Wall clock time and date at job start Sat Apr 11 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00161 * 2 1 4 4 H 1.48503 * 109.47020 * 270.00221 * 3 2 1 5 5 H 1.48505 * 109.47258 * 30.00166 * 3 2 1 6 6 H 1.48501 * 109.47423 * 150.00254 * 3 2 1 7 7 C 1.38817 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99610 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00232 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00099 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.32285 * 35.35006 * 10 9 7 12 12 C 1.53027 * 109.32393 * 155.00079 * 10 9 7 13 13 C 1.53973 * 108.82789 * 175.67563 * 12 10 9 14 14 H 1.08997 * 112.99344 * 169.00628 * 13 12 10 15 15 C 1.55428 * 106.41396 * 293.82368 * 13 12 10 16 16 C 1.55167 * 100.35298 * 73.37250 * 15 13 12 17 17 H 1.09003 * 112.48441 * 162.66355 * 16 15 13 18 18 C 1.52994 * 109.32211 * 275.88565 * 10 9 7 19 19 N 1.47788 * 104.25465 * 40.54858 * 16 15 13 20 20 C 1.34777 * 125.85500 * 153.53638 * 19 16 15 21 21 O 1.21783 * 120.00075 * 0.02562 * 20 19 16 22 22 C 1.46207 * 120.00173 * 180.27705 * 20 19 16 23 23 C 1.41740 * 126.79779 * 359.74696 * 22 20 19 24 24 C 1.34518 * 107.77822 * 179.97438 * 23 22 20 25 25 N 1.36955 * 109.60275 * 359.97438 * 24 23 22 26 26 C 1.36707 * 131.34756 * 180.02562 * 25 24 23 27 27 C 1.35004 * 120.74933 * 180.02562 * 26 25 24 28 28 C 1.40297 * 120.38300 * 359.97438 * 27 26 25 29 29 C 1.36343 * 119.46219 * 359.97438 * 28 27 26 30 30 C 1.36946 * 108.74050 * 359.76455 * 25 24 23 31 31 C 1.47077 * 108.29018 * 333.80269 * 19 16 15 32 32 H 0.97007 * 119.99908 * 359.97438 * 1 2 3 33 33 H 0.96999 * 120.00160 * 0.02562 * 9 7 2 34 34 H 1.08998 * 109.58252 * 55.87175 * 12 10 9 35 35 H 1.09001 * 109.68676 * 295.53923 * 12 10 9 36 36 H 1.08997 * 111.23685 * 315.59585 * 15 13 12 37 37 H 1.09003 * 111.23291 * 191.15264 * 15 13 12 38 38 H 1.08999 * 109.53061 * 64.75664 * 18 10 9 39 39 H 1.08993 * 109.53259 * 304.52987 * 18 10 9 40 40 H 1.08004 * 126.10904 * 359.97438 * 23 22 20 41 41 H 1.08000 * 125.19961 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.62247 * 359.97438 * 26 25 24 43 43 H 1.08004 * 119.80559 * 179.97438 * 27 26 25 44 44 H 1.08002 * 120.26900 * 179.97438 * 28 27 26 45 45 H 1.07992 * 120.34076 * 180.02562 * 29 28 27 46 46 H 1.08997 * 109.97650 * 120.19567 * 31 19 16 47 47 H 1.08999 * 109.97887 * 241.47256 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 1 2.9643 -3.5500 0.5942 12 6 1.1772 -4.7500 0.6075 13 6 1.9143 -6.0978 0.5028 14 1 1.4386 -6.8893 1.0819 15 6 2.0170 -6.4257 -1.0130 16 6 3.1057 -5.4081 -1.4453 17 1 3.5526 -5.6592 -2.4072 18 6 2.4404 -4.0206 -1.4376 19 7 4.0885 -5.4360 -0.3419 20 6 5.3995 -5.1406 -0.4447 21 8 5.8678 -4.8152 -1.5208 22 6 6.2606 -5.2163 0.7344 23 6 5.8708 -5.5765 2.0487 24 6 6.9637 -5.5207 2.8311 25 7 8.0457 -5.1407 2.0825 26 6 9.3557 -4.9468 2.4221 27 6 10.2597 -4.5644 1.4953 28 6 9.8678 -4.3597 0.1638 29 6 8.5646 -4.5507 -0.1885 30 6 7.6409 -4.9527 0.7878 31 6 3.3919 -5.8475 0.8864 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0023 34 1 0.2349 -4.8058 0.0626 35 1 0.9804 -4.5218 1.6550 36 1 1.0730 -6.2343 -1.5232 37 1 2.3492 -7.4514 -1.1734 38 1 3.1382 -3.2797 -1.8277 39 1 1.5451 -4.0422 -2.0588 40 1 4.8744 -5.8474 2.3654 41 1 6.9847 -5.7426 3.8878 42 1 9.6706 -5.1005 3.4437 43 1 11.2907 -4.4152 1.7805 44 1 10.5925 -4.0534 -0.5760 45 1 8.2475 -4.3976 -1.2094 46 1 3.8372 -6.7619 1.2784 47 1 3.4517 -5.0546 1.6319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094959896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:54 Heat of formation + Delta-G solvation = 51.723337 kcal Electronic energy + Delta-G solvation = -29986.639218 eV Core-core repulsion = 26135.114338 eV Total energy + Delta-G solvation = -3851.524879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.27304 -41.87628 -39.21823 -37.54386 -36.53739 -34.31953 -33.87358 -32.78134 -32.08000 -30.76972 -29.61283 -28.87591 -26.87938 -25.68630 -24.87121 -24.39540 -22.56988 -22.40888 -22.09235 -20.57130 -20.03338 -19.15200 -18.70374 -17.56581 -17.29172 -17.09698 -16.69834 -16.55967 -16.22750 -15.95171 -15.85935 -15.29693 -15.19406 -14.96483 -14.78220 -14.41127 -14.11635 -13.85269 -13.58037 -13.49424 -13.39915 -13.18359 -12.95563 -12.87159 -12.76909 -12.73706 -12.55134 -12.29461 -12.24856 -12.10704 -11.90030 -11.49077 -11.39317 -11.32957 -10.99052 -10.90353 -10.80688 -9.65677 -9.58687 -9.01739 -8.34808 -7.99557 -5.26429 -0.25297 0.23646 1.34842 1.38181 1.40427 1.48624 1.65620 2.17790 2.33630 2.50326 2.71082 3.31974 3.50685 3.54943 3.63923 3.74962 3.84151 3.94274 4.01228 4.06842 4.11591 4.24468 4.24728 4.30498 4.39752 4.43537 4.45394 4.63412 4.65495 4.72643 4.79634 4.82274 4.87344 4.91985 4.93758 5.06938 5.13402 5.19524 5.25983 5.30177 5.33482 5.35002 5.43452 5.46633 5.54692 5.58219 5.70383 5.85176 6.24744 6.31868 6.68438 7.30188 7.30868 8.07597 8.32249 9.23431 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003930 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.357969 B = 7122.882400 C = 8735.453774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.962 3.038 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.237 4.237 8 H 0.052 0.948 9 N -0.734 5.734 10 C 0.179 3.821 11 H 0.028 0.972 12 C -0.113 4.113 13 C -0.081 4.081 14 H 0.147 0.853 15 C -0.114 4.114 16 C 0.133 3.867 17 H 0.079 0.921 18 C -0.132 4.132 19 N -0.604 5.604 20 C 0.592 3.408 21 O -0.609 6.609 22 C -0.282 4.282 23 C -0.123 4.123 24 C -0.060 4.060 25 N -0.342 5.342 26 C 0.050 3.950 27 C -0.147 4.147 28 C -0.097 4.097 29 C -0.131 4.131 30 C 0.092 3.908 31 C 0.097 3.903 32 H 0.253 0.747 33 H 0.375 0.625 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.008 0.992 39 H 0.063 0.937 40 H 0.181 0.819 41 H 0.217 0.783 42 H 0.210 0.790 43 H 0.191 0.809 44 H 0.161 0.839 45 H 0.125 0.875 46 H 0.100 0.900 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.901 -19.923 9.333 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.791 3.209 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.070 0.930 9 N -0.374 5.374 10 C 0.071 3.929 11 H 0.046 0.954 12 C -0.151 4.151 13 C -0.100 4.100 14 H 0.165 0.835 15 C -0.152 4.152 16 C 0.029 3.971 17 H 0.097 0.903 18 C -0.174 4.174 19 N -0.335 5.335 20 C 0.387 3.613 21 O -0.493 6.493 22 C -0.291 4.291 23 C -0.143 4.143 24 C -0.183 4.183 25 N -0.005 5.005 26 C -0.070 4.070 27 C -0.166 4.166 28 C -0.118 4.118 29 C -0.150 4.150 30 C -0.019 4.019 31 C -0.025 4.025 32 H 0.062 0.938 33 H 0.207 0.793 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.198 0.802 41 H 0.233 0.767 42 H 0.227 0.773 43 H 0.208 0.792 44 H 0.178 0.822 45 H 0.142 0.858 46 H 0.118 0.882 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.493 -19.607 9.025 27.783 hybrid contribution -0.096 1.822 -0.868 2.021 sum 17.397 -17.785 8.157 26.182 Atomic orbital electron populations 1.69781 1.06100 1.26004 1.59473 1.25384 0.96367 1.00420 1.03795 0.85315 0.77709 0.80421 0.77417 1.21708 1.21004 1.20414 1.19382 0.90463 0.85924 1.41176 0.92965 1.42591 1.05384 1.00860 1.88590 1.20425 0.94041 0.85555 0.92926 0.95365 1.22023 0.98448 0.93645 1.01010 1.22735 0.93212 0.97254 0.96813 0.83498 1.23034 0.97846 0.98338 0.95942 1.22278 0.88590 0.95428 0.90831 0.90323 1.22616 0.98790 0.95622 1.00330 1.48351 1.06544 1.66902 1.11717 1.17174 0.80827 0.75850 0.87489 1.90701 1.75122 1.52308 1.31217 1.19350 0.92307 1.22001 0.95442 1.21896 1.00586 1.01108 0.90734 1.22389 0.83694 1.12767 0.99491 1.41854 1.08455 1.42312 1.07911 1.22624 0.80025 1.00961 1.03417 1.21319 1.01964 1.01523 0.91806 1.21557 0.94821 0.97251 0.98170 1.20815 0.93539 1.01658 0.98993 1.18786 0.93643 1.03856 0.85608 1.22677 0.92844 1.00344 0.86592 0.93839 0.79270 0.91208 0.91436 0.88711 0.88516 0.97250 0.91798 0.80233 0.76671 0.77327 0.79180 0.82178 0.85754 0.88244 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.58 13.06 21.65 0.28 -60.29 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 3 Si 0.96 49.31 29.55 68.60 2.03 51.34 16 4 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 5 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.24 -14.34 9.91 84.04 0.83 -13.50 16 8 H 0.05 3.25 7.83 -2.91 -0.02 3.23 16 9 N -0.73 -39.25 5.11 -322.91 -1.65 -40.90 16 10 C 0.18 7.54 2.39 45.00 0.11 7.65 16 11 H 0.03 1.31 5.91 -2.39 -0.01 1.30 16 12 C -0.11 -3.42 4.96 30.93 0.15 -3.26 16 13 C -0.08 -1.70 4.32 -9.05 -0.04 -1.74 16 14 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 15 C -0.11 -2.54 6.18 32.17 0.20 -2.34 16 16 C 0.13 4.39 3.98 45.78 0.18 4.58 16 17 H 0.08 2.77 8.02 -2.39 -0.02 2.75 16 18 C -0.13 -5.50 5.28 30.89 0.16 -5.34 16 19 N -0.60 -20.18 2.35 -789.43 -1.85 -22.04 16 20 C 0.59 23.41 7.81 86.31 0.67 24.09 16 21 O -0.61 -28.66 15.92 -4.61 -0.07 -28.74 16 22 C -0.28 -9.42 6.16 -19.76 -0.12 -9.54 16 23 C -0.12 -2.99 9.22 22.28 0.21 -2.78 16 24 C -0.06 -1.13 11.53 83.04 0.96 -0.18 16 25 N -0.34 -7.45 2.92 -346.29 -1.01 -8.47 16 26 C 0.05 0.67 10.89 83.19 0.91 1.58 16 27 C -0.15 -1.82 9.97 22.03 0.22 -1.60 16 28 C -0.10 -1.82 10.09 22.33 0.23 -1.60 16 29 C -0.13 -3.79 9.72 22.33 0.22 -3.57 16 30 C 0.09 2.81 6.70 39.43 0.26 3.08 16 31 C 0.10 2.36 3.71 86.85 0.32 2.68 16 32 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 33 H 0.37 20.85 7.79 -92.71 -0.72 20.12 16 34 H 0.07 2.08 7.97 -2.39 -0.02 2.06 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 2.01 7.75 -2.39 -0.02 1.99 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.06 2.59 8.00 -2.39 -0.02 2.57 16 40 H 0.18 3.47 4.54 -2.91 -0.01 3.46 16 41 H 0.22 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 44 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.12 4.21 7.07 -2.91 -0.02 4.19 16 46 H 0.10 1.78 6.87 -2.39 -0.02 1.76 16 47 H 0.07 1.79 5.66 -2.39 -0.01 1.77 16 Total: -1.00 -88.03 369.08 3.93 -84.10 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.28 Total: 30.40 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 5.94 Total: -5.41 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -4.24 Total: -131.69 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.07 Total: -28.74 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.03 Total: 51.34 kcal Total: -88.03 3.93 -84.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094959896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.821 kcal (2) G-P(sol) polarization free energy of solvation -88.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds