 C 0.045 3.955 27 C -0.143 4.143 28 C -0.123 4.123 29 C -0.076 4.076 30 C 0.109 3.891 31 C 0.102 3.898 32 H 0.254 0.746 33 H 0.382 0.618 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.156 0.844 46 H 0.065 0.935 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.289 -17.717 6.046 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.209 4.209 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.365 5.365 10 C 0.069 3.931 11 H 0.067 0.933 12 C -0.159 4.159 13 C -0.120 4.120 14 H 0.116 0.884 15 C -0.166 4.166 16 C 0.033 3.967 17 H 0.109 0.891 18 C -0.184 4.184 19 N -0.334 5.334 20 C 0.400 3.600 21 O -0.437 6.437 22 C -0.238 4.238 23 C -0.136 4.136 24 C -0.193 4.193 25 N -0.002 5.002 26 C -0.076 4.076 27 C -0.163 4.163 28 C -0.145 4.145 29 C -0.094 4.094 30 C 0.000 4.000 31 C -0.021 4.021 32 H 0.063 0.937 33 H 0.216 0.784 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.182 0.818 41 H 0.189 0.811 42 H 0.180 0.820 43 H 0.164 0.836 44 H 0.155 0.845 45 H 0.173 0.827 46 H 0.083 0.917 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.890 -17.352 5.703 24.210 hybrid contribution 0.185 1.107 0.151 1.132 sum 16.074 -16.245 5.854 23.592 Atomic orbital electron populations 1.69661 1.05019 1.25467 1.58248 1.24689 0.95463 0.97505 1.03283 0.86244 0.78691 0.84087 0.77573 1.21740 1.21814 1.20860 1.19236 0.90923 0.84179 1.41957 0.91446 1.42430 1.05657 0.99837 1.88527 1.20248 0.94229 0.85876 0.92718 0.93278 1.22119 0.99017 0.93307 1.01495 1.22652 0.94409 0.98465 0.96446 0.88449 1.23049 0.99242 0.98333 0.95940 1.22307 0.87339 0.96532 0.90484 0.89113 1.22797 0.99937 0.94424 1.01220 1.48243 1.07012 1.67535 1.10598 1.16568 0.79902 0.76456 0.87117 1.90760 1.73996 1.49754 1.29224 1.19321 0.91543 1.18066 0.94884 1.21665 0.99002 1.00924 0.91982 1.21729 0.84746 1.14715 0.98101 1.41547 1.06920 1.42734 1.09041 1.21662 0.81565 1.03306 1.01096 1.20764 0.99846 1.02482 0.93214 1.21113 0.96156 1.00929 0.96259 1.20918 0.91580 0.97022 0.99911 1.18617 0.93604 1.03876 0.83912 1.22450 0.92232 0.99292 0.88099 0.93650 0.78411 0.91674 0.91674 0.89637 0.91465 0.91905 0.91706 0.81844 0.81055 0.82044 0.83617 0.84538 0.82672 0.91699 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.90 23.34 29.55 -169.99 -5.02 18.32 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.68 9.91 -15.06 -0.15 -6.83 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.72 -18.51 5.11 -53.42 -0.27 -18.78 16 10 C 0.18 3.62 2.39 -67.92 -0.16 3.46 16 11 H 0.05 1.07 5.91 -51.93 -0.31 0.77 16 12 C -0.12 -1.90 4.96 -26.21 -0.13 -2.03 16 13 C -0.10 -1.21 4.32 -87.93 -0.38 -1.59 16 14 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.13 -1.57 6.18 -24.29 -0.15 -1.72 16 16 C 0.14 2.17 3.98 -65.62 -0.26 1.90 16 17 H 0.09 1.47 8.02 -51.93 -0.42 1.06 16 18 C -0.14 -2.75 5.28 -26.28 -0.14 -2.89 16 19 N -0.60 -9.60 2.35 -163.52 -0.38 -9.99 16 20 C 0.61 10.99 7.81 -13.06 -0.10 10.88 16 21 O -0.56 -11.62 15.92 5.11 0.08 -11.54 16 22 C -0.23 -3.61 6.16 -104.46 -0.64 -4.26 16 23 C -0.11 -1.44 9.22 -39.56 -0.36 -1.80 16 24 C -0.07 -0.74 11.53 -16.58 -0.19 -0.93 16 25 N -0.34 -4.02 2.92 -60.81 -0.18 -4.19 16 26 C 0.04 0.39 10.89 -16.53 -0.18 0.21 16 27 C -0.14 -1.15 9.97 -39.96 -0.40 -1.55 16 28 C -0.12 -1.22 10.09 -39.49 -0.40 -1.62 16 29 C -0.08 -1.01 9.72 -39.49 -0.38 -1.39 16 30 C 0.11 1.60 6.70 -83.91 -0.56 1.04 16 31 C 0.10 1.31 3.71 -2.83 -0.01 1.30 16 32 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.38 10.26 7.79 -40.82 -0.32 9.94 16 34 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.02 7.75 -51.93 -0.40 0.61 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.06 1.23 8.00 -51.93 -0.42 0.82 16 40 H 0.16 1.72 4.54 -52.48 -0.24 1.48 16 41 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.16 2.22 7.07 -52.49 -0.37 1.85 16 46 H 0.06 0.68 6.87 -51.93 -0.36 0.32 16 47 H 0.08 1.06 5.66 -51.93 -0.29 0.76 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -35.91 369.08 -10.65 -46.57 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.46 Total: 10.40 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -4.70 Total: -8.31 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.11 Total: -60.99 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.91 -10.65 -46.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094959896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.492 kcal (2) G-P(sol) polarization free energy of solvation -35.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds