Wall clock time and date at job start Sat Apr 11 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48498 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47085 * 299.99701 * 3 2 1 6 6 H 1.48500 * 109.47138 * 59.99749 * 3 2 1 7 7 C 1.38807 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00147 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00395 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00181 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.32910 * 34.64284 * 10 9 7 12 12 C 1.53029 * 109.32367 * 154.11173 * 10 9 7 13 13 C 1.53975 * 108.82513 * 175.67694 * 12 10 9 14 14 H 1.09000 * 112.99359 * 169.00344 * 13 12 10 15 15 C 1.55428 * 106.41371 * 293.81653 * 13 12 10 16 16 C 1.55168 * 100.35229 * 73.38158 * 15 13 12 17 17 H 1.08997 * 113.04984 * 162.99348 * 16 15 13 18 18 C 1.52987 * 109.32450 * 274.99663 * 10 9 7 19 19 N 1.47791 * 104.25716 * 40.55162 * 16 15 13 20 20 C 1.34767 * 125.85654 * 153.51031 * 19 16 15 21 21 O 1.21594 * 120.00158 * 5.24708 * 20 19 16 22 22 C 1.47584 * 120.00086 * 185.24551 * 20 19 16 23 23 C 1.40240 * 119.83548 * 171.92476 * 22 20 19 24 24 C 1.36192 * 120.37758 * 180.27372 * 23 22 20 25 25 C 1.39911 * 119.96059 * 359.50414 * 24 23 22 26 26 C 1.46255 * 133.83945 * 180.14307 * 25 24 23 27 27 C 1.34458 * 107.03551 * 180.31730 * 26 25 24 28 28 N 1.36560 * 109.97427 * 359.97438 * 27 26 25 29 29 H 0.97003 * 125.06730 * 180.02562 * 28 27 26 30 30 C 1.37824 * 109.86234 * 359.97438 * 28 27 26 31 31 C 1.38684 * 133.37562 * 179.97438 * 30 28 27 32 32 C 1.47080 * 108.28092 * 333.77394 * 19 16 15 33 33 H 0.96992 * 119.99730 * 0.02562 * 1 2 3 34 34 H 0.97006 * 119.99365 * 359.97438 * 9 7 2 35 35 H 1.08997 * 109.57767 * 295.47648 * 12 10 9 36 36 H 1.09001 * 109.58466 * 55.87471 * 12 10 9 37 37 H 1.08999 * 111.23537 * 315.60408 * 15 13 12 38 38 H 1.09003 * 111.23639 * 191.15628 * 15 13 12 39 39 H 1.08998 * 109.53288 * 64.75666 * 18 10 9 40 40 H 1.09004 * 109.59450 * 304.57054 * 18 10 9 41 41 H 1.08003 * 119.80555 * 0.02562 * 23 22 20 42 42 H 1.08001 * 120.01514 * 179.71889 * 24 23 22 43 43 H 1.08004 * 126.48371 * 0.35607 * 26 25 24 44 44 H 1.07996 * 125.01273 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.16113 * 0.05557 * 31 30 28 46 46 H 1.09000 * 109.97351 * 120.22583 * 32 19 16 47 47 H 1.09005 * 109.97293 * 241.50516 * 32 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9709 -3.5458 0.5870 12 6 1.1857 -4.7446 0.6320 13 6 1.9216 -6.0932 0.5291 14 1 1.4539 -6.8797 1.1214 15 6 2.0038 -6.4343 -0.9851 16 6 3.0866 -5.4206 -1.4408 17 1 3.5227 -5.6682 -2.4086 18 6 2.4213 -4.0330 -1.4361 19 7 4.0843 -5.4390 -0.3506 20 6 5.3937 -5.1452 -0.4739 21 8 5.8285 -4.7388 -1.5342 22 6 6.3001 -5.3166 0.6782 23 6 7.6844 -5.1744 0.5041 24 6 8.5313 -5.3358 1.5584 25 6 8.0200 -5.6349 2.8259 26 6 8.6290 -5.8632 4.1359 27 6 7.6281 -6.1200 4.9963 28 7 6.4291 -6.0742 4.3442 29 1 5.5643 -6.2262 4.7564 30 6 6.6310 -5.7787 3.0132 31 6 5.7761 -5.6170 1.9332 32 6 3.4041 -5.8391 0.8905 33 1 -0.4849 0.8400 -0.0004 34 1 0.3555 -2.3881 0.0005 35 1 1.0051 -4.5062 1.6801 36 1 0.2362 -4.8052 0.1003 37 1 1.0529 -6.2473 -1.4841 38 1 2.3339 -7.4613 -1.1411 39 1 3.1136 -3.2955 -1.8419 40 1 1.5183 -4.0596 -2.0461 41 1 8.0813 -4.9396 -0.4725 42 1 9.5966 -5.2294 1.4168 43 1 9.6832 -5.8308 4.3684 44 1 7.7538 -6.3306 6.0480 45 1 4.7096 -5.7255 2.0643 46 1 3.8546 -6.7499 1.2850 47 1 3.4737 -5.0393 1.6278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095004743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:16 Heat of formation + Delta-G solvation = 48.438840 kcal Electronic energy + Delta-G solvation = -29921.478377 eV Core-core repulsion = 26069.811071 eV Total energy + Delta-G solvation = -3851.667306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51225 -41.84459 -39.69011 -37.50820 -36.63263 -34.50604 -33.26199 -32.79265 -31.80400 -30.50525 -29.89692 -29.37191 -27.23091 -25.71029 -24.61299 -23.81448 -22.49783 -22.30459 -21.73284 -20.85212 -20.16399 -19.21353 -18.55869 -18.52485 -17.40241 -17.06955 -16.48003 -16.37663 -16.10172 -15.54400 -15.41481 -15.24127 -15.15308 -15.00101 -14.55720 -14.37900 -14.05483 -13.97179 -13.88362 -13.60943 -13.48592 -13.23649 -12.96652 -12.86507 -12.81558 -12.75758 -12.56855 -12.40177 -12.19689 -12.06210 -11.83808 -11.39919 -11.34966 -11.03274 -10.90593 -10.86240 -10.74945 -9.74036 -9.23866 -9.02848 -8.70179 -8.00936 -5.27791 -0.24696 0.46356 1.38354 1.39993 1.49680 1.62021 1.90868 2.03054 2.23710 2.49496 2.92181 3.30644 3.40227 3.43367 3.64678 3.71849 3.87386 3.96226 4.05057 4.18481 4.20323 4.24765 4.30539 4.33940 4.39354 4.40721 4.53707 4.60625 4.65753 4.66687 4.73732 4.81734 4.83494 4.99268 5.01273 5.04631 5.11119 5.23299 5.25351 5.31404 5.38549 5.43020 5.49486 5.52379 5.57701 5.66500 5.76575 6.11090 6.23601 6.48894 6.71036 7.08651 7.29442 8.06406 8.30307 9.22103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.003721 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.889217 B = 7523.673498 C = 8541.397389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.066 4.066 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.237 4.237 8 H 0.054 0.946 9 N -0.734 5.734 10 C 0.176 3.824 11 H 0.029 0.971 12 C -0.115 4.115 13 C -0.081 4.081 14 H 0.150 0.850 15 C -0.113 4.113 16 C 0.131 3.869 17 H 0.083 0.917 18 C -0.135 4.135 19 N -0.601 5.601 20 C 0.565 3.435 21 O -0.590 6.590 22 C -0.138 4.138 23 C -0.110 4.110 24 C -0.088 4.088 25 C -0.105 4.105 26 C -0.236 4.236 27 C 0.083 3.917 28 N -0.581 5.581 29 H 0.433 0.567 30 C 0.064 3.936 31 C -0.114 4.114 32 C 0.087 3.913 33 H 0.252 0.748 34 H 0.375 0.625 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.011 0.989 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.146 0.854 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.177 0.823 46 H 0.107 0.893 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.747 -22.510 12.258 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.369 4.369 8 H 0.072 0.928 9 N -0.374 5.374 10 C 0.068 3.932 11 H 0.047 0.953 12 C -0.153 4.153 13 C -0.099 4.099 14 H 0.168 0.832 15 C -0.151 4.151 16 C 0.028 3.972 17 H 0.102 0.898 18 C -0.176 4.176 19 N -0.332 5.332 20 C 0.357 3.643 21 O -0.473 6.473 22 C -0.142 4.142 23 C -0.130 4.130 24 C -0.106 4.106 25 C -0.111 4.111 26 C -0.261 4.261 27 C -0.045 4.045 28 N -0.185 5.185 29 H 0.272 0.728 30 C -0.043 4.043 31 C -0.133 4.133 32 C -0.034 4.034 33 H 0.061 0.939 34 H 0.208 0.792 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.030 0.970 40 H 0.084 0.916 41 H 0.137 0.863 42 H 0.164 0.836 43 H 0.183 0.817 44 H 0.234 0.766 45 H 0.193 0.807 46 H 0.125 0.875 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.062 -22.166 11.808 27.443 hybrid contribution -0.080 1.888 -0.647 1.998 sum 10.982 -20.277 11.161 25.619 Atomic orbital electron populations 1.69779 1.06082 1.25935 1.59501 1.25369 0.96342 1.00399 1.03792 0.85264 0.77790 0.80727 0.77190 1.20485 1.21727 1.21113 1.19426 0.90529 0.85880 1.41087 0.92802 1.42592 1.05412 1.00832 1.88580 1.20458 0.94111 0.85624 0.92988 0.95326 1.22056 0.98658 0.93577 1.01008 1.22774 0.92669 0.97353 0.97136 0.83190 1.23042 0.97973 0.98430 0.95639 1.22380 0.88218 0.95623 0.91007 0.89846 1.22644 0.99026 0.95640 1.00283 1.48531 1.06555 1.66310 1.11844 1.18322 0.81328 0.76764 0.87914 1.90724 1.76686 1.48545 1.31320 1.19439 0.94023 1.07943 0.92794 1.20693 0.91809 1.00666 0.99817 1.20369 1.00406 0.99537 0.90314 1.19870 0.93078 1.02997 0.95133 1.22064 1.00501 1.13350 0.90158 1.22631 0.82774 0.99388 0.99740 1.41862 1.10189 1.60924 1.05538 0.72754 1.18202 0.94762 1.05106 0.86240 1.21749 1.02291 0.99847 0.89454 1.22904 0.93672 1.00566 0.86305 0.93856 0.79235 0.91351 0.91029 0.88495 0.88221 0.97038 0.91604 0.86267 0.83641 0.81734 0.76591 0.80654 0.87490 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.61 13.06 21.65 0.28 -59.33 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.96 48.72 29.55 68.60 2.03 50.75 16 4 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.24 -13.99 9.92 84.03 0.83 -13.16 16 8 H 0.05 3.27 7.83 -2.91 -0.02 3.25 16 9 N -0.73 -37.94 5.11 -322.93 -1.65 -39.59 16 10 C 0.18 7.04 2.39 45.00 0.11 7.14 16 11 H 0.03 1.25 5.90 -2.39 -0.01 1.24 16 12 C -0.11 -3.18 4.97 30.93 0.15 -3.02 16 13 C -0.08 -1.45 4.32 -9.05 -0.04 -1.49 16 14 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 15 C -0.11 -2.20 6.18 32.17 0.20 -2.01 16 16 C 0.13 3.98 3.97 45.79 0.18 4.16 16 17 H 0.08 2.68 8.06 -2.39 -0.02 2.67 16 18 C -0.13 -5.28 5.29 30.89 0.16 -5.12 16 19 N -0.60 -18.27 2.35 -802.19 -1.89 -20.15 16 20 C 0.56 20.68 7.80 86.71 0.68 21.35 16 21 O -0.59 -26.59 16.64 -4.01 -0.07 -26.66 16 22 C -0.14 -4.29 5.87 -20.07 -0.12 -4.41 16 23 C -0.11 -3.29 9.51 22.28 0.21 -3.08 16 24 C -0.09 -2.17 10.03 22.20 0.22 -1.95 16 25 C -0.11 -2.40 6.37 -20.14 -0.13 -2.53 16 26 C -0.24 -3.71 11.08 23.49 0.26 -3.45 16 27 C 0.08 0.87 11.81 83.09 0.98 1.85 16 28 N -0.58 -7.65 6.07 -187.72 -1.14 -8.79 16 29 H 0.43 2.92 8.96 -92.71 -0.83 2.09 16 30 C 0.06 1.39 7.26 38.96 0.28 1.67 16 31 C -0.11 -2.77 8.62 22.63 0.20 -2.58 16 32 C 0.09 1.84 3.59 86.85 0.31 2.15 16 33 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.38 20.24 7.80 -92.70 -0.72 19.52 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.96 7.97 -2.39 -0.02 1.95 16 37 H 0.10 1.80 7.75 -2.39 -0.02 1.78 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 2.52 8.00 -2.39 -0.02 2.50 16 41 H 0.12 3.76 7.64 -2.91 -0.02 3.74 16 42 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 45 H 0.18 3.48 2.74 -8.44 -0.02 3.45 16 46 H 0.11 1.58 6.72 -2.39 -0.02 1.57 16 47 H 0.07 1.75 5.43 -2.38 -0.01 1.73 16 Total: -1.00 -84.34 368.43 1.99 -82.35 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.54 Total: 29.38 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.96 Total: -7.96 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -4.39 Total: -127.86 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.07 Total: -26.66 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.03 Total: 50.75 kcal Total: -84.34 1.99 -82.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095004743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.791 kcal (2) G-P(sol) polarization free energy of solvation -84.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds