Wall clock time and date at job start Sat Apr 11 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48498 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47085 * 299.99701 * 3 2 1 6 6 H 1.48500 * 109.47138 * 59.99749 * 3 2 1 7 7 C 1.38807 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00147 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00395 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00181 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.32910 * 34.64284 * 10 9 7 12 12 C 1.53029 * 109.32367 * 154.11173 * 10 9 7 13 13 C 1.53975 * 108.82513 * 175.67694 * 12 10 9 14 14 H 1.09000 * 112.99359 * 169.00344 * 13 12 10 15 15 C 1.55428 * 106.41371 * 293.81653 * 13 12 10 16 16 C 1.55168 * 100.35229 * 73.38158 * 15 13 12 17 17 H 1.08997 * 113.04984 * 162.99348 * 16 15 13 18 18 C 1.52987 * 109.32450 * 274.99663 * 10 9 7 19 19 N 1.47791 * 104.25716 * 40.55162 * 16 15 13 20 20 C 1.34767 * 125.85654 * 153.51031 * 19 16 15 21 21 O 1.21594 * 120.00158 * 5.24708 * 20 19 16 22 22 C 1.47584 * 120.00086 * 185.24551 * 20 19 16 23 23 C 1.40240 * 119.83548 * 171.92476 * 22 20 19 24 24 C 1.36192 * 120.37758 * 180.27372 * 23 22 20 25 25 C 1.39911 * 119.96059 * 359.50414 * 24 23 22 26 26 C 1.46255 * 133.83945 * 180.14307 * 25 24 23 27 27 C 1.34458 * 107.03551 * 180.31730 * 26 25 24 28 28 N 1.36560 * 109.97427 * 359.97438 * 27 26 25 29 29 H 0.97003 * 125.06730 * 180.02562 * 28 27 26 30 30 C 1.37824 * 109.86234 * 359.97438 * 28 27 26 31 31 C 1.38684 * 133.37562 * 179.97438 * 30 28 27 32 32 C 1.47080 * 108.28092 * 333.77394 * 19 16 15 33 33 H 0.96992 * 119.99730 * 0.02562 * 1 2 3 34 34 H 0.97006 * 119.99365 * 359.97438 * 9 7 2 35 35 H 1.08997 * 109.57767 * 295.47648 * 12 10 9 36 36 H 1.09001 * 109.58466 * 55.87471 * 12 10 9 37 37 H 1.08999 * 111.23537 * 315.60408 * 15 13 12 38 38 H 1.09003 * 111.23639 * 191.15628 * 15 13 12 39 39 H 1.08998 * 109.53288 * 64.75666 * 18 10 9 40 40 H 1.09004 * 109.59450 * 304.57054 * 18 10 9 41 41 H 1.08003 * 119.80555 * 0.02562 * 23 22 20 42 42 H 1.08001 * 120.01514 * 179.71889 * 24 23 22 43 43 H 1.08004 * 126.48371 * 0.35607 * 26 25 24 44 44 H 1.07996 * 125.01273 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.16113 * 0.05557 * 31 30 28 46 46 H 1.09000 * 109.97351 * 120.22583 * 32 19 16 47 47 H 1.09005 * 109.97293 * 241.50516 * 32 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9709 -3.5458 0.5870 12 6 1.1857 -4.7446 0.6320 13 6 1.9216 -6.0932 0.5291 14 1 1.4539 -6.8797 1.1214 15 6 2.0038 -6.4343 -0.9851 16 6 3.0866 -5.4206 -1.4408 17 1 3.5227 -5.6682 -2.4086 18 6 2.4213 -4.0330 -1.4361 19 7 4.0843 -5.4390 -0.3506 20 6 5.3937 -5.1452 -0.4739 21 8 5.8285 -4.7388 -1.5342 22 6 6.3001 -5.3166 0.6782 23 6 7.6844 -5.1744 0.5041 24 6 8.5313 -5.3358 1.5584 25 6 8.0200 -5.6349 2.8259 26 6 8.6290 -5.8632 4.1359 27 6 7.6281 -6.1200 4.9963 28 7 6.4291 -6.0742 4.3442 29 1 5.5643 -6.2262 4.7564 30 6 6.6310 -5.7787 3.0132 31 6 5.7761 -5.6170 1.9332 32 6 3.4041 -5.8391 0.8905 33 1 -0.4849 0.8400 -0.0004 34 1 0.3555 -2.3881 0.0005 35 1 1.0051 -4.5062 1.6801 36 1 0.2362 -4.8052 0.1003 37 1 1.0529 -6.2473 -1.4841 38 1 2.3339 -7.4613 -1.1411 39 1 3.1136 -3.2955 -1.8419 40 1 1.5183 -4.0596 -2.0461 41 1 8.0813 -4.9396 -0.4725 42 1 9.5966 -5.2294 1.4168 43 1 9.6832 -5.8308 4.3684 44 1 7.7538 -6.3306 6.0480 45 1 4.7096 -5.7255 2.0643 46 1 3.8546 -6.7499 1.2850 47 1 3.4737 -5.0393 1.6278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095004743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:17 Heat of formation + Delta-G solvation = 71.435563 kcal Electronic energy + Delta-G solvation = -29920.481164 eV Core-core repulsion = 26069.811071 eV Total energy + Delta-G solvation = -3850.670093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54418 -40.81844 -38.44355 -36.49260 -34.86439 -33.07453 -32.05129 -31.24092 -30.64301 -29.60584 -28.81569 -27.86568 -26.08626 -23.68548 -23.53907 -22.86514 -21.23602 -21.12208 -20.92166 -19.81966 -18.79761 -17.78034 -17.45938 -17.10140 -16.16234 -15.93187 -15.23042 -14.93085 -14.64337 -14.42589 -14.37607 -14.17079 -13.72045 -13.65925 -13.28543 -13.19170 -12.99741 -12.89927 -12.69470 -12.30742 -12.21422 -11.86820 -11.78140 -11.66993 -11.58775 -11.35389 -10.99539 -10.86384 -10.59518 -10.35993 -10.11218 -10.07025 -9.90860 -9.69239 -9.63125 -9.55155 -8.88475 -8.51232 -8.28769 -7.91003 -6.93841 -5.75135 -3.03425 0.71296 1.43042 2.41846 2.88735 3.08958 3.11643 3.45293 3.52123 3.54805 3.94023 4.39919 4.45526 4.55443 4.61482 4.63546 4.85782 4.92148 5.04325 5.16905 5.20617 5.24857 5.34340 5.40654 5.42094 5.45643 5.55175 5.57483 5.73228 5.77159 5.77423 5.81659 5.87637 5.94970 5.99209 6.10241 6.22168 6.26167 6.30600 6.42910 6.48299 6.49514 6.55196 6.58750 6.69961 6.97202 7.00731 7.09912 7.29000 7.69282 7.75304 8.35654 8.43957 9.55458 10.12074 10.46853 11.47573 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.003721 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.889217 B = 7523.673498 C = 8541.397389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.047 0.953 12 C -0.123 4.123 13 C -0.101 4.101 14 H 0.099 0.901 15 C -0.126 4.126 16 C 0.135 3.865 17 H 0.093 0.907 18 C -0.144 4.144 19 N -0.601 5.601 20 C 0.575 3.425 21 O -0.537 6.537 22 C -0.106 4.106 23 C -0.089 4.089 24 C -0.085 4.085 25 C -0.089 4.089 26 C -0.212 4.212 27 C 0.058 3.942 28 N -0.593 5.593 29 H 0.417 0.583 30 C 0.082 3.918 31 C -0.123 4.123 32 C 0.095 3.905 33 H 0.254 0.746 34 H 0.383 0.617 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.146 0.854 44 H 0.171 0.829 45 H 0.161 0.839 46 H 0.071 0.929 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.914 -19.719 8.848 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.065 0.935 12 C -0.161 4.161 13 C -0.120 4.120 14 H 0.117 0.883 15 C -0.164 4.164 16 C 0.032 3.968 17 H 0.111 0.889 18 C -0.185 4.185 19 N -0.334 5.334 20 C 0.365 3.635 21 O -0.415 6.415 22 C -0.111 4.111 23 C -0.109 4.109 24 C -0.104 4.104 25 C -0.094 4.094 26 C -0.238 4.238 27 C -0.070 4.070 28 N -0.196 5.196 29 H 0.254 0.746 30 C -0.025 4.025 31 C -0.143 4.143 32 C -0.027 4.027 33 H 0.064 0.936 34 H 0.216 0.784 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.164 0.836 44 H 0.188 0.812 45 H 0.177 0.823 46 H 0.088 0.912 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.248 -19.322 8.358 23.869 hybrid contribution -0.214 1.042 0.316 1.109 sum 11.033 -18.281 8.674 23.047 Atomic orbital electron populations 1.69667 1.05050 1.25456 1.58115 1.24700 0.95478 0.97581 1.03096 0.86170 0.79007 0.84270 0.77176 1.20507 1.21812 1.21904 1.19282 0.90975 0.84125 1.42158 0.91338 1.42430 1.05671 0.99791 1.88530 1.20242 0.94224 0.86001 0.92637 0.93465 1.22152 0.99214 0.93197 1.01525 1.22694 0.94011 0.98632 0.96693 0.88281 1.23043 0.99356 0.98342 0.95703 1.22375 0.87044 0.96799 0.90600 0.88877 1.22824 1.00100 0.94356 1.01242 1.48424 1.07102 1.67309 1.10562 1.17797 0.80368 0.77474 0.87814 1.90776 1.75550 1.45901 1.29257 1.19534 0.94137 1.04871 0.92526 1.20691 0.91441 0.99109 0.99642 1.20177 0.99673 1.00066 0.90442 1.19424 0.92225 1.03574 0.94221 1.21722 0.98832 1.11976 0.91246 1.21864 0.84030 1.02882 0.98176 1.41760 1.08785 1.62159 1.06849 0.74640 1.18130 0.94903 1.04506 0.84925 1.21671 1.01392 1.01134 0.90141 1.22629 0.92906 0.99336 0.87843 0.93644 0.78367 0.91654 0.91456 0.89407 0.91323 0.91705 0.91533 0.84763 0.85529 0.83586 0.81196 0.82268 0.91155 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 23.12 29.55 -169.99 -5.02 18.10 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.23 -6.65 9.92 -15.06 -0.15 -6.80 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.72 -18.10 5.11 -53.42 -0.27 -18.37 16 10 C 0.18 3.49 2.39 -67.93 -0.16 3.32 16 11 H 0.05 0.99 5.90 -51.93 -0.31 0.69 16 12 C -0.12 -1.82 4.97 -26.21 -0.13 -1.95 16 13 C -0.10 -1.12 4.32 -87.93 -0.38 -1.50 16 14 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.13 -1.44 6.18 -24.29 -0.15 -1.59 16 16 C 0.13 2.02 3.97 -65.61 -0.26 1.76 16 17 H 0.09 1.43 8.06 -51.93 -0.42 1.01 16 18 C -0.14 -2.67 5.29 -26.28 -0.14 -2.81 16 19 N -0.60 -9.03 2.35 -167.52 -0.39 -9.42 16 20 C 0.58 9.88 7.80 -12.45 -0.10 9.78 16 21 O -0.54 -11.00 16.64 5.28 0.09 -10.92 16 22 C -0.11 -1.58 5.87 -104.95 -0.62 -2.20 16 23 C -0.09 -1.24 9.51 -39.57 -0.38 -1.62 16 24 C -0.08 -1.03 10.03 -39.69 -0.40 -1.43 16 25 C -0.09 -1.08 6.37 -105.05 -0.67 -1.75 16 26 C -0.21 -2.00 11.08 -37.70 -0.42 -2.42 16 27 C 0.06 0.44 11.81 -16.78 -0.20 0.24 16 28 N -0.59 -5.03 6.07 -10.68 -0.06 -5.10 16 29 H 0.42 2.32 8.96 -40.82 -0.37 1.96 16 30 C 0.08 0.96 7.26 -84.00 -0.61 0.35 16 31 C -0.12 -1.56 8.62 -39.03 -0.34 -1.89 16 32 C 0.10 1.13 3.59 -2.83 -0.01 1.12 16 33 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 37 H 0.09 0.97 7.75 -51.93 -0.40 0.57 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 41 H 0.13 1.86 7.64 -52.48 -0.40 1.46 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 44 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.16 1.74 2.74 -58.38 -0.16 1.58 16 46 H 0.07 0.67 6.72 -51.93 -0.35 0.32 16 47 H 0.08 1.04 5.43 -51.93 -0.28 0.76 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -35.54 368.43 -10.93 -46.46 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.34 Total: 11.22 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -5.20 Total: -9.86 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.01 Total: -60.56 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.54 -10.93 -46.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095004743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.899 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds