Wall clock time and date at job start Sat Apr 11 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99881 * 2 1 4 4 H 1.48497 * 109.47216 * 269.99773 * 3 2 1 5 5 H 1.48497 * 109.47282 * 29.99973 * 3 2 1 6 6 H 1.48508 * 109.46985 * 149.99840 * 3 2 1 7 7 C 1.38807 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00002 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00321 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00351 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.18045 * 35.44423 * 10 9 7 12 12 C 1.53031 * 109.32650 * 154.99949 * 10 9 7 13 13 C 1.53972 * 108.82220 * 175.68068 * 12 10 9 14 14 H 1.09006 * 112.99365 * 169.00552 * 13 12 10 15 15 C 1.55428 * 106.41766 * 293.81745 * 13 12 10 16 16 C 1.55171 * 100.35512 * 73.38172 * 15 13 12 17 17 H 1.08995 * 112.48542 * 162.67548 * 16 15 13 18 18 C 1.53889 * 106.64622 * 286.30311 * 16 15 13 19 19 N 1.47790 * 104.25547 * 40.55144 * 16 15 13 20 20 C 1.34771 * 125.86200 * 153.52904 * 19 16 15 21 21 O 1.21621 * 119.99737 * 355.18030 * 20 19 16 22 22 C 1.47370 * 120.00540 * 175.17556 * 20 19 16 23 23 C 1.39320 * 120.34432 * 47.35039 * 22 20 19 24 24 C 1.38277 * 120.19937 * 179.80396 * 23 22 20 25 25 C 1.38061 * 120.88256 * 0.46549 * 24 23 22 26 26 C 1.38975 * 120.27003 * 359.77230 * 25 24 23 27 27 N 1.37802 * 133.37126 * 180.02562 * 26 25 24 28 28 H 0.96993 * 125.07488 * 359.97438 * 27 26 25 29 29 C 1.36547 * 109.84903 * 180.02562 * 27 26 25 30 30 C 1.34554 * 109.90221 * 0.02562 * 29 27 26 31 31 C 1.40666 * 119.52115 * 0.02562 * 26 25 24 32 32 C 1.47092 * 108.28507 * 333.53285 * 19 16 15 33 33 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 34 34 H 0.96996 * 120.00148 * 0.02562 * 9 7 2 35 35 H 1.08999 * 109.57684 * 55.88123 * 12 10 9 36 36 H 1.08999 * 109.57958 * 295.48181 * 12 10 9 37 37 H 1.09004 * 111.23864 * 191.15800 * 15 13 12 38 38 H 1.08998 * 111.23357 * 315.60426 * 15 13 12 39 39 H 1.09001 * 109.52946 * 185.42677 * 18 16 15 40 40 H 1.08995 * 109.53038 * 305.57631 * 18 16 15 41 41 H 1.07994 * 119.89929 * 0.02979 * 23 22 20 42 42 H 1.07997 * 119.55415 * 180.23893 * 24 23 22 43 43 H 1.07995 * 119.86146 * 179.75785 * 25 24 23 44 44 H 1.07998 * 125.04756 * 180.02562 * 29 27 26 45 45 H 1.07995 * 126.49250 * 179.97438 * 30 29 27 46 46 H 1.08997 * 109.97553 * 241.74504 * 32 19 16 47 47 H 1.09006 * 109.97026 * 120.46147 * 32 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5651 -3.2002 -0.5963 12 6 5.4990 -2.2548 -0.6086 13 6 6.2975 -3.5672 -0.5040 14 1 7.2206 -3.5513 -1.0835 15 6 6.5308 -3.8198 1.0118 16 6 5.1053 -4.2537 1.4448 17 1 5.0998 -4.7659 2.4069 18 6 4.2406 -2.9808 1.4538 19 7 4.6375 -5.1191 0.3419 20 6 3.7264 -6.1068 0.4453 21 8 3.2771 -6.4079 1.5346 22 6 3.2746 -6.8219 -0.7614 23 6 4.2013 -7.2916 -1.6896 24 6 3.7742 -7.9658 -2.8189 25 6 2.4300 -8.1770 -3.0521 26 6 1.4811 -7.7162 -2.1473 27 7 0.1048 -7.7741 -2.1075 28 1 -0.4552 -8.1907 -2.7810 29 6 -0.3528 -7.1563 -0.9791 30 6 0.6839 -6.6854 -0.2622 31 6 1.9000 -7.0323 -0.9917 32 6 5.3369 -4.7174 -0.8882 33 1 -0.4851 0.8401 -0.0004 34 1 3.8646 -0.3621 0.0014 35 1 6.0187 -1.4666 -0.0639 36 1 5.3973 -1.9717 -1.6563 37 1 7.2530 -4.6203 1.1721 38 1 6.8374 -2.9064 1.5216 39 1 3.2507 -3.2155 1.8451 40 1 4.7112 -2.2250 2.0826 41 1 5.2566 -7.1319 -1.5249 42 1 4.5018 -8.3288 -3.5296 43 1 2.1145 -8.7022 -3.9415 44 1 -1.3924 -7.0599 -0.7030 45 1 0.6271 -6.1526 0.6754 46 1 4.6171 -4.3698 -1.6292 47 1 5.9041 -5.5592 -1.2857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095002915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:02 Heat of formation + Delta-G solvation = 31.484880 kcal Electronic energy + Delta-G solvation = -30308.399837 eV Core-core repulsion = 26455.997352 eV Total energy + Delta-G solvation = -3852.402485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.41147 -41.80756 -39.51052 -37.64933 -36.68231 -34.27591 -33.26041 -32.83495 -32.01097 -30.42691 -30.02522 -29.62820 -26.88155 -25.39678 -24.99659 -23.09680 -22.71854 -22.43061 -21.80486 -20.82397 -20.32278 -19.48058 -18.98956 -18.01492 -17.33208 -17.08299 -16.47318 -16.34209 -16.10854 -15.83189 -15.50754 -15.30954 -15.12813 -14.81426 -14.67818 -14.34334 -14.12595 -14.02524 -13.75332 -13.58212 -13.51545 -13.36144 -13.03179 -12.92284 -12.82604 -12.58111 -12.52399 -12.44696 -12.31730 -12.07355 -11.86686 -11.58640 -11.34725 -11.03479 -10.95514 -10.84646 -10.70670 -9.65794 -9.30689 -9.24653 -8.72102 -8.05065 -5.39255 -0.19359 0.59364 1.34003 1.40103 1.47309 1.54676 1.74858 2.06477 2.20628 2.46036 2.88923 3.24553 3.39354 3.48248 3.57026 3.73155 3.88421 3.95863 4.06285 4.14150 4.21329 4.23311 4.27981 4.36410 4.36948 4.41428 4.57321 4.60075 4.63907 4.74163 4.75526 4.87404 4.90045 4.94646 5.01973 5.06111 5.12151 5.24977 5.31640 5.37351 5.41566 5.45805 5.48287 5.52584 5.64982 5.67464 5.73139 6.08933 6.18953 6.52923 6.68897 7.05656 7.10953 7.80693 8.03321 9.17514 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.004454 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.903315 B = 6285.077980 C = 7909.324777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.068 4.068 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.247 1.247 7 C -0.230 4.230 8 H 0.033 0.967 9 N -0.749 5.749 10 C 0.179 3.821 11 H 0.026 0.974 12 C -0.119 4.119 13 C -0.078 4.078 14 H 0.153 0.847 15 C -0.111 4.111 16 C 0.127 3.873 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.602 5.602 20 C 0.568 3.432 21 O -0.590 6.590 22 C -0.115 4.115 23 C -0.104 4.104 24 C -0.103 4.103 25 C -0.100 4.100 26 C 0.075 3.925 27 N -0.579 5.579 28 H 0.436 0.564 29 C 0.081 3.919 30 C -0.255 4.255 31 C -0.102 4.102 32 C 0.094 3.906 33 H 0.258 0.742 34 H 0.368 0.632 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.004 0.996 40 H 0.077 0.923 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.162 0.838 44 H 0.207 0.793 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.620 -17.017 -9.736 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.259 4.259 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.172 1.172 7 C -0.361 4.361 8 H 0.051 0.949 9 N -0.393 5.393 10 C 0.072 3.928 11 H 0.045 0.955 12 C -0.157 4.157 13 C -0.097 4.097 14 H 0.170 0.830 15 C -0.149 4.149 16 C 0.023 3.977 17 H 0.097 0.903 18 C -0.177 4.177 19 N -0.334 5.334 20 C 0.359 3.641 21 O -0.472 6.472 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.032 4.032 27 N -0.184 5.184 28 H 0.277 0.723 29 C -0.047 4.047 30 C -0.280 4.280 31 C -0.107 4.107 32 C -0.028 4.028 33 H 0.066 0.934 34 H 0.202 0.798 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.023 0.977 40 H 0.095 0.905 41 H 0.171 0.829 42 H 0.193 0.807 43 H 0.179 0.821 44 H 0.224 0.776 45 H 0.127 0.873 46 H 0.074 0.926 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.003 -17.356 -9.270 24.744 hybrid contribution -1.514 1.174 0.734 2.051 sum 13.489 -16.182 -8.536 22.731 Atomic orbital electron populations 1.69930 1.07471 1.26737 1.59722 1.25620 0.96220 1.01638 1.02382 0.85257 0.78569 0.78594 0.78369 1.19817 1.22372 1.17176 1.18870 0.83045 0.92633 1.41520 0.94931 1.42760 1.02156 1.04117 1.90217 1.20747 0.92815 0.86274 0.93006 0.95547 1.22113 0.93407 0.98767 1.01377 1.22729 0.98407 0.91590 0.96978 0.82960 1.23052 0.92812 1.03319 0.95672 1.22358 0.95620 0.88872 0.90843 0.90268 1.22893 0.97609 0.97211 0.99991 1.48591 1.40431 1.32218 1.12114 1.18378 0.77649 0.79275 0.88817 1.90723 1.58104 1.67858 1.30482 1.19324 0.92927 1.03660 0.95897 1.21457 0.99354 0.98439 0.93117 1.21196 0.95308 0.98377 0.97295 1.20651 0.91491 1.01250 0.98656 1.18470 0.84840 1.02680 0.97207 1.41648 1.04463 1.50548 1.21719 0.72263 1.22257 0.99976 0.95816 0.86681 1.21748 0.92443 1.11048 1.02793 1.19294 0.92489 1.02164 0.96796 1.22604 0.95091 0.99043 0.86024 0.93362 0.79841 0.90007 0.90964 0.88174 0.88099 0.97741 0.90474 0.82853 0.80666 0.82068 0.77638 0.87294 0.92585 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.63 13.97 21.65 0.30 -66.33 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.80 27.74 68.60 1.90 48.71 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 6 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 7 C -0.23 -14.13 10.40 84.03 0.87 -13.26 16 8 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 9 N -0.75 -36.76 4.92 -320.47 -1.58 -38.34 16 10 C 0.18 7.17 2.41 45.51 0.11 7.28 16 11 H 0.03 1.23 5.89 -2.39 -0.01 1.22 16 12 C -0.12 -3.12 4.95 30.93 0.15 -2.97 16 13 C -0.08 -1.40 4.33 -9.05 -0.04 -1.44 16 14 H 0.15 1.39 8.14 -2.38 -0.02 1.37 16 15 C -0.11 -2.10 6.18 32.17 0.20 -1.90 16 16 C 0.13 3.94 3.96 45.79 0.18 4.12 16 17 H 0.08 2.65 7.99 -2.39 -0.02 2.64 16 18 C -0.14 -5.36 5.41 31.41 0.17 -5.19 16 19 N -0.60 -19.39 2.37 -788.10 -1.87 -21.25 16 20 C 0.57 22.32 7.32 86.65 0.63 22.95 16 21 O -0.59 -28.39 17.11 -4.10 -0.07 -28.46 16 22 C -0.11 -3.88 5.44 -19.95 -0.11 -3.98 16 23 C -0.10 -2.37 8.51 22.54 0.19 -2.18 16 24 C -0.10 -1.74 9.99 22.24 0.22 -1.51 16 25 C -0.10 -1.86 10.05 22.40 0.23 -1.64 16 26 C 0.08 1.99 7.27 38.97 0.28 2.28 16 27 N -0.58 -12.70 6.06 -187.63 -1.14 -13.84 16 28 H 0.44 5.56 8.96 -92.71 -0.83 4.73 16 29 C 0.08 2.19 11.82 83.11 0.98 3.17 16 30 C -0.26 -9.73 10.80 23.44 0.25 -9.48 16 31 C -0.10 -3.65 6.13 -20.01 -0.12 -3.77 16 32 C 0.09 2.16 4.46 86.85 0.39 2.54 16 33 H 0.26 16.41 8.31 -92.70 -0.77 15.64 16 34 H 0.37 16.66 5.65 -92.71 -0.52 16.14 16 35 H 0.08 1.93 7.97 -2.39 -0.02 1.91 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.10 1.70 7.73 -2.39 -0.02 1.68 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.08 2.79 8.00 -2.39 -0.02 2.77 16 41 H 0.15 2.55 5.91 -2.91 -0.02 2.53 16 42 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 44 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 45 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 46 H 0.06 1.55 6.77 -2.39 -0.02 1.54 16 47 H 0.10 1.61 5.88 -2.38 -0.01 1.59 16 Total: -1.00 -95.00 369.75 2.22 -92.79 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.40 Total: 35.42 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.06 Total: -8.70 kcal Atomic # 7 Polarization: -135.48 SS G_CDS: -4.28 Total: -139.76 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.07 Total: -28.46 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.90 Total: 48.71 kcal Total: -95.00 2.22 -92.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095002915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.270 kcal (2) G-P(sol) polarization free energy of solvation -95.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds